BAC Information

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BAC

Clone NameB6Ng01-153D05
Chromosome8 (Build37)
Map Location 11,339,402 - 11,489,312
singlet/doubletdoublet
Overlap geneCol4a2, Rab20
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1
Downstream gene0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153D05.bB6Ng01-153D05.g
ACCDH948580DH948581
length1,049728
definitionDH948580|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D05, 5' end.DH948581|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,488,267 - 11,489,312)(11,339,402 - 11,340,128)
sequence
gaattctgcttcaggtacaatgaagtgttttaggacctctggccactcag
gggtttctgagacaacacagacattgtatttagaacaagttggttttctt
tgcaaaagtaaatagcctgtgtgagggcaggctcaaagtcactgtgccac
ttaccaaatgtcggagaagttcttagtttagacaaaccatgagaacggta
attgagaagtagatgtgtgtggccgcaggtcgtcctgaagaaagctgagg
agagatgacactccaaacagagagagaacagtttgtcttaagagaggcgg
ggacgggagcaggctttaaatcacgtggttacactccccactgctgctgc
ctcatcacaggtcaccctgcactagaactcagacaggctgtttctgtcct
ttcccatcagtcctgatgctctctatcctggaggaagaggatgaaattgc
ttcctccatcacacctgctgagctgtcagaacactgtagcagggctgaaa
caatgtttctcctgactggaaggaaaagcaactgtcacagtagctctgtg
tcccttggaggtatgtttgtgtcccttccctggtgccgtgattgtaacaa
ggccaactcttgggaggccgccctgttctgtgggacagtagtaaggatta
taactaactttgtcctacttctttttttttttttaagatttatttattat
tatatctaagtacactgttgctgtcttcagacactccagaagaggggcat
cagatctcattacggatggttgtgagccacccatgtgggttgctgggatt
ttgaactcaggacctttggaagagcagtcgatgctcttaaaccgctgagc
catctcaccagccccctttgtccttttctgaccttagtgaaattgtttta
aattagaatgagcaggtcttggaagctggtgcctgtaacttaccacttag
atactcttatcttcaaaactacaagaaaaaataaatttaaaactaaccag
gaaactgtgacggtttatttatttattttttaaataggtattttcttct
gaattcagggaggtactggagcctacaaatgctgtcttctagccaagcat
aggctatccgtagctattcagacacattccagagattgaacaaggaccag
gatgtgttggtgtataccagtgatgtgttgggtttctgatgagatgtttc
tgtagagcactagtactgtatatactgattctctttgtcttggcctatgg
tgacacttgggtcctgggagggataggagaggctgactgtaagacgttcc
cttgacttcagagtttgcaaacctctggtccagcagcgaccaaatgtcac
tggcaatccaggctatagatacaactcagtgtggctgcatctaaattagc
aaccatctgcaggctagctactgttttcaaggttacctcattctgaagat
gtaaagagaacaaggagaggccagggagtcttgaggccagtaggactata
aagagccagggttacacactgggactcctctagagaaaggaggagtggta
tggcccttggttcaacctaacatccttctacaacaaagtgctctggttct
ttgtgtggcgccatcctaagggctcctgaccagcaccaccccaggaacca
gtctagtccttcaggacaattctgccagaaggtagagcccttctgagagt
ctcaagattctttgtcacaactagttgggagagaaacaagagaagttgaa
ggtcttgtgcggaggtgggtgtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11488267_11489312
seq2: B6Ng01-153D05.b_47_1094 (reverse)

seq1  GAAGAAAATACCTAATTAAAAAATAAATAAATAAACCCTCA-TGTTTCCT  49
      |||||||||||||| |||||||||||||||||||||| |||  |||||||
seq2  GAAGAAAATACCTATTTAAAAAATAAATAAATAAACCGTCACAGTTTCCT  50

seq1  GTTTAGTTTTAAACTTTTATTTTATCTTGTAGTTTTG-AGAT-AGGGTCT  97
      | |||||||||||  |||||||| ||||||||||||| |||| || || |
seq2  GGTTAGTTTTAAA--TTTATTTTTTCTTGTAGTTTTGAAGATAAGAGTAT  98

seq1  CCTAAGTGTTAGGTTACAGGCACCTGCTTCCATGACCTGCTCATTCTAAT  147
       ||||||| || |||||||||||| ||||||| |||||||||||||||||
seq2  -CTAAGTGGTAAGTTACAGGCACCAGCTTCCAAGACCTGCTCATTCTAAT  147

seq1  TTTAAAACCATTTTCACTAAGGTCAGAAATAGGACAAAGGGGGCTGGTGA  197
      ||  ||| || |||||||||||||||||| ||||||||||||||||||||
seq2  TT--AAAACAATTTCACTAAGGTCAGAAA-AGGACAAAGGGGGCTGGTGA  194

seq1  GATGGCTCAGCGG-TTAAGAGCATCGACTGCTCTTCCAAAGGTCCTGAGT  246
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGCGGTTTAAGAGCATCGACTGCTCTTCCAAAGGTCCTGAGT  244

seq1  TC-AAATCCCAGCAA-CCACAT-GGTGGCTCACAACCATCCGTAATGAGA  293
      || |||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TCAAAATCCCAGCAACCCACATGGGTGGCTCACAACCATCCGTAATGAGA  294

seq1  TCTGATG-CCCTCTTCTGGAGTGTCTGAAGACAGCAACAGTGTACTTAGA  342
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCCTCTTCTGGAGTGTCTGAAGACAGCAACAGTGTACTTAGA  344

seq1  TATAATAATAAATAAATCTTAAAAAAAAAAAAAGAAGTAGGACAAAGTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATAAATAAATCTTAAAAAAAAAAAAAGAAGTAGGACAAAGTTA  394

seq1  GTTATAATCCTTACTACTGTCCCACAGAACAGGGCGGCCTCCCAAGAGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATCCTTACTACTGTCCCACAGAACAGGGCGGCCTCCCAAGAGTT  444

seq1  GGCCTTGTTACAATCACGGCACCAGGGAAGGGACACAAACATACCTCCAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTTACAATCACGGCACCAGGGAAGGGACACAAACATACCTCCAA  494

seq1  GGGACACAGAGCTACTGTGACAGTTGCTTTTCCTTCCAGTCAGGAGAAAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAGAGCTACTGTGACAGTTGCTTTTCCTTCCAGTCAGGAGAAAC  544

seq1  ATTGTTTCAGCCCTGCTACAGTGTTCTGACAGCTCAGCAGGTGTGATGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCAGCCCTGCTACAGTGTTCTGACAGCTCAGCAGGTGTGATGGA  594

seq1  GGAAGCAATTTCATCCTCTTCCTCCAGGATAGAGAGCATCAGGACTGATG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAATTTCATCCTCTTCCTCCAGGATAGAGAGCATCAGGACTGATG  644

seq1  GGAAAGGACAGAAACAGCCTGTCTGAGTTCTAGTGCAGGGTGACCTGTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGACAGAAACAGCCTGTCTGAGTTCTAGTGCAGGGTGACCTGTGA  694

seq1  TGAGGCAGCAGCAGTGGGGAGTGTAACCACGTGATTTAAAGCCTGCTCCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGCAGCAGTGGGGAGTGTAACCACGTGATTTAAAGCCTGCTCCC  744

seq1  GTCCCCGCCTCTCTTAAGACAAACTGTTCTCTCTCTGTTTGGAGTGTCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGCCTCTCTTAAGACAAACTGTTCTCTCTCTGTTTGGAGTGTCAT  794

seq1  CTCTCCTCAGCTTTCTTCAGGACGACCTGCGGCCACACACATCTACTTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCAGCTTTCTTCAGGACGACCTGCGGCCACACACATCTACTTCT  844

seq1  CAATTACCGTTCTCATGGTTTGTCTAAACTAAGAACTTCTCCGACATTTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCGTTCTCATGGTTTGTCTAAACTAAGAACTTCTCCGACATTTG  894

seq1  GTAAGTGGCACAGTGACTTTGAGCCTGCCCTCACACAGGCTATTTACTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGGCACAGTGACTTTGAGCCTGCCCTCACACAGGCTATTTACTTT  944

seq1  TGCAAAGAAAACCAACTTGTTCTAAATACAATGTCTGTGTTGTCTCAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAAAACCAACTTGTTCTAAATACAATGTCTGTGTTGTCTCAGAA  994

seq1  ACCCCTGAGTGGCCAGAGGTCCTAAAACACTTCATTGTACCTGAAGCAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAGTGGCCAGAGGTCCTAAAACACTTCATTGTACCTGAAGCAGA  1044

seq1  ATTC  1046
      ||||
seq2  ATTC  1048

seq1: chr8_11339402_11340128
seq2: B6Ng01-153D05.g_68_794

seq1  GAATTCAGGGAGGTACTGGAGCCTACAAATGCTGTCTTCTAGCCAAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGGTACTGGAGCCTACAAATGCTGTCTTCTAGCCAAGCAT  50

seq1  AGGCTATCCGTAGCTATTCAGACACATTCCAGAGATTGAACAAGGACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATCCGTAGCTATTCAGACACATTCCAGAGATTGAACAAGGACCAG  100

seq1  GATGTGTTGGTGTATACCAGTGATGTGTTGGGTTTCTGATGAGATGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTGGTGTATACCAGTGATGTGTTGGGTTTCTGATGAGATGTTTC  150

seq1  TGTAGAGCACTAGTACTGTATATACTGATTCTCTTTGTCTTGGCCTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCACTAGTACTGTATATACTGATTCTCTTTGTCTTGGCCTATGG  200

seq1  TGACACTTGGGTCCTGGGAGGGATAGGAGAGGCTGACTGTAAGACGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTGGGTCCTGGGAGGGATAGGAGAGGCTGACTGTAAGACGTTCC  250

seq1  CTTGACTTCAGAGTTTGCAAACCTCTGGTCCAGCAGCGACCAAATGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTCAGAGTTTGCAAACCTCTGGTCCAGCAGCGACCAAATGTCAC  300

seq1  TGGCAATCCAGGCTATAGATACAACTCAGTGTGGCTGCATCTAAATTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCCAGGCTATAGATACAACTCAGTGTGGCTGCATCTAAATTAGC  350

seq1  AACCATCTGCAGGCTAGCTACTGTTTTCAAGGTTACCTCATTCTGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTGCAGGCTAGCTACTGTTTTCAAGGTTACCTCATTCTGAAGAT  400

seq1  GTAAAGAGAACAAGGAGAGGCCAGGGAGTCTTGAGGCCAGTAGGACTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGAACAAGGAGAGGCCAGGGAGTCTTGAGGCCAGTAGGACTATA  450

seq1  AAGAGCCAGGGTTACACACTGGGACTCCTCTAGAGAAAGGAGGAGTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGGGTTACACACTGGGACTCCTCTAGAGAAAGGAGGAGTGGTA  500

seq1  TGGCCCTTGGTTCAACCTAACATCCTTCTACAACAAAGTGCTCTGGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTGGTTCAACCTAACATCCTTCTACAACAAAGTGCTCTGGTTCT  550

seq1  TTGTGTGGCGCCATCCTAAGGGCTCCTGACCAGCACCACCCCAGGAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGCGCCATCCTAAGGGCTCCTGACCAGCACCACCCCAGGAACCA  600

seq1  GTCTAGTCCTTCAGGACAATTCTGCCAGAAGGTAGAGCCCTTCTGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTCCTTCAGGACAATTCTGCCAGAAGGTAGAGCCCTTCTGAGAGT  650

seq1  CTCAAGATTCTTTGTCACAACTAGTTGGGAGAGAAACAAGAGAAGTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATTCTTTGTCACAACTAGTTGGGAGAGAAACAAGAGAAGTTGAA  700

seq1  GGTCTTGTGCGGAGGTGGGTGTGGGGG  727
      |||||||||||||||||||||||||||
seq2  GGTCTTGTGCGGAGGTGGGTGTGGGGG  727