BAC Information

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BAC

Clone NameB6Ng01-147O04
Chromosome8 (Build37)
Map Location 106,650,424 - 106,651,435
singlet/doubletsinglet
Overlap geneCdh5
Upstream gene1600027J07Rik, LOC100041397, LOC667656
Downstream geneBean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147O04.bB6Ng01-147O04.g
ACCDH944640DH944641
length1,2521,012
definitionDH944640|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O04, 5' end.DH944641|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagacttggaggaggaagcagctcattatga
gagaaaagggtaccagccagataaaatgctagctaatcagttaaggaaaa
agccaaaagcggctggcgaaggccagcatgctgctcagcctccgggcagt
cggcttcaaggtcatagtgcacttccgccctatgcggagcccctgccctg
cgtagtgcgtcagccctgcgcagagaggcaatgcgcagactcgttcattc
caaaggaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctctggtagaatatgtgcagattaaaga
gcttgccgagtcggtctgtaaatatggaaccaatgctaattttaccttgg
tgcagttagacaggcttgctggcatggcactaactcctgccgactggcaa
atgattgcaaaagccgctctccctagtatgggcaaatatatggaatggag
agctctatggcaagaggctgcacaagcgcaggcccgagcaaatgctgctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttatactgctgatcaaacaaactaccactggggagcttatgccca
aatttcctccacggctattagggcctggaaggcgctctcccgagcaggtg
aggccactggacaactaacaaagatcgtccagagacctcaggagtcattc
tcagattttgtggccagaatgacagaggcagcagagagtatttttggaga
ttcagagcaagccgcacctctggtagaacagctcatttatgagcaagcca
cacaggagtgctgagcggccatagccccaagaaagaacaaagggtttaca
agactggctcagggttgtcgggagctcgggggacctctcaccaaatgcag
cttagcggccgcatcctcatcccaaaatgctcatgggcagaaatgattca
acgcattgatcttgttcaaaacactagattgtatttttgcaatagctcag
ctggaatgtgacaaaagtttccgaagattgtcgttactcatcagtatgag
aaatttactaaggcgacttattgttcaaaatctttctccgtatgttacga
atggacggctgatttgaacgatccttcggaaattgtatgcatcattcagt
cactcatgccttgaacggtcctgcagaggaatacacgattgtagtctctc
tc
gaattctctctctccacagggacctctgtcatccgtgtgacagcagtgga
tgcagatgaccccactgtggccggccacgccactgtcttgtaccaaatcg
tgaaaggaaatgagtatttcagcattgataattctggtctgtatgactaa
gccttttgggcgggtacccatttggagggatggaggagggacgtgaatat
tgcaggtaccagtgtatagagaacattaacctgataggtgtcaccagcca
ctgatccagagaaggaatgcataatacacataaagacatgttggagtggg
ttaggggagaaggaagcagacaagcgcccaaagcaggacctcaagtccag
aaagaagatcggggccttttcacccaagcatagaccaggactcaacagaa
catgctggttggaaagtcttttgtacacattcagagacatctgatttgaa
cccagaactactgctcagccctacagcccttgcacaagttagctaccacc
taagagcctcacgtccttcgtccagaagataggaatgctcacactccctt
gccaagtagccgagacgttgaaattcgatttcgcataggcacagccatgc
cacagaaatttttttccatgccttgttaagagaaaaaactttagaccaat
taaactttatcaagtttaatttttgcaaagaacagttcacaaattgggac
accccagaagctaaacaagttcagagaaaccccagggctgccacatagtt
gggtgatatttatagtacagggaaaaaaaaaaaccctgcagtctagaaac
agctcggatggttccagctggggtgtctgccttaattggaatagctgtga
acaggtggcagcctatgattaactgaagcacagccgctgtgattggctga
gcaacctcctaagtagggcttaagtggtattttacatgctactggttgca
tttcatcacagatcaagtctgcaagccaagaaggtcttcttgggcaacct
tgggtgtctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106650424_106651435
seq2: B6Ng01-147O04.g_69_1080

seq1  GAATTCTCTCTCTCCACAGGGACCTCTGTCATCCGTGTGACAGCAGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTCCACAGGGACCTCTGTCATCCGTGTGACAGCAGTGGA  50

seq1  TGCAGATGACCCCACTGTGGCCGGCCACGCCACTGTCTTGTACCAAATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGACCCCACTGTGGCCGGCCACGCCACTGTCTTGTACCAAATCG  100

seq1  TGAAAGGAAATGAGTATTTCAGCATTGATAATTCTGGTCTGTATGACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAATGAGTATTTCAGCATTGATAATTCTGGTCTGTATGACTAA  150

seq1  GCCTTTTGGGCGGGTACCCATTTGGAGGGATGGAGGAGGGACGTGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGGGCGGGTACCCATTTGGAGGGATGGAGGAGGGACGTGAATAT  200

seq1  TGCAGGTACCAGTGTATAGAGAACATTAACCTGATAGGTGTCACCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTACCAGTGTATAGAGAACATTAACCTGATAGGTGTCACCAGCCA  250

seq1  CTGATCCAGAGAAGGAATGCATAATACACATAAAGACATGTTGGAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCAGAGAAGGAATGCATAATACACATAAAGACATGTTGGAGTGGG  300

seq1  TTAGGGGAGAAGGAAGCAGACAAGCGCCCAAAGCAGGACCTCAAGTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAGAAGGAAGCAGACAAGCGCCCAAAGCAGGACCTCAAGTCCAG  350

seq1  AAAGAAGATCGGGGCCTTTTCACCCAAGCATAGACCAGGACTCAACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATCGGGGCCTTTTCACCCAAGCATAGACCAGGACTCAACAGAA  400

seq1  CATGCTGGTTGGAAAGTCTTTTGTACACATTCAGAGACATCTGATTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGTTGGAAAGTCTTTTGTACACATTCAGAGACATCTGATTTGAA  450

seq1  CCCAGAACTACTGCTCAGCCCTACAGCCCTTGCACAAGTTAGCTACCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACTACTGCTCAGCCCTACAGCCCTTGCACAAGTTAGCTACCACC  500

seq1  TAAGAGCCTCACGTCCTTCGTCCAGAAGATAGGAATGCTCACACTCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCTCACGTCCTTCGTCCAGAAGATAGGAATGCTCACACTCCCTT  550

seq1  GCCAAGTAGCCGAGACGTTGAAATTCGATTTCGCATAGGCACAGCCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTAGCCGAGACGTTGAAATTCGATTTCGCATAGGCACAGCCATGC  600

seq1  CACAGAAATTTTTTTCCATGCCTTGTTAAGAGAAAAAACTTTAGACCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATTTTTTTCCATGCCTTGTTAAGAGAAAAAACTTTAGACCAAT  650

seq1  TAAACTTTATCAAGTTTAATTTTTGCAAAGAACAGTTCACAAATTGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATCAAGTTTAATTTTTGCAAAGAACAGTTCACAAATTGGGAC  700

seq1  ACCCCAGAAGCTAAACAAGTTCAGAGAAACCCCAGGGCTGCCACATAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAAGCTAAACAAGTTCAGAGAAACCCCAGGGCTGCCACATAGTT  750

seq1  GGGTGATATTTATAGTACAGGG-AAAAAAAAAACCCTGCAGTCTAGAAAC  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGTGATATTTATAGTACAGGGAAAAAAAAAAACCCTGCAGTCTAGAAAC  800

seq1  AGCTCGGATGGTTCCAGCTGGGGTGTCTGCCTT-ATTTGAATAGCTGTGA  848
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  AGCTCGGATGGTTCCAGCTGGGGTGTCTGCCTTAATTGGAATAGCTGTGA  850

seq1  ACAGGTGGCAGCCTATGATTAACTGAAGCACAGCCGCTGTGATTGGCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGGCAGCCTATGATTAACTGAAGCACAGCCGCTGTGATTGGCTGA  900

seq1  GCAAACTCCTAAGTTAGGGCTTTAAGT-GTA-TTTACATGCTACTAGGTT  946
      |||| |||||||| |||||| |||||| ||| ||||||||||||| ||||
seq2  GCAACCTCCTAAG-TAGGGC-TTAAGTGGTATTTTACATGCTACT-GGTT  947

seq1  GCAGTTCATCACAGGATTCAAGTCTGCAAGTCCAGAAGG-CTTCTTGGGC  995
      ||| ||||||||||   ||||||||||||| | |||||| ||||||||||
seq2  GCATTTCATCACAG--ATCAAGTCTGCAAGCCAAGAAGGTCTTCTTGGGC  995

seq1  CAACTTTGGTGTCTAAT  1012
       | ||| ||||||||||
seq2  AACCTTGGGTGTCTAAT  1012