BAC Information

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BAC

Clone NameB6Ng01-149J16
Chromosome8 (Build37)6 (Build37)
Map Location 99,778,081 - 99,779,240133,629,660 - 133,630,450
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC333331
Downstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149J16.bB6Ng01-149J16.g
ACCDH945899DH945900
length1,151489
definitionDH945899|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J16, 5' end.DH945900|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,778,081 - 99,779,240)(133,629,660 - 133,630,450)
sequence
gaattcatgaatattgctgcatccttgggtttcattctctggcatcaccc
accttgctttgtgagatgagaccaatcagtgattagctcaacaagtaggc
tagacaggctggccagttatcccaggcatccagctgtccctccctcccaa
ccactgagattgcaagcaagcatgtgccccatctgcacttcattttttaa
tgagttgtgtggcttaaacccatgtcctcaggcttgcatagtgagcattt
actaactgagccatctcctgactgccttgtgattcaattttaactgctca
aaccattagctttcaggttccagaatagcatttctccaaggattataact
ccatctagaattgattcaatcaattccatggaggaaccaaatctttcaga
gacaaattttttccttgaatggcatttcatattcatcaaaaatatgtaaa
gtcattcaagacaagagagccttttcttggttaatagaaaattgttcttg
aaaagactggactatttctttaacaacaacaacaaaaagaaatctactgt
acttcagaggacagcctgaagcattttaaagaaagccatttgccaaggat
tgctagtctttgggagacgctctatctgctcttctttttccctcttccca
gaacctgtcttggccacagtccaaagatagcaccaaacatttaaaaacaa
atgtttaagaaaaaagagataacactgcattaattgtcgggtgataaaaa
gcagtgtctctcaaacatagcagctaattactgcatactttatataccaa
aaacatggactggcttaactggtagttatggccagagtcctcacaggaga
gtctagtcaaagttgtttaagctttagtcatcacaaaacacaactggaag
atcttgccccaagcacacatatgttctatctgcaagccttaactctttct
ctttgttgataggatatttctattattccagtcatagagctacattaagt
tgcagttttcatcctaaagcacagggtctcagaagtgactgaaaggtttc
actcaccagcaatggagagtatttgttcattccctgcttcatatcctcca
cctgcatggagtcgtccttggtcattgtgaggtggaggatggaatctcaa
g
tccttatttgtacaatgttgattccagagaatttggcaacatgaaagaaa
tccactcaggtcttgtgatatattcatacagctttaatccatgttgctta
tatcatttggccattccctggacatttacattggccaacatatttctgga
aggataaagaagaaaaagatcttgcttagtcatctatggcagtagttctc
tgaccactgttctggttagtgttggcattccttctatgctctgcccaaca
gttacctagcaacagccaggtaggcctgggttgctatgaaagggactgtt
tggcctctctctttctgaatctttgactccctgaccccttttgctttccc
taactctctctctctctctctctctctctctctctctctctctctctccc
cctctactctcttctcaaccctccttaccatgtctcaaaatatactctag
tctacaatagacctgttgttgtatggctgatatctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_99778081_99779240
seq2: B6Ng01-149J16.b_43_1193

seq1  GAATTCATGAATATTGCTGCATCCTTGGGTTTCATTCTCTGGCATCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATATTGCTGCATCCTTGGGTTTCATTCTCTGGCATCACCC  50

seq1  ACCTTGCTTTGTGAGATGAGACCAATCAGTGATTAGCTCAACAAGTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTTTGTGAGATGAGACCAATCAGTGATTAGCTCAACAAGTAGGC  100

seq1  TAGACAGGCTGGCCAGTTATCCCAGGCATCCAGCTGTCCCTCCCTCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGGCTGGCCAGTTATCCCAGGCATCCAGCTGTCCCTCCCTCCCAA  150

seq1  CCACTGAGATTGCAAGCAAGCATGTGCCCCATCTGCACTTCATTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGATTGCAAGCAAGCATGTGCCCCATCTGCACTTCATTTTTTAA  200

seq1  TGAGTTGTGTGGCTTAAACCCATGTCCTCAGGCTTGCATAGTGAGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTGTGGCTTAAACCCATGTCCTCAGGCTTGCATAGTGAGCATTT  250

seq1  ACTAACTGAGCCATCTCCTGACTGCCTTGTGATTCAATTTTAACTGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTGAGCCATCTCCTGACTGCCTTGTGATTCAATTTTAACTGCTCA  300

seq1  AACCATTAGCTTTCAGGTTCCAGAATAGCATTTCTCCAAGGATTATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAGCTTTCAGGTTCCAGAATAGCATTTCTCCAAGGATTATAACT  350

seq1  CCATCTAGAATTGATTCAATCAATTCCATGGAGGAACCAAATCTTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGAATTGATTCAATCAATTCCATGGAGGAACCAAATCTTTCAGA  400

seq1  GACAAATTTTTTCCTTGAATGGCATTTCATATTCATCAAAAATATGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTTTTTCCTTGAATGGCATTTCATATTCATCAAAAATATGTAAA  450

seq1  GTCATTCAAGACAAGAGAGCCTTTTCTTGGTTAATAGAAAATTGTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCAAGACAAGAGAGCCTTTTCTTGGTTAATAGAAAATTGTTCTTG  500

seq1  AAAAGACTGGACTATTTCTTTAACAACAACAACAAAAAGAAATCTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGGACTATTTCTTTAACAACAACAACAAAAAGAAATCTACTGT  550

seq1  ACTTCAGAGGACAGCCTGAAGCATTTTAAAGAAAGCCATTTGCCAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAGGACAGCCTGAAGCATTTTAAAGAAAGCCATTTGCCAAGGAT  600

seq1  TGCTAGTCTTTGGGAGACGCTCTATCTGCTCTTCTTTTTCCCTCTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTCTTTGGGAGACGCTCTATCTGCTCTTCTTTTTCCCTCTTCCCA  650

seq1  GAACCTGTCTTGGCCACAGTCCAAAGATAGCACCAAACATTTAAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTCTTGGCCACAGTCCAAAGATAGCACCAAACATTTAAAAACAA  700

seq1  ATGTTTAAGAAAAAAGAGATAACACTGCATTAATTGTCGGGTGATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAGAAAAAAGAGATAACACTGCATTAATTGTCGGGTGATAAAAA  750

seq1  GCAGTGTCTCTCAAACATAGCAGCTAATTACTGCATACTTTATATACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTCTCAAACATAGCAGCTAATTACTGCATACTTTATATACCAA  800

seq1  AAACATGGACTGGCTTAACTGGTAGTTATGGCCAGAGTCCTCACAGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGACTGGCTTAACTGGTAGTTATGGCCAGAGTCCTCACAGGAGA  850

seq1  GTCTAGTCAAAGTTGTTTAAGGCTTTAGTCATCACAAAACACAACTGGAA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTCTAGTCAAAGTTGTTTAA-GCTTTAGTCATCACAAAACACAACTGGAA  899

seq1  GATC-TGCCCCAAGCACACATATGTTCCTATCTGCAAGCCTTAACTCTTT  949
      |||| ||||||||||||||||||||| |||||||||||||||||||| ||
seq2  GATCTTGCCCCAAGCACACATATGTT-CTATCTGCAAGCCTTAACTC-TT  947

seq1  TCTCTTTGTTGATAGGATATTTCTATTATTCCAGTCATAGAGCTACATAA  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTCTTTGTTGATAGGATATTTCTATTATTCCAGTCATAGAGCTACATTA  997

seq1  GTTTGCAGTTTTCATCCTTAAAGCACAGGGTTCTCAG-AGTGACTGAAAA  1048
        ||||||||||||||| |||||||||||| |||||| |||||||| |||
seq2  AGTTGCAGTTTTCATCC-TAAAGCACAGGG-TCTCAGAAGTGACTG-AAA  1044

seq1  GGTTTCACTCCACCAGCAATGGAAGAGTATTTGTTCATTCCCTGGCTTCA  1098
      ||||||||| |||||||||||| |||||||||||||||||||| ||||||
seq2  GGTTTCACT-CACCAGCAATGG-AGAGTATTTGTTCATTCCCT-GCTTCA  1091

seq1  TATCCT-CACCTGCAT-GAGTCGTCACTTGGGCCATTGTGAAAGGTGGAA  1146
      |||||| ||||||||| |||||||| ||| || |||||||  ||||||| 
seq2  TATCCTCCACCTGCATGGAGTCGTC-CTT-GGTCATTGTG--AGGTGGAG  1137

seq1  GATGGAATCTCAAG  1160
      ||||||||||||||
seq2  GATGGAATCTCAAG  1151

seq1: chr6_133629660_133630450
seq2: B6Ng01-149J16.g_113_472

seq1  CATGAAAGAAAAATATCACCTCTGATTTCAATGGAAACAGAAATCAGACT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGAAGAGTGGGTAAGCAAAACTATTAGGGAGCAAAGTGGGGATGAAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGGCAGGTGTCAGGTTGAAGTTCTGCACATCTTAGACATTTTGTTCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCAATATTATAATATTTAATGCAATTATTTATCAAATGTTTATGTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTTCAAGAAGTCCATACATGTATGTAATGGAGTTTGATTAAACCACAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATCCACCCAACTGGGAATGTTTTCCTAATTTTGAGTGTTCTTTCTTTGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTCACTGAGTCCACCTGCATGTGCACTGCTGTGAAGCTAGATTATTCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  AATTAGATTGATGATGTCCATATCTAACAACATTCCTGAAAAGAACATAA  400
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTATTCTCTTTTCTTATGCTTTTTACTTAGTACTTTTAATTTATAGAA  450
                                                | | ||||
seq2  ----------------------------------------CATGAAAGAA  10

seq1  ACATAATGGCTTTTCTTGTGATATATTCATACATATCT-ATCAGTG-TAC  498
      |   | |  |   ||||||||||||||||||||  | | |||  || | |
seq2  ATCCACT--CAGGTCTTGTGATATATTCATACAGCTTTAATCCATGTTGC  58

seq1  TTTTCTCAT---GAGAATCTCT-GACACTGCTTTCCTCCATTATTTATTT  544
      || | ||||   |  | || || |||| |    |   |||  |  |||||
seq2  TTATATCATTTGGCCATTCCCTGGACATTTACATTGGCCA--ACATATTT  106

seq1  TT---TTCTTTCATTAG----ATATTTTCTTTATTTACATTTTAAATACT  587
       |       |  |  ||    | || ||  ||| |  ||| |     | |
seq2  CTGGAAGGATAAAGAAGAAAAAGATCTTGCTTAGT--CATCTATGGCAGT  154

seq1  A-TTCCCT--CTTCAGTTCTTCTTCTTCTTCTTCTTCTTCTTCT-TCTTC  633
      | ||| ||  |  | |||||  ||  | ||    |||  ||||| |  ||
seq2  AGTTCTCTGACCACTGTTCTGGTTAGTGTTGGCATTC--CTTCTATGCTC  202

seq1  TTCTTCTTCTTTTTCTT--CTTCTTCTTCTTCATCTTCTTCTTCT-----  676
      | |  |  |  || | |  |  |  |    |   | |    | ||     
seq2  TGC-CCAACAGTTACCTAGCAACAGCCAGGTAGGCCTGGGTTGCTATGAA  251

seq1  ----TCTTCTTCTCCT-GCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCT  721
           ||  ||  |||  ||| ||||   |||    |||| |   | |||
seq2  AGGGACTGTTTGGCCTCTCTCTTTCTGAATCTTTGACTCC-CTGACCCCT  300

seq1  TCTTCTCTCTCT--CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  769
      | | || || ||  ||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCCCTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350

seq1  CTCTCTCTCTCTCTCTCTCTCC  791
      |||||||||             
seq2  CTCTCTCTCC------------  360