BAC Information

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BAC

Clone NameB6Ng01-151A12
Chromosome1 (Build37)8 (Build37)
Map Location 50,832,232 - 50,832,71955,608,691 - 55,609,783
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151A12.bB6Ng01-151A12.g
ACCDH946958DH946959
length7151,094
definitionDH946958|Mus musculus domesticus DNA, BAC clone: B6Ng01-151A12, 5' end.DH946959|Mus musculus domesticus DNA, BAC clone: B6Ng01-151A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,232 - 50,832,719)(55,608,691 - 55,609,783)
sequence
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccatcctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcctattgacggtgtcttttgccttgcagaagctttgcagtctca
tgaggtcccatttgtcaatcctcgatcttaaagcacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagagaggaatgggtcaattcgc
attctacataataacaatcagttgtgccagcaccatttgttgaaaatgct
gtcttttttccactggatggttttagctcccttgtcgaagatcaagtgat
catagttgtatgggtttatttctgggtcttcaattctattccattggtct
acttgtctgtcactataccagtaccatgcagtttttatcacaattgctct
gtagtaaagttttaggtcaggcatgttgattccaccagaggtacttttat
ccttgagaagagtttttgctatcctaggttttttgttattccagatgaat
gtgcagattgctctt
gaattccagcgtttggtacaacgttccaggagagcgtcagagtgacattc
ctgtttcccctacaaaaggatggaataagcaaaggttagcagaacttgtc
atttaaggaaaatttcaatcaagtgctattgggccatacacttcatctgt
aactagctgtttctaatagacaaaacataacaatttttttatgaaatcca
cagatagcactagaagacatcaacatgaaattcacaggtagcctagatga
ccagcataaattcacacctgcagctatttaccaataaaaaaagcttacat
gaatagaacacaacaaggagaaaacgagactcaggctaggaatcaaaagg
caatagtgtgaaatctaattttgccattatttagaggtgcaaactgaagc
agatcaaaatctatcaaaatccatgttatttgcacatccaaaggtgtgat
tagttcaaatcttataaagcaaaggtcaaaatggcctgagatcccaatca
tcagtcattctgatttcctcttcttctaaagagtaaactgaatttttgga
ggggaggggagaggggaataagttaaagaagcaacattagaatcccaggt
ctccacccaccacactgactcctcatgcaggctcctgactcgagttcaga
tagcagagctataaagtaacagtggcgcccctcccacacatgagaaagca
ccctccccctgagtgtccctgtatattcaatagtaacagctattgcacgg
gttaattgtctgtctatgacacatgatatagtgatcttaggacagggaac
tgcagtgaggatccccattaaagtcgcgggaagcaagcttacgggtatga
ccaactgaagactgatgtgaaggagtaaccctgctgtgccaggtgccatc
aaaggacaggaattctggggtgtagaccaaagcaaaatgatgaaattaac
gagaggcatttcatccactgtctgcctcaattctcaacaatgacttccac
ttaatagaaaactgaaacagtagacttgctttgcttgttgttaattatac
tattagaaatgctaaactgttacagccagagacttttattgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832232_50832719
seq2: B6Ng01-151A12.b_49_534 (reverse)

seq1  GACAGGGGAGCTAAAGCCATTCAGTGGAAAAAAGACAGCATTTTCAACAA  50
      |||| |||||||||| |||| |||||||||||||||||||||||||||||
seq2  GACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAA  50

seq1  ATGGTGCTGGCACAACTGGCGGTTATCATGCAGAAGAATGTGAAATGATT  100
      ||||||||||||||||||   ||||| ||   | |||||| ||| |||  
seq2  ATGGTGCTGGCACAACTGATTGTTATTAT---GTAGAATGCGAATTGACC  97

seq1  CATTCCTATCTCCTTGTAGTAATGCCAAATCTAAGTGGATTAAGGAACTC  150
      ||||||| |||||||||| ||| | ||||||||||||||| |||||||||
seq2  CATTCCTCTCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTC  147

seq1  CACTTAAAACCAGAGACACTGAAACTTATAGAGGAGAAGGTGGGGAAAAG  200
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  197

seq1  CCTCCAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGG  250
       ||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTCGAAGATATGGGCACAGGGAAAAAATTCCTGAATAGAACAGCAATGG  247

seq1  CTTGTGCTGTAAGATTGAGAATGGACAAATGGGAACTCATAAAGTTGCAA  300
      |||||||| |||||| ||| || ||||||||||| ||||| |   |||||
seq2  CTTGTGCTTTAAGATCGAGGATTGACAAATGGGACCTCATGAGACTGCAA  297

seq1  ACCTTCTGTAAGGCAAAAGACACCTTCAATAAGACAAAAAGGCCACCAAC  350
      | |||||| ||||||||||||||| |||||| ||||||||| ||||||||
seq2  AGCTTCTGCAAGGCAAAAGACACCGTCAATAGGACAAAAAGACCACCAAC  347

seq1  AGATTGGGAGAGGATCTTTACCTATCCTAAATCAAATAGGGGACTAAGAT  400
      ||||||||| |||||||||||||||| ||||||| |||||||||||| ||
seq2  AGATTGGGAAAGGATCTTTACCTATCTTAAATCAGATAGGGGACTAATAT  397

seq1  CCAATATATATAAAGAACTTAAGAAGGTGGATTCCAGAAAATCAAATAAC  450
      ||||||||||||||||||| |||| | |||| |||||||||||||||| |
seq2  CCAATATATATAAAGAACTCAAGAGGATGGACTCCAGAAAATCAAATAGC  447

seq1  CCCATTAAAA-ATGGGGCTCAGAGCTGAACAATGAATTC  488
      ||| |||||| ||||||||||||||||||||| ||||||
seq2  CCCCTTAAAAGATGGGGCTCAGAGCTGAACAAAGAATTC  486

seq1: chr8_55608691_55609783
seq2: B6Ng01-151A12.g_66_1159

seq1  GAATTCCAGCGTTTGGTACAACGTTCCAGGAGAGCGTCAGAGTGACATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGTTTGGTACAACGTTCCAGGAGAGCGTCAGAGTGACATTC  50

seq1  CTGTTTCCCCTACAAAAGGATGGAATAAGCAAAGGTTAGCAGAACTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCCCTACAAAAGGATGGAATAAGCAAAGGTTAGCAGAACTTGTC  100

seq1  ATTTAAGGAAAATTTCAATCAAGTGCTATTGGGCCATACACTTCATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGAAAATTTCAATCAAGTGCTATTGGGCCATACACTTCATCTGT  150

seq1  AACTAGCTGTTTCTAATAGACAAAACATAACAATTTTTTTATGAAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTGTTTCTAATAGACAAAACATAACAATTTTTTTATGAAATCCA  200

seq1  CAGATAGCACTAGAAGACATCAACATGAAATTCACAGGTAGCCTAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCACTAGAAGACATCAACATGAAATTCACAGGTAGCCTAGATGA  250

seq1  CCAGCATAAATTCACACCTGCAGCTATTTACCAATAAAAAAAGCTTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATAAATTCACACCTGCAGCTATTTACCAATAAAAAAAGCTTACAT  300

seq1  GAATAGAACACAACAAGGAGAAAACGAGACTCAGGCTAGGAATCAAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAACACAACAAGGAGAAAACGAGACTCAGGCTAGGAATCAAAAGG  350

seq1  CAATAGTGTGAAATCTAATTTTGCCATTATTTAGAGGTGCAAACTGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGTGAAATCTAATTTTGCCATTATTTAGAGGTGCAAACTGAAGC  400

seq1  AGATCAAAATCTATCAAAATCCATGTTATTTGCACATCCAAAGGTGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAATCTATCAAAATCCATGTTATTTGCACATCCAAAGGTGTGAT  450

seq1  TAGTTCAAATCTTATAAAGCAAAGGTCAAAATGGCCTGAGATCCCAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAAATCTTATAAAGCAAAGGTCAAAATGGCCTGAGATCCCAATCA  500

seq1  TCAGTCATTCTGATTTCCTCTTCTTCTAAAGAGTAAACTGAATTTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATTCTGATTTCCTCTTCTTCTAAAGAGTAAACTGAATTTTTGGA  550

seq1  GGGGAGGGGAGAGGGGAATAAGTTAAAGAAGCAACATTAGAATCCCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGAGAGGGGAATAAGTTAAAGAAGCAACATTAGAATCCCAGGT  600

seq1  CTCCACCCACCACACTGACTCCTCATGCAGGCTCCTGACTCGAGTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCACCACACTGACTCCTCATGCAGGCTCCTGACTCGAGTTCAGA  650

seq1  AAGCAGAGCTATAAGGTAACAGTGGCGCCCCTCCCACACATGAGAAAGCA  700
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGCTATAAAGTAACAGTGGCGCCCCTCCCACACATGAGAAAGCA  700

seq1  CCCTCCCCCTGAGTGTCCCTGTATATTCAATAGTAACAGCTATTGCACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCTGAGTGTCCCTGTATATTCAATAGTAACAGCTATTGCACGG  750

seq1  GTTAATTGTCTGTCAATGACACAGGATATAGTGATCTCAGGAGAGGGAAC  800
      |||||||||||||| |||||||| ||||||||||||| |||| |||||||
seq2  GTTAATTGTCTGTCTATGACACATGATATAGTGATCTTAGGACAGGGAAC  800

seq1  TGCAAGTGAGGAGCCCCATTAGACTGGCAGGCAGGCAAGCTTACGGGGCA  850
      ||| |||||||| |||||||| | | || || | |||||||||| ||| |
seq2  TGC-AGTGAGGATCCCCATTAAAGTCGC-GGGAAGCAAGCTTAC-GGGTA  847

seq1  TTAATAACTGATGACTGATGTGAAGGATTTATCCTGCTGTGTGTGGTGCC  900
      | |  |||||| ||||||||||||||| | | |||||||||   ||||||
seq2  TGACCAACTGAAGACTGATGTGAAGGAGTAACCCTGCTGTGCCAGGTGCC  897

seq1  ATCCTTGGACAGGTAGTCTGGGGTGTAGACGAAAGCAAACTGAGGAAGTT  950
      |||   ||||||| | |||||||||||||| |||||||| ||| ||| ||
seq2  ATCAAAGGACAGGAATTCTGGGGTGTAGACCAAAGCAAAATGATGAAATT  947

seq1  AACGAGAGGCATTTC-TCCAGTGTCTGCCTCAGTTCTC-GCCTTGGCTTC  998
      ||||||||||||||| |||| ||||||||||| |||||  |  || ||||
seq2  AACGAGAGGCATTTCATCCACTGTCTGCCTCAATTCTCAACAATGACTTC  997

seq1  C-CCTAATGATAAACTGTAACCTGTAAGCCTTG-TTTCCTGGTGCTTTAT  1046
      | | ||||   |||||| || | || || |||| ||| || ||  || ||
seq2  CACTTAATAGAAAACTG-AAACAGT-AGACTTGCTTTGCTTGTTGTTAAT  1045

seq1  TATAGCAATAGAAA-GC-AAACTGTAACAGCGGTGGACTTTTATTGTGA  1093
      ||||  | |||||| || ||||||| |||||    ||||||||||||||
seq2  TATACTATTAGAAATGCTAAACTGTTACAGCCAGAGACTTTTATTGTGA  1094