BAC Information

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BAC

Clone NameB6Ng01-150C22
Chromosome8 (Build37)
Map Location 5,384,880 - 5,529,177
singlet/doubletdoublet
Overlap geneLOC623409
Upstream geneLOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150C22.bB6Ng01-150C22.g
ACCDH946328DH946329
length1,1211,184
definitionDH946328|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C22, 5' end.DH946329|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,384,880 - 5,386,017)(5,527,976 - 5,529,177)
sequence
gaattccaagaatctagtagttgttcagtcacatgagtctagttgtttaa
actggtcttctgtagaagttgattccaacagatgtgctggcaagtaagtg
aaatatgttgaacaatgaaaattccttctttcaatgtccttatgtaggtc
gccagtagaaggtgtggcccagattaaaggtgtgtaccaccacacccaga
tctggaatttgctttgttccaggctatcttgaactcagatatctctgcct
cagtctcctgggatttaatgtgtgtgctactttgggcttaagcttttcgt
ggccactatgccttgagatctccatcaaaagatccaggtcagaagattat
gtcttctagcctcaagatctggatcataggtatgttcttcaattctggat
tgtagttcattccaaatgtgctcaagttgaccaccaggaatagccaccat
tcttgatctattggggaaatacaaatcatcatatataccccattgttctc
aactggaaatttaaagttggagataaacacagttcctacagtgtaacagt
gtccacaatattggagttgacatagaaagtggggtcagtcaagatgttct
gtcctgcaaagaggtagaggagatgattttaggttgcaggagacatcctc
caaccacatattattgttgaataacaaatcatcaacatgtccctttctaa
ttattatgtcatctaattttcacatgcagaaagtggagaagacagggctt
tgggactttctttcacgccatcaatacaaaattatcacagctgacttaca
gctaccaggtacagaaggaagcagcagcacccagttggcatctcatgcca
cttatgtatatgatttgaggattttttttcatattaattttctgctgaca
tataagttggtactatttttataaatataaaggaagaaagtacagcagat
ttgaattatgagtgtagtgtagtttcttattaacatgctagctccagtac
cttaaatacagagattttcatgaaatataatttccaatttatttattcgg
agcgatgaaaagtatctctctgaattacaactgttgtatttctttaggac
attctgtctctcaattctccc

gaattctacttgggagtcagttatttgattacatattgagcatcttcaac
cttttcttaatatttcctctattccaattgtgtgatagaaaattagcctg
ctctgaagattacagtggtttttatttattttttttttcaatttaagatt
aaggctttcattatttcctaatgtgaggaagtagatatagtcttgccttt
gtaatctctaaagttatatgtaactctttctttttctacccaatgaaact
atttttctgagctcatgaccagcccctattgtttggccatttcagccaac
ccattacaaacacagactttcaaatattctcctttctatagtgattgtct
ttccttgcaactcataggattccttttatactctccctgcacatgactca
agcctgggaagtgaccataacaaaaggcttttgcccaataacattcacat
ctaataacttcctagactaaaattatcctctcattctatgtcacctaccc
tcttccactgttatagcctagactacctcatgtctaaattaacagtaaaa
acattctttcccttttttttcagcttttagaaacttttttttctttctac
ctatttcctctttgctcaggtgtctgtagagcagctcaggaccactcagt
ggtggctccaacacactcagtgccctgtgctttgggagggtgcacactcc
agtcttccgtggggaactgctggatgggcacagagggtacctgtacaccc
tcaggccacctcagctaagcagcagtgaacttaggagctggtgtggccaa
ttcaccctggaattctttggtcacaaccttctcagcagcagcccgctccc
tcttctcaatctcctctggatctccggaaaagtaaagatcaggcatgacc
tcccatggtgctcaacaggagatagtacctcacatgtggagtacttccct
ggccagcatccaccacatcagacccactgagtgagctcccttgttgtgca
tgggatggcaatgtccacgtagcgcatggggatttgtgctacacagagcc
attggtggcagtgacattaagagccctctttgaggggccgatggtcagcc
ttgaatcgtcaacacataaagctgttcgtccttgagcgtctggatctgta
tgaaggtccaggtgaacggccactctatggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5384880_5386017
seq2: B6Ng01-150C22.b_45_1165

seq1  GAATTCCAAGAATCTAGTAGTTGTTCAGTCACATGAGTCTAGTTGTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAATCTAGTAGTTGTTCAGTCACATGAGTCTAGTTGTTTAA  50

seq1  ACTGGTCTTCTGTAGAAGTTGATTCCAACAGATGTGCTGGCAAGTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTTCTGTAGAAGTTGATTCCAACAGATGTGCTGGCAAGTAAGTG  100

seq1  AAATATGTTGAACAATGAAAATTCCTTCTTTCAATGTCCTTATGTAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTGAACAATGAAAATTCCTTCTTTCAATGTCCTTATGTAGGTC  150

seq1  GCCAGTAGAAGGTGTGGCCCAGATTAAAGGTGTGTACCACCACACCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGAAGGTGTGGCCCAGATTAAAGGTGTGTACCACCACACCCAGA  200

seq1  TCTGGAATTTGCTTTGTTCCAGGCTATCTTGAACTCAGATATCTCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTTGCTTTGTTCCAGGCTATCTTGAACTCAGATATCTCTGCCT  250

seq1  CAGTCTCCTGGGATTTAATGTGTGTGCTACTTTGGGCTTAAGCTTTTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCTGGGATTTAATGTGTGTGCTACTTTGGGCTTAAGCTTTTCGT  300

seq1  GGCCACTATGCCTTGAGATCTCCATCAAAAGATCCAGGTCAGAAGATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTATGCCTTGAGATCTCCATCAAAAGATCCAGGTCAGAAGATTAT  350

seq1  GTCTTCTAGCCTCAAGATCTGGATCATAGGTATGTTCTTCAATTCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAGCCTCAAGATCTGGATCATAGGTATGTTCTTCAATTCTGGAT  400

seq1  TGTAGTTCATTCCAAATGTGCTCAAGTTGACCACCAGGAATAGCCACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCATTCCAAATGTGCTCAAGTTGACCACCAGGAATAGCCACCAT  450

seq1  TCTTGATCTATTGGGGAAATACAAATCATCATATATACCCCATTGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTATTGGGGAAATACAAATCATCATATATACCCCATTGTTCTC  500

seq1  AACTGGAAATTTAAAGTTGGAGATAAACACAGTTCCTACAGTGTAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAATTTAAAGTTGGAGATAAACACAGTTCCTACAGTGTAACAGT  550

seq1  GTCCACAATATTGGAGTTGACATAGAAAGTGGGGTCAGTCAAGATGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAATATTGGAGTTGACATAGAAAGTGGGGTCAGTCAAGATGTTCT  600

seq1  GTCCTGCAAAGAGGTAGAGGAGATGATTTTAGGTTGCAGGAGACATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAAAGAGGTAGAGGAGATGATTTTAGGTTGCAGGAGACATCCTC  650

seq1  CAACCACATATTATTGTTGAATAACAAATCATCAACATGTCCCTTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATATTATTGTTGAATAACAAATCATCAACATGTCCCTTTCTAA  700

seq1  TTATTATGTCATCTAATTTTCACATGCAGAAAGTGGAGAAGACAGGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTCATCTAATTTTCACATGCAGAAAGTGGAGAAGACAGGGCTT  750

seq1  TGGGACTTTCTTTCAGGCCATCAATACAAAATTATCACAGCTGACTTACA  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGGACTTTCTTTCACGCCATCAATACAAAATTATCACAGCTGACTTACA  800

seq1  GCTACCAGGTACAGAAGGAAGCAGCAGCACCCAGTTGGCATCTCATGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGGTACAGAAGGAAGCAGCAGCACCCAGTTGGCATCTCATGCCA  850

seq1  CTTATGTATATGATTTGAGGATTTTTTTTCATATTAATTTTCTGCTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTATATGATTTGAGGATTTTTTTTCATATTAATTTTCTGCTGACA  900

seq1  TATAAGGTTGGTACTATTTTTATAAATAATAAAGGAAGAAAGTACAGCAG  950
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATAA-GTTGGTACTATTTTTATAAAT-ATAAAGGAAGAAAGTACAGCAG  948

seq1  ATTTGAATTAATGAGTGTAGTGTAGTTTTCTTATTTAACATGCTAGCTCC  1000
      ||||||||| ||||||||||||||| ||||||| ||||||||||||||||
seq2  ATTTGAATT-ATGAGTGTAGTGTAG-TTTCTTA-TTAACATGCTAGCTCC  995

seq1  AGTACCTTAAATACAGGAGATTTTCAATGAAATTATAATTTTCAAATATA  1050
      ||||||||||||||| ||||||||| |||||| ||||| |||| ||| ||
seq2  AGTACCTTAAATACA-GAGATTTTC-ATGAAA-TATAA-TTTCCAATTTA  1041

seq1  TTTATTCAGAGCAGATTGAGAGAAGTATCTCTCTGAAATATACAAACTGT  1100
      ||||||| |||| |||   || ||||||||||||||| ||    ||||||
seq2  TTTATTCGGAGC-GAT---GAAAAGTATCTCTCTGAATTA---CAACTGT  1084

seq1  TGTATTTTCTTTAGGACATTCTGTC-CTCACATTCTCCC  1138
      |||| |||||||||||||||||||| |||| ||||||||
seq2  TGTA-TTTCTTTAGGACATTCTGTCTCTCA-ATTCTCCC  1121


seq1: chr8_5527976_5529177
seq2: B6Ng01-150C22.g_66_1249 (reverse)

seq1  CACTCCAATTGA-TGGCCGCTTCACACCTGGAACCTTCACTAACCAGATC  49
      |||||| || || |||||| |   ||||||| ||||||| ||  ||||||
seq2  CACTCC-ATAGAGTGGCCGTT---CACCTGG-ACCTTCA-TA--CAGATC  42

seq1  CAAGCAGCCTTCAGGGAGCCACAGCTTCTAGTGGTGACCGATCCCAGGGC  99
      | ||  ||  ||| |||   |||||||   ||| ||| ||||  || |||
seq2  C-AGACGC--TCAAGGACGAACAGCTTTATGTGTTGA-CGAT-TCAAGGC  87

seq1  TGACCATCAGCCCCTCAAAGAGGCCTCTT-ATGTCAACCTGCCCACCATT  148
      |||||||| |||||||||||||| ||||| ||||||  |||||  | || 
seq2  TGACCATCGGCCCCTCAAAGAGGGCTCTTAATGTCA--CTGCCACCAATG  135

seq1  GCTCTGTGTAGCACAGATTCTCCCCTGCGCTACGTGGACATTGCCATCCC  198
      ||||||||||||||| ||   ||| |||||||||||||||||||||||||
seq2  GCTCTGTGTAGCACAAAT--CCCCATGCGCTACGTGGACATTGCCATCCC  183

seq1  ATGCAACAACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGATGCTGG  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGC-ACAACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGATGCTGG  232

seq1  CCAGGGAAGTACTCCACATGTGAGGTACTATCTCCTGTTGAGCACCCATG  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAGGGAAGTACTCCACATGTGAGGTACTATCTCCTGTTGAGCA-CCATG  281

seq1  GGAGGTCATGCCTGATCTTTACTTTTCCGGAGATCCAGAGGAGATTGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCATGCCTGATCTTTACTTTTCCGGAGATCCAGAGGAGATTGAGA  331

seq1  AGAGGGAGCGGGCTGCTGCTGAGAAGGTTGTGACCAAAGAATTCCAGGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGCGGGCTGCTGCTGAGAAGGTTGTGACCAAAGAATTCCAGGGT  381

seq1  GAATTGGCCACACCAGCTCCTAAGTTCACTGCTGCTTAGCCTGAGGTGGC  448
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATTGGCCACACCAGCTCCTAAGTTCACTGCTGCTTAG-CTGAGGTGGC  430

seq1  CTGAGGGTGTACAGGTACCCTCTGTGCCCATCCAGCAGTTCCCCACGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTGTACAGGTACCCTCTGTGCCCATCCAGCAGTTCCCCACGGAA  480

seq1  GACTGGAGTGTGCACCCTCCCAAAGCACAGGGCACTGAGTGTGTTGGAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGTGTGCACCCTCCCAAAGCACAGGGCACTGAGTGTGTTGGAGC  530

seq1  CACCACTGAGTGGTCCTGAGCTGCTCTACAGACACCTGAGCAAAGAGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGAGTGGTCCTGAGCTGCTCTACAGACACCTGAGCAAAGAGGAA  580

seq1  ATAGGTAGAAAGAAAAAAAAGTTTCTAAAAGCTGAAAAAAAAGGGAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAGAAAGAAAAAAAAGTTTCTAAAAGCTGAAAAAAAAGGGAAAGA  630

seq1  ATGTTTTTACTGTTAATTTAGACATGAGGTAGTCTAGGCTATAACAGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTACTGTTAATTTAGACATGAGGTAGTCTAGGCTATAACAGTGG  680

seq1  AAGAGGGTAGGTGACATAGAATGAGAGGATAATTTTAGTCTAGGAAGTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTAGGTGACATAGAATGAGAGGATAATTTTAGTCTAGGAAGTTA  730

seq1  TTAGATGTGAATGTTATTGGGCAAAAGCCTTTTGTTATGGTCACTTCCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTGAATGTTATTGGGCAAAAGCCTTTTGTTATGGTCACTTCCCA  780

seq1  GGCTTGAGTCATGTGCAGGGAGAGTATAAAAGGAATCCTATGAGTTGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGTCATGTGCAGGGAGAGTATAAAAGGAATCCTATGAGTTGCAA  830

seq1  GGAAAGACAATCACTATAGAAAGGAGAATATTTGAAAGTCTGTGTTTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACAATCACTATAGAAAGGAGAATATTTGAAAGTCTGTGTTTGTA  880

seq1  ATGGGTTGGCTGAAATGGCCAAACAATAGGGGCTGGTCATGAGCTCAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGGCTGAAATGGCCAAACAATAGGGGCTGGTCATGAGCTCAGAA  930

seq1  AAATAGTTTCATTGGGTAGAAAAAGAAAGAGTTACATATAACTTTAGAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTCATTGGGTAGAAAAAGAAAGAGTTACATATAACTTTAGAGA  980

seq1  TTACAAAGGCAAGACTATATCTACTTCCTCACATTAGGAAATAATGAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGGCAAGACTATATCTACTTCCTCACATTAGGAAATAATGAAAG  1030

seq1  CCTTAATCTTAAATTGAAAAAAAAAATAAATAAAAACCACTGTAATCTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCTTAAATTGAAAAAAAAAATAAATAAAAACCACTGTAATCTTC  1080

seq1  AGAGCAGGCTAATTTTCTATCACACAATTGGAATAGAGGAAATATTAAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCTAATTTTCTATCACACAATTGGAATAGAGGAAATATTAAGA  1130

seq1  AAAGGTTGAAGATGCTCAATATGTAATCAAATAACTGACTCCCAAGTAGA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGAAGATGCTCAATATGTAATCAAATAACTGACTCCCAAGTAGA  1180

seq1  ATTC  1202
      ||||
seq2  ATTC  1184


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