BAC Information

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BAC

Clone NameB6Ng01-148D22
Chromosome8 (Build37)
Map Location 108,343,364 - 108,484,695
singlet/doubletdoublet
Overlap geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4
Upstream geneBC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneDpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148D22.bB6Ng01-148D22.g
ACCDH944909DH944910
length9141,098
definitionDH944909|Mus musculus domesticus DNA, BAC clone: B6Ng01-148D22, 5' end.DH944910|Mus musculus domesticus DNA, BAC clone: B6Ng01-148D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,483,785 - 108,484,695)(108,343,364 - 108,344,472)
sequence
gaattctttccctctctttccacaggacagggtaaccacagagagaatag
ccctttcctttgccctttggacgcctccagaggaaatgactactatgacc
ggaacttggcactgtttgaggtatctaaggagccattcaggtgtggtcgt
ctggaaggggcttctccggacctctcagctaagcatcaggctggcttctc
ttccactcccaactgccctctctttgcagccatccaggctatggatctca
tggccctttcaatacacttcaccttcccagacccccttgcaaccttacgt
ctgtcctccagggccagtatcctttgccttccttgcagcccctcaccaag
gtgaccacttcctcctcccctccattcctagggcctctcccagcccatgg
ctctgctgtggatagattctttcctttctcctttcctattggctcttcca
gctgttaccctctggttacagaggcttgttttccctccagcctctgtccc
actctgccctccatagctagagctgcagggaatgtgtctctggaaagatt
cccatgtttgtgccttccaacgggaaatttccctttctggacccaagctg
agaagtaagatctggatttaagacatggttcagggtcctaaactccgaac
ctgtacattcatctgcctcacagccaagtaatgtcagcttctcggtctcc
acacattcaaagggcctacatcttcactcatcactcctaacctggcttcc
tgtgtataggatcagaagggacataaaagctttaagacagtgggcagatg
ggagagtcacataggccacaggggcaagaaaccctttggacccctttgga
gtgctggaagtcttgtgctctgtccccacctgaagattgtgtatgtatgt
gtgttatgtgttcg
gaattccttgcctttaatcccagcacttgggaggcaaatggatttctgag
ttcgaggccagcctggtctacaaagtgagttccaagacagtcagggctat
atagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaaagaa
aaatggattccagcttcctcaacccatgccagagctacatcccaagatgt
ccaaactagttttcaccttcaatataggtaagactctatcaccccaagag
gctccagaggctccagtaacagcacagtatttggcacttgaggaaacacg
catccttaagctcagcagccactccaattccaccagctctggggcagtca
gggagaacaggacggcactgctggctacctaccagtgctctgacaaggat
agcacctactcctcagggcagaggagggaaggcattagccagtccacaga
taagcagagcttcaacagcactgaaccatgcacagacaccagaatggggg
gaggggttcttgaatgagaggaccaagaaggtgacaggtaagatcttaat
aaagtgactctcggtctccattacaaatcattttgggtgatccaaacaca
tgagaaggaaatgcttaggcataaaacataggatgatactgtctttcaaa
gagaagctggcaaaaccaaaccatcagacaacgaccacgtaagcagagaa
tcactctacctctgagaaaaaggaccatactaagagaaaactatgctccg
ggggaaggacctaaagccactggcccacatggacaacactctcaacagag
gcctgctagaccagactgggccagagtctatacacccaactaccctcaaa
acaaaggtccgcgatccttggccacatacacaaggattttccatttgggt
ccctactaactctgtcctgggcccaattttccaataacatggtctccctg
tgtaacccttagctagccttgaaggcaagctgggttcaaacttttgaata
ttcctggctttgcacctgagcgcaatattacaggcatagccacatgccca
ggacagctaatctttcctgtggtctctggccaaagcaccgtttctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108483785_108484695
seq2: B6Ng01-148D22.b_45_958 (reverse)

seq1  CAAACACATAACACACATACATACACAATCTTCAGGTGGGGACAGAGCAC  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACACATAACACACATACATACACAATCTTCAGGTGGGGACAGAGCAC  50

seq1  AAGACTTCCAGCACTCC-AAGGGGTCC-AAGGGTTTCTTGCCCCTGTGGC  98
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  AAGACTTCCAGCACTCCAAAGGGGTCCAAAGGGTTTCTTGCCCCTGTGGC  100

seq1  CTATGTGACTCTCCCATCTGCCCACTGTCTT-AAGCTTTTATGTCCCTTC  147
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTATGTGACTCTCCCATCTGCCCACTGTCTTAAAGCTTTTATGTCCCTTC  150

seq1  TGATCCTATACACAGGAAGCCAGGTTAGGAGTGATGAGTGAAGATGTAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTATACACAGGAAGCCAGGTTAGGAGTGATGAGTGAAGATGTAGG  200

seq1  CCCTTTGAATGTGTGGAGACCGAGAAGCTGACATTACTTGGCTGTGAGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGAATGTGTGGAGACCGAGAAGCTGACATTACTTGGCTGTGAGGC  250

seq1  AGATGAATGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTCTTAAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATGTACAGGTTCGGAGTTTAGGACCCTGAACCATGTCTTAAATC  300

seq1  CAGATCTTACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCCGTTGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTACTTCTCAGCTTGGGTCCAGAAAGGGAAATTTCCCGTTGGAA  350

seq1  GGCACAAACATGGGAATCTTTCCAGAGACACATTCCCTGCAGCTCTAGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAACATGGGAATCTTTCCAGAGACACATTCCCTGCAGCTCTAGCT  400

seq1  ATGGAGGGCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCTCTGTAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGCAGAGTGGGACAGAGGCTGGAGGGAAAACAAGCCTCTGTAAC  450

seq1  CAGAGGGTAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGAAAGAATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTAACAGCTGGAAGAGCCAATAGGAAAGGAGAAAGGAAAGAATC  500

seq1  TATCCACAGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGGAGGGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACAGCAGAGCCATGGGCTGGGAGAGGCCCTAGGAATGGAGGGGAG  550

seq1  GAGGAAGTGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAGGATACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGGTCACCTTGGTGAGGGGCTGCAAGGAAGGCAAAGGATACTG  600

seq1  GCCCTGGAGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGGTGAAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGGACAGACGTAAGGTTGCAAGGGGGTCTGGGAAGGTGAAGTG  650

seq1  TATTGAAAGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAGAGAGGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAGGGCCATGAGATCCATAGCCTGGATGGCTGCAAAGAGAGGGC  700

seq1  AGTTGGGAGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAGGTCCGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGAGTGGAAGAGAAGCCAGCCTGATGCTTAGCTGAGAGGTCCGGA  750

seq1  GAAGCCCCTTCCAGACGACCACACCTGAATGGCTCCTTAGATACCTCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCCTTCCAGACGACCACACCTGAATGGCTCCTTAGATACCTCAAA  800

seq1  CAGTGCCAAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCGTCCAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAAGTTCCGGTCATAGTAGTCATTTCCTCTGGAGGCGTCCAAAG  850

seq1  GGCAAAGGAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGTGGAAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGAAAGGGCTATTCTCTCTGTGGTTACCCTGTCCTGTGGAAAGA  900

seq1  GAGGGAAAGAATTC  911
      ||||||||||||||
seq2  GAGGGAAAGAATTC  914

seq1: chr8_108343364_108344472
seq2: B6Ng01-148D22.g_68_1165

seq1  GAATTCCTTGCCTTTAATCCCAGCACTTGGGAGGCAAATGGATTTCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCCTTTAATCCCAGCACTTGGGAGGCAAATGGATTTCTGAG  50

seq1  TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGACAGTCAGGGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGACAGTCAGGGCTAT  100

seq1  ATAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAGAA  150

seq1  AAATGGATTCCAGCTTCCTCAACCCATGCCAGAGCTACATCCCAAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTCCAGCTTCCTCAACCCATGCCAGAGCTACATCCCAAGATGT  200

seq1  CCAAACTAGTTTTCACCTTCAATATAGGTAAGACTCTATCACCCCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTAGTTTTCACCTTCAATATAGGTAAGACTCTATCACCCCAAGAG  250

seq1  GCTCCAGAGGCTCCAGTAACAGCACAGTATTTGGCACTTGAGGAAACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAGGCTCCAGTAACAGCACAGTATTTGGCACTTGAGGAAACACG  300

seq1  CATCCTTAAGCTCAGCAGCCACTCCAATTCCACCAGCTCTGGGGCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTAAGCTCAGCAGCCACTCCAATTCCACCAGCTCTGGGGCAGTCA  350

seq1  GGGAGAACAGGACGGCACTGCTGGCTACCTACCAGTGCTCTGACAAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAACAGGACGGCACTGCTGGCTACCTACCAGTGCTCTGACAAGGAT  400

seq1  AGCACCTACTCCTCAGGGCAGAGGAGGGAAGGCATTAGCCAGTCCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTACTCCTCAGGGCAGAGGAGGGAAGGCATTAGCCAGTCCACAGA  450

seq1  TAAGCAGAGCTTCAACAGCACTGAACCATGCACAGACACCAGAATGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAGCTTCAACAGCACTGAACCATGCACAGACACCAGAATGGGGG  500

seq1  GAGGGGTTCTTGAATGAGAGGACCAAGAAGGTGACAGGTAAGATCTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTCTTGAATGAGAGGACCAAGAAGGTGACAGGTAAGATCTTAAT  550

seq1  AAAGTGACTCTCGGTCTCCATTACAAATCATTTTGGGTGATCCAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACTCTCGGTCTCCATTACAAATCATTTTGGGTGATCCAAACACA  600

seq1  TGAGAAGGAAATGCTTAGGCATAAAACATAGGATGATACTGTCTTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGAAATGCTTAGGCATAAAACATAGGATGATACTGTCTTTCAAA  650

seq1  GAGAAGCTGGCAAAACCAAACCATCAGACAACGACCACGTAAGCAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTGGCAAAACCAAACCATCAGACAACGACCACGTAAGCAGAGAA  700

seq1  TCACTCTACCTCTGAGAAAAAGGACCATACTAAGAGAAAACTATGCTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTACCTCTGAGAAAAAGGACCATACTAAGAGAAAACTATGCTCCG  750

seq1  GGGGAAGGACCTAAAGCCACTGGCCCACATGGACAACACTCTCAACAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGACCTAAAGCCACTGGCCCACATGGACAACACTCTCAACAGAG  800

seq1  GCCTGCTAGACCAGACT-GGCCAGAGTCTATACACCCAACTACCCTCAAA  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCTGCTAGACCAGACTGGGCCAGAGTCTATACACCCAACTACCCTCAAA  850

seq1  ACAAA-GTCCGCGATCCTTGGCCACAATACACAAGGGATTTTCCATTT-G  897
      ||||| ||||||||||||||||||| |||||||| ||||||||||||| |
seq2  ACAAAGGTCCGCGATCCTTGGCCAC-ATACACAA-GGATTTTCCATTTGG  898

seq1  GTCCCTACTTAACTCTGTCCTGGGCCCCAATTTTTCCAAATAAACATGGT  947
      |||||||| ||||||||||||||||||  | ||||||||   ||||||||
seq2  GTCCCTAC-TAACTCTGTCCTGGGCCC--AATTTTCCAA--TAACATGGT  943

seq1  CTCCCTGTGTAACCCTAAGCTAGCCTTGAAGCCAAGCTGGGTTCAAACTT  997
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  CTCCCTGTGTAACCCTTAGCTAGCCTTGAAGGCAAGCTGGGTTCAAACTT  993

seq1  TTG-ATATTCCTGCCTCTGGCACCTGAGCGCAATAATTACAAGCATAAGC  1046
      ||| ||||||||| || | ||||||||||||||| |||||| |||| |||
seq2  TTGAATATTCCTGGCT-TTGCACCTGAGCGCAAT-ATTACAGGCAT-AGC  1040

seq1  CACCATGCCCAGGACAGCCTACATCTTTTCCTGTGTCTTCTGCCCAAAGC  1096
      || |||||||||||||| ||| ||| |||||||||   |||| |||||||
seq2  CA-CATGCCCAGGACAG-CTA-ATC-TTTCCTGTGGTCTCTGGCCAAAGC  1086

seq1  ATCTGTTTCTCCA  1109
      | | |||||||||
seq2  A-CCGTTTCTCCA  1098