BAC Information

Click to search

BAC

Clone NameB6Ng01-150G23
Chromosome8 (Build37)
Map Location 53,652,976 - 53,825,930
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150G23.bB6Ng01-150G23.g
ACCDH946515DH946516
length935739
definitionDH946515|Mus musculus domesticus DNA, BAC clone: B6Ng01-150G23, 5' end.DH946516|Mus musculus domesticus DNA, BAC clone: B6Ng01-150G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,652,976 - 53,653,912)(53,825,195 - 53,825,930)
sequence
gaattcaagtaaatccaaaattggatagcgttgtttggaataatgtgttt
ccctcaaaagctttagggtttctttctaaaaattattttattttaatata
tgtatgtcttcaatatacttaaaacacatgtcacagacacacgtgtctta
aactacaaaatgcctgtcttcctgctggtttgacctgggttcagactccc
actggcctgtcctcacagctaccaacatcaatgcttttaccctagggcaa
tgtgtctagaattgctttctgggtccttagaattgctatttggttcctaa
agtgttgttttattttcactgctttgaaaaccatgtcccttattaagtca
attccacaaatatcctgtgtatcaccaaggagatacccaaaccacaagca
gcatacctatctgaactgcactgaaatgtgaaatttctgatgtagaacac
tgtatttgatatgctcatgaaaatggcactggccacatatgtggcagagg
atgaccttgttggacatcattgggaggagtgacccttgggcctaaagtta
ttcgatgccccagtgtagggaatgccagggctaaagaaccaaagtggatg
gggtatgaccctcatagatacaggggggagagtgaatgggataggggttt
tctgaaggggagaccaggaaatggggaaacatttgaaatgtaaataaaga
aaatccactaaaaagaaaagaaaaaacaaggcatttgtcattaaacacat
tttaatagtaagtgaaacaaagaagaggttgcttcagaaatcattcagtg
agaattgaggcatatggaaaatgggaaacttgaagggaacaggagaaaga
tctaggattgcagtaaactgcaagaagaatgcttccttatagaaaagatt
acctttaccttagattttccaacaacacatgaaaa
gaattcctagtaacattttttgtctcactaaattgtactaggggttatcc
tgatagaaattcagaaatattgatatatcattcttatatttcatctaccc
cctcctggcttttatttatcatattattgtgaaattatgagagcacacag
ttttcaaatctactgatatctttcaataccgggccttattgggcttactt
tttgatcttccaattcacttttcagagagattcatttacacagtttgtcc
atatatacaaattatacacagtcttactaggttgccatatttcaaatgct
caaacatttatttatgtagttttgactgtttcataaagcattgaaatgtc
tgaccattcctccttaagatataaattttatagtcatggatattgtatgg
ttaccacttcggaaattcgggtacactgtatttttgtagatttttttcat
attcataatcacatatttattccttaaattttaatgaaattttatgtgta
ctatttcaccggtgtatttaatttctttctttatggtcacttataaaaaa
cagacttaaactctgctgtatctttgtggcagtggttatactgtctgtct
gtctccccctttcccctctgtgtgtgtctgtggttgtgtgtgggtatgta
gggttattggggtcccatgtttccctctgccacaggacttggtctctggg
ggaggcaggaatgggaagttgactcttgcttaatccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53652976_53653912
seq2: B6Ng01-150G23.b_47_981

seq1  GAATTCAAGTAAATCCAAAATTGGATAGCGTTGTTTGGAATAATGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAAATCCAAAATTGGATAGCGTTGTTTGGAATAATGTGTTT  50

seq1  CCCTCAAAAGCTTTAGGGTTTCTTTCTAAAAATTATTTTATTTTAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAAGCTTTAGGGTTTCTTTCTAAAAATTATTTTATTTTAATATA  100

seq1  TGTATGTCTTCAATATACTTAAAACACATGTCACAGACACACGTGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCTTCAATATACTTAAAACACATGTCACAGACACACGTGTCTTA  150

seq1  AACTACAAAATGCCTGTCTTCCTGCTGGTTTGACCTGGGTTCAGACTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAAAATGCCTGTCTTCCTGCTGGTTTGACCTGGGTTCAGACTCCC  200

seq1  ACTGGCCTGTCCTCACAGCTACCAACATCAATGCTTTTACCCTAGGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTGTCCTCACAGCTACCAACATCAATGCTTTTACCCTAGGGCAA  250

seq1  TGTGTCTAGAATTGCTTTCTGGGTCCTTAGAATTGCTATTTGGTTCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTAGAATTGCTTTCTGGGTCCTTAGAATTGCTATTTGGTTCCTAA  300

seq1  AGTGTTGTTTTATTTTCACTGCTTTGAAAACCATGTCCCTTATTAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTTTTATTTTCACTGCTTTGAAAACCATGTCCCTTATTAAGTCA  350

seq1  ATTCCACAAATATCCTGTGTATCACCAAGGAGATACCCAAACCACAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAAATATCCTGTGTATCACCAAGGAGATACCCAAACCACAAGCA  400

seq1  GCATACCTATCTGAACTGCACTGAAATGTGAAATTTCTGATGTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTATCTGAACTGCACTGAAATGTGAAATTTCTGATGTAGAACAC  450

seq1  TGTATTTGATATGCTCATGAAAATGGCACTGGCCACATATGTGGCAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGATATGCTCATGAAAATGGCACTGGCCACATATGTGGCAGAGG  500

seq1  ATGACCTTGTTGGACATCATTGGGAGGAGTGACCCTTGGGCCTAAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTGTTGGACATCATTGGGAGGAGTGACCCTTGGGCCTAAAGTTA  550

seq1  TTCGATGCCCCAGTGTAGGGAATGCCAGGGCTAAAGAACCAAAGTGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATGCCCCAGTGTAGGGAATGCCAGGGCTAAAGAACCAAAGTGGATG  600

seq1  GGGTATGACCCTCATAGATACAGGGGGGAGAGTGAATGGGATAGGGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGACCCTCATAGATACAGGGGGGAGAGTGAATGGGATAGGGGTTT  650

seq1  TCTGAAGGGGAGACCAGGAAATGGGGAAACATTTGAAATGTAAATAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGGGAGACCAGGAAATGGGGAAACATTTGAAATGTAAATAAAGA  700

seq1  AAATCCACT-AAAAGAAAAGAAAAAACAAGGCATTTGTCATT-AACACAT  748
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  AAATCCACTAAAAAGAAAAGAAAAAACAAGGCATTTGTCATTAAACACAT  750

seq1  TTTAATAGTAAGTGAAACAAAGAAGAGGTTGCTTCAGAAATCATTCAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGTAAGTGAAACAAAGAAGAGGTTGCTTCAGAAATCATTCAGTG  800

seq1  AGAATTGAGGCAGGATGGAAAAATGGGAAACTTGAAGGGAACAGGAGAAA  848
      ||||||||||||  |||| |||||||||||||||||||||||||||||||
seq2  AGAATTGAGGCA-TATGG-AAAATGGGAAACTTGAAGGGAACAGGAGAAA  848

seq1  GATCTAGGATTGCAGTAAAACTGCAAGAAGAATGCTCACTTAGAGAAAAG  898
      |||||||||||||||| |||||||||||||||||||  |||| |||||||
seq2  GATCTAGGATTGCAGT-AAACTGCAAGAAGAATGCTTCCTTATAGAAAAG  897

seq1  ATTA-CATTACCTAAGATATTTCAAACAACAGCATGAAAA  937
      |||| | |||||| |||| |||| ||||||| ||||||||
seq2  ATTACCTTTACCTTAGAT-TTTCCAACAACA-CATGAAAA  935

seq1: chr8_53825195_53825930
seq2: B6Ng01-150G23.g_65_802 (reverse)

seq1  GTGGATTAAGC-AGAGTCAACTTCCCATGTCCTGCCT-CCCCAGAGACCG  48
      ||||||||||| |||||||||||||||| |||||||| ||||||||||| 
seq2  GTGGATTAAGCAAGAGTCAACTTCCCAT-TCCTGCCTCCCCCAGAGACCA  49

seq1  AGTCCTGTGGCAGAGGG-AACATGGGACCCCAATAACCCTACATACCCAC  97
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTCCTGTGGCAGAGGGAAACATGGGACCCCAATAACCCTACATACCCAC  99

seq1  ACACAACCACAGACACACACAGAGGGGAAAGGGGGAGACAGACAGACAGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACCACAGACACACACAGAGGGGAAAGGGGGAGACAGACAGACAGT  149

seq1  ATAACCACTGCCACAAAGATACAGCAGAGTTTAAGTCTGTTTTTTATAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACTGCCACAAAGATACAGCAGAGTTTAAGTCTGTTTTTTATAAG  199

seq1  TGACCATAAAGAAAGAAATTAAATACACCGGTGAAATAGTACACATAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATAAAGAAAGAAATTAAATACACCGGTGAAATAGTACACATAAAA  249

seq1  TTTCATTAAAATTTAAGGAATAAATATGTGATTATGAATATGAAAAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAAATTTAAGGAATAAATATGTGATTATGAATATGAAAAAAAT  299

seq1  CTACAAAAATACAGTGTACCCGAATTTCCGAAGTGGTAACCATACAATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAAATACAGTGTACCCGAATTTCCGAAGTGGTAACCATACAATAT  349

seq1  CCATGACTATAAAATTTATATCTTAAGGAGGAATGGTCAGACATTTCAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTATAAAATTTATATCTTAAGGAGGAATGGTCAGACATTTCAAT  399

seq1  GCTTTATGAAACAGTCAAAACTACATAAATAAATGTTTGAGCATTTGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGAAACAGTCAAAACTACATAAATAAATGTTTGAGCATTTGAAA  449

seq1  TATGGCAACCTAGTAAGACTGTGTATAATTTGTATATATGGACAAACTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAACCTAGTAAGACTGTGTATAATTTGTATATATGGACAAACTGT  499

seq1  GTAAATGAATCTCTCTGAAAAGTGAATTGGAAGATCAAAAAGTAAGCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAATCTCTCTGAAAAGTGAATTGGAAGATCAAAAAGTAAGCCCA  549

seq1  ATAAGGCCCGGTATTGAAAGATATCAGTAGATTTGAAAACTGTGTGCTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCCGGTATTGAAAGATATCAGTAGATTTGAAAACTGTGTGCTCT  599

seq1  CATAATTTCACAATAATATGATAAATAAAAGCCAGGAGGGGGTAGATGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTCACAATAATATGATAAATAAAAGCCAGGAGGGGGTAGATGAA  649

seq1  ATATAAGAATGATATATCAATATTTCTGAATTTCTATCAGGATAACCCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAATGATATATCAATATTTCTGAATTTCTATCAGGATAACCCCT  699

seq1  AGTACAATTTAGTGAGACAAAAAATGTTACTAGGAATTC  736
      |||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATTTAGTGAGACAAAAAATGTTACTAGGAATTC  738