BAC Information

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BAC

Clone NameB6Ng01-152E16
Chromosome8 (Build37)
Map Location 111,872,473 - 112,044,719
singlet/doubletdoublet
Overlap geneLOC100042829, Pmfbp1
Upstream geneAtbf1, 4922502B01Rik, Gm1943
Downstream geneDhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152E16.bB6Ng01-152E16.g
ACCDH947901DH947902
length526941
definitionDH947901|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E16, 5' end.DH947902|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,872,473 - 111,873,004)(112,043,786 - 112,044,719)
sequence
atgccagtggatttaaaaacatttctactgtacttttttcgcagaaacat
ataaactaagacaacaattcagagataggatgtaggcccgtggtagagca
cttgtctagagtatataagcccagcgaccaaattcctaatcacaaaggac
tccacagcaggccatgtctgcagttactggaatggcgctgtttaagtctt
tctgtctgtcgccttgatggtgttttcagaatgcgggcagagcagtatat
caaatgttgctgaacacactgatgccacaccctctgacataaacttgatt
ggagctcagcgtagtttatgtattttatttccttctgcctgacctctttg
tctctctccgctgagccagaacgaggttggagagaagatggatataacct
gtggtgtgcctcagactagtgtgaggatgtttgttgtattgtttcctaca
atttaatatgagatgtactttcagaaaacatattccaaagctataaataa
atggtgtgtgtgtgtgtgtgtgtgtg
gaattcacagtgcccttcctgtgggcttgggatcgagagggaatcatact
cttattcctccatcaggttgtctaagtcacacagagcggtttgcctcact
tctgccagcagcctctttttttggagcctttctggatgtctatgctttat
gagggccggtttaggaagaaggcttcggggaggctatgggaagcatgcct
aatttaccagtggccaagagtgtttgattgttaaggaagtttcttgtgga
gtgggtgggagtatgaagacttcaagggaaatcaaggaacatgaacacct
ctttaggatattgacttgaatacggtggggacacatgccacaaagagtat
gatcaagaggcagggtcaaatttatgtgacatttgaggagtcttggctaa
agagttggggtgactcccccatctctctgggggaagagtctggtaggaca
gggttccaaagtaaggcttgtaccaaagagttgctgcaggccagtttatt
ccgaagctcctggattaggtcatcctgtttcagaaaccttttgccagact
tcagacagtcgctttagggtctcctgatgctcttgaatcacgcacggaga
agtgtagattcgaaccttcgggtggtctcctttgttctcagggtcctggg
acatttaaaaagaatgaattggctttgtttgaaatttccaaagtcaacct
cagagtcctactcgatgtttgcaggttatttgatcacactgtgaacccaa
agattgtgctttttactgaataaaacaaaacaaacaaaaacctgtttcta
gtgtggctctgccttacccacaccttttaatccctctgtttggtatggca
gacaggctccttagggcaaacctttatccccaaacaatgaggtatagttt
agtagaaggaagccacccgtgttttgaaagtgatggtctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111872473_111873004
seq2: B6Ng01-152E16.b_47_578

seq1  GAATTCATGCCAGTGGATTTAAAAACATTTCTACTGTACTTTTTTCGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCAGTGGATTTAAAAACATTTCTACTGTACTTTTTTCGCAG  50

seq1  AAACATATAAACTAAGACAACAATTCAGAGATAGGATGTAGGCCCGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATAAACTAAGACAACAATTCAGAGATAGGATGTAGGCCCGTGGT  100

seq1  AGAGCACTTGTCTAGAGTATATAAGCCCAGCGACCAAATTCCTAATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTGTCTAGAGTATATAAGCCCAGCGACCAAATTCCTAATCACA  150

seq1  AAGGACTCCACAGCAGGCCATGTCTGCAGTTACTGGAATGGCGCTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTCCACAGCAGGCCATGTCTGCAGTTACTGGAATGGCGCTGTTTA  200

seq1  AGTCTTTCTGTCTGTCGCCTTGATGGTGTTTTCAGAATGCGGGCAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTGTCTGTCGCCTTGATGGTGTTTTCAGAATGCGGGCAGAGCA  250

seq1  GTATATCAAATGTTGCTGAACACACTGATGCCACACCCTCTGACATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCAAATGTTGCTGAACACACTGATGCCACACCCTCTGACATAAAC  300

seq1  TTGATTGGAGCTCAGCGTAGTTTATGTATTTTATTTCCTTCTGCCTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGAGCTCAGCGTAGTTTATGTATTTTATTTCCTTCTGCCTGACC  350

seq1  TCTTTGTCTCTCTCCGCTGAGCCAGAACGAGGTTGGAGAGAAGATGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTCTCTCCGCTGAGCCAGAACGAGGTTGGAGAGAAGATGGATA  400

seq1  TAACCTGTGGTGTGCCTCAGACTAGTGTGAGGATGTTTGTTGTATTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTGGTGTGCCTCAGACTAGTGTGAGGATGTTTGTTGTATTGTTT  450

seq1  CCTACAATTTAATATGAGATGTACTTTCAGAAAACATATTCCAAAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAATTTAATATGAGATGTACTTTCAGAAAACATATTCCAAAGCTAT  500

seq1  AAATAAATGGTGTGTGTGTGTGTGTGTGTGTG  532
      ||||||||||||||||||||||||||||||||
seq2  AAATAAATGGTGTGTGTGTGTGTGTGTGTGTG  532

seq1: chr8_112043786_112044719
seq2: B6Ng01-152E16.g_69_1009 (reverse)

seq1  TTAGA-CATCACTTTC-AAGCACGGGT-GCTTCCTTCTAC-AAACTATAC  46
      ||||| |||||||||| || ||||||| |||||||||||| |||||||||
seq2  TTAGACCATCACTTTCAAAACACGGGTGGCTTCCTTCTACTAAACTATAC  50

seq1  CTTCATTGTTTGGGATTAAAGGTTTGCCCTAA-GAGCCTGTCTG-CATTC  94
      | ||||||||||||  |||||||||||||||| ||||||||||| ||| |
seq2  C-TCATTGTTTGGGGATAAAGGTTTGCCCTAAGGAGCCTGTCTGCCATAC  99

seq1  CAAACAGAGGGATT-AAAGGTGTGTGCTAAGGCAGAGCCACACTAGAAAC  143
      |||||||||||||| ||||||||| | |||||||||||||||||||||||
seq2  CAAACAGAGGGATTAAAAGGTGTG-GGTAAGGCAGAGCCACACTAGAAAC  148

seq1  AGGTTTTTGTTTTGTTTTGTTTT-TTCAGTAAATAGCACAATCTTTGGGT  192
      ||||||||| ||||||||||||| ||||||||| ||||||||||||||||
seq2  AGGTTTTTG-TTTGTTTTGTTTTATTCAGTAAAAAGCACAATCTTTGGGT  197

seq1  TCACAGTGTGATCAAATAACCTGCAAACATCGAGTAGGACTCTGAGGTTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGTGATCAAATAACCTGCAAACATCGAGTAGGACTCTGAGGTTG  247

seq1  AC-TTGGAAATTTCAAACAAAGCCAATTCATTCTTTTTAAATGTCCCAGG  291
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAAATTTCAAACAAAGCCAATTCATTCTTTTTAAATGTCCCAGG  297

seq1  ACCCTGAGAACAAAGGAGACCACCCGAAGGTTCGAATCTACACTTCTCCG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGAACAAAGGAGACCACCCGAAGGTTCGAATCTACACTTCTCCG  347

seq1  TGCGTGATTCAAGAGCATCAGGAGACCCTAAAGCGACTGTCTGAAGTCTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGATTCAAGAGCATCAGGAGACCCTAAAGCGACTGTCTGAAGTCTG  397

seq1  GCAAAAGGTTTCTG-AACAGGATGACCTAATCCAGGAGCTTCGGAATAAA  440
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGTTTCTGAAACAGGATGACCTAATCCAGGAGCTTCGGAATAAA  447

seq1  CTGGCCTGCAGCAACTCTTTGGTACAAGCCTTACTTTGGAACCCTGTCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGCAGCAACTCTTTGGTACAAGCCTTACTTTGGAACCCTGTCCT  497

seq1  ACCAGACTCTTCCCCCAGAGAGATGGGGGAGTCACCCCAACTCTTTAGCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTCTTCCCCCAGAGAGATGGGGGAGTCACCCCAACTCTTTAGCC  547

seq1  AAGACTCCTCAAATGTCACATAAATTTGACCCTGCCTCTTGATCATACTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTCAAATGTCACATAAATTTGACCCTGCCTCTTGATCATACTC  597

seq1  TTTGTGGCATGTGTCCCCACCGTATTCAAGTCAATATCCTAAAGAGGTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCATGTGTCCCCACCGTATTCAAGTCAATATCCTAAAGAGGTGT  647

seq1  TCATGTTCCTTGATTTCCCTTGAAGTCTTCATACTCCCACCCACTCCACA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCCTTGATTTCCCTTGAAGTCTTCATACTCCCACCCACTCCACA  697

seq1  AGAAACTTCCTTAACAATCAAACACTCTTGGCCACTGGTAAATTAGGCAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCCTTAACAATCAAACACTCTTGGCCACTGGTAAATTAGGCAT  747

seq1  GCTTCCCATAGCCTCCCCGAAGCCTTCTTCCTAAACCGGCCCTCATAAAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCATAGCCTCCCCGAAGCCTTCTTCCTAAACCGGCCCTCATAAAG  797

seq1  CATAGACATCCAGAAAGGCTCCAAAAAAAGAGGCTGCTGGCAGAAGTGAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATCCAGAAAGGCTCCAAAAAAAGAGGCTGCTGGCAGAAGTGAG  847

seq1  GCAAACCGCTCTGTGTGACTTAGACAACCTGATGGAGGAATAAGAGTATG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCGCTCTGTGTGACTTAGACAACCTGATGGAGGAATAAGAGTATG  897

seq1  ATTCCCTCTCGATCCCAAGCCCACAGGAAGGGCACTGTGAATTC  934
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCTCGATCCCAAGCCCACAGGAAGGGCACTGTGAATTC  941