BAC Information

Click to search

BAC

Clone NameB6Ng01-156N19
Chromosome8 (Build37)
Map Location 108,047,711 - 108,184,962
singlet/doubletdoublet
Overlap geneHsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101
Upstream geneAppbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837
Downstream geneD130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N19.bB6Ng01-156N19.g
ACCDH951256DH951257
length8391,102
definitionDH951256|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N19, 5' end.DH951257|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,047,711 - 108,048,544)(108,183,847 - 108,184,962)
sequence
gaattcttttgggacccacagtctcagtgctgcaagtccagagtaaatcc
caactgcctcttgactggctcaagatttaggtcctcaattactggccccc
agccacatggaagctgtatgttgtacctgcctggttgttggcattttaaa
ataaagatacattttatttctactagaatgggagagatagtgtttggagg
aggtgactgcctggttgcctgggtgacagggtatggcgatatgacagaga
ttgggtatttcttgggagatcttgggactcatcaggggagctgaggatgt
tccccagacactccgtggtacgtatctgctgacctcaggcaaatcttgtc
cctaggtctgagtttcttcatactgagatgaaggtaatggctaatttcag
ggagttacagggcttagtgaagcagttagggaagtgtgggacttctagag
ccaagatataattattctctaacaacccccaccccagcctatcttcctac
ctgagctcccagcagaaagagccatcctccagggacttccctggccctgt
ggctgctgactgcaggagagactcatcaaggtatagtaatgaacaaagtt
gagagccgaggaaaggtataaggacacaaaggagggagcagacagacagc
agggtttttaaagagggcaattttattgtctcagaggggcagagcggagg
gagaaggctacaaagctgctttcccaataccccaagaatacatattttct
actcttcccacaggttctgggggatgatctatgggacactgtcctcaggg
gtcccttaggctaaggagggacattgaaagtcatacaag
gaattctctgtgtgggcactgtgtcttagccagcattctgggaaggcatt
atgaaatctacagagaaagagccatggtctgattcaggatgaaaagggtt
caaggtaaaataaggtaggcttggagaaaagtagcatgaccatgtcaaaa
gttcttgtataaattacaattggaatgttatgaaaccctacctcaaaaca
agaaaagaagtctgagaatacagttcactgtcaaagcacctgtctaaaaa
ggtcccgcagagctcagcagccaagatgtgacttcactgaggaccagact
gcagaattcaaggaggctttccagctgtttgaccgaacaggcgatggcaa
gatcctgtacagccagcgtggggatgtgatgcgggccctgggccagaacc
ctaccaacgccgaggtgctcaaggtcctggggaaccccaagagtgatgag
atgaatgtgaaggtgctggactttgagcacttcctgcccatgctacagac
cgtggccaagaacaaggaccagggaacctacgaggattatgttgaaggcc
ttcgtgtgtttgacaaggaaggaaatggcaccgtcatgggtgctgaaatc
cgtcatgtcctagtcacactgggtgagaagatgacagaggaagaagtaga
gatgctagtggcggggcatgaggacagcaatggttgcatcaactatgaag
agcttgtctggacggtgctgaacggctgaggacattctgtatcccgagcc
tgttccttgcccagtgtgatttctgtgtggccccagaggctcccctgtca
cagcaccttgcccatctggtttcttttggatgatgtttgccttcacaaat
aaaatttgctctctttgcaaaaaaaaaaaaaaaaaaaaaaccaaacatct
gtctagtactaatggggcctaaattcatcccagtactgtctttcttctca
cccaaattgaaagatgtatttgggtcacacttttaaccctaggcttgaga
aggcagctgttatctcttgtaaatttgaagcaggcctgtctacataagtg
agtccagagagccagaaaattagtggaccctggtctaatcaaacattatg
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108047711_108048544
seq2: B6Ng01-156N19.b_47_885

seq1  GAATTCTTTTGGGACCCACAGTCTCAGTGCTGCAAGTCCAGAGTAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGGACCCACAGTCTCAGTGCTGCAAGTCCAGAGTAAATCC  50

seq1  CAACTGCCTCTTGACTGGCTCAAGATTTAGGTCCTCAATTACTGGCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTCTTGACTGGCTCAAGATTTAGGTCCTCAATTACTGGCCCCC  100

seq1  AGCCACATGGAAGCTGTATGTTGTACCTGCCTGGTTGTTGGCATTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATGGAAGCTGTATGTTGTACCTGCCTGGTTGTTGGCATTTTAAA  150

seq1  ATAAAGATACATTTTATTTCTACTAGAATGGGAGAGATAGTGTTTGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATACATTTTATTTCTACTAGAATGGGAGAGATAGTGTTTGGAGG  200

seq1  AGGTGACTGCCTGGTTGCCTGGGTGACAGGGTATGGCGATATGACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTGCCTGGTTGCCTGGGTGACAGGGTATGGCGATATGACAGAGA  250

seq1  TTGGGTATTTCTTGGGAGATCTTGGGACTCATCAGGGGAGCTGAGGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATTTCTTGGGAGATCTTGGGACTCATCAGGGGAGCTGAGGATGT  300

seq1  TCCCCAGACACTCCGTGGTACGTATCTGCTGACCTCAGGCAAATCTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGACACTCCGTGGTACGTATCTGCTGACCTCAGGCAAATCTTGTC  350

seq1  CCTAGGTCTGAGTTTCTTCATACTGAGATGAAGGTAATGGCTAATTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCTGAGTTTCTTCATACTGAGATGAAGGTAATGGCTAATTTCAG  400

seq1  GGAGTTACAGGGCTTAGTGAAGCAGTTAGGGAAGTGTGGGACTTCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACAGGGCTTAGTGAAGCAGTTAGGGAAGTGTGGGACTTCTAGAG  450

seq1  CCAAGATATAATTATTCTCTAACAACCCCCACCCCAGCCTATCTTCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATATAATTATTCTCTAACAACCCCCACCCCAGCCTATCTTCCTAC  500

seq1  CTGAGCTCCCAGCAGAAAGAGCCATCCTCCAGGGACTTCCCTGGCCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCCCAGCAGAAAGAGCCATCCTCCAGGGACTTCCCTGGCCCTGT  550

seq1  GGCTGCTGACTGCAGGAGAGACTCATCAAGGTATAGTAATGAACAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGACTGCAGGAGAGACTCATCAAGGTATAGTAATGAACAAAGTT  600

seq1  GAGAGCCGAGGAAAGGTATAAGGACACAAAGGAGGGAGCAGACAGACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCGAGGAAAGGTATAAGGACACAAAGGAGGGAGCAGACAGACAGC  650

seq1  AGGGTTTTTAAAGAGGGCAATTTTATTGTCTCAGAGGGGCAGAGCGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTAAAGAGGGCAATTTTATTGTCTCAGAGGGGCAGAGCGGAGG  700

seq1  GAGAAGGCTACAAAGCTGCTTTCCCAATACCCCAAGAATACATATTCTCT  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGAAGGCTACAAAGCTGCTTTCCCAATACCCCAAGAATACATATTTTCT  750

seq1  ACTCTTCCCACAGGTTCT-GGGGATGACCTAT-GGACACTGTCC-CAGGG  797
      |||||||||||||||||| |||||||| |||| ||||||||||| |||||
seq2  ACTCTTCCCACAGGTTCTGGGGGATGATCTATGGGACACTGTCCTCAGGG  800

seq1  GT-CCTTAGGCTAAGGAGGGACA-TGAAAGTCATACAAG  834
      || |||||||||||||||||||| |||||||||||||||
seq2  GTCCCTTAGGCTAAGGAGGGACATTGAAAGTCATACAAG  839

seq1: chr8_108183847_108184962
seq2: B6Ng01-156N19.g_70_1171 (reverse)

seq1  GACATAATGTTTTGTTTTAAGA-CAGGGTCTCACTATATATCCTTGGCTC  49
      ||||||||||||  ||   ||| ||||||| |||||  | ||  ||||||
seq2  GACATAATGTTTGATT---AGACCAGGGTC-CACTAATTTTC--TGGCTC  44

seq1  TCCTGGAACTCAC-TATGTAGACCAGCCTGGCCTCAAATTTAC-AGAGAT  97
      | |||| |||||| |||||||||  |||| || |||||||||| ||||||
seq2  T-CTGG-ACTCACTTATGTAGACAGGCCT-GCTTCAAATTTACAAGAGAT  91

seq1  -ACAGCTGCC-TCTCAAGCCTAGGGTTAAAAGTTGTGAACCAAATACATC  145
       ||||||||| ||||||||||||||||||||| ||||| |||||||||||
seq2  AACAGCTGCCTTCTCAAGCCTAGGGTTAAAAG-TGTGACCCAAATACATC  140

seq1  TTTCAATTTGGGTGAGAAGGAAGGACAGTACTGGGATTGAATTTAGGGCC  195
      |||||||||||||||||| ||| ||||||||||||| |||||||| ||||
seq2  TTTCAATTTGGGTGAGAA-GAAAGACAGTACTGGGA-TGAATTTA-GGCC  187

seq1  TCATTAGTACTAGACAGGTGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTT  245
       |||||||||||||||| |||||||     ||||||||||||||||||||
seq2  CCATTAGTACTAGACAGATGTTTGG-----TTTTTTTTTTTTTTTTTTTT  232

seq1  TTGCAAAGAGAGCAAATTTTATTTGGTGAAGGCAAACATCATCCAAAAGA  295
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGCAAAGAGAGCAAATTTTATTT-GTGAAGGCAAACATCATCCAAAAGA  281

seq1  AACCAGATGGGCAAGGTGCTGTGACAGGGGAGCCTCTGGGGCCACACAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATGGGCAAGGTGCTGTGACAGGGGAGCCTCTGGGGCCACACAGA  331

seq1  AATCACACTGGGCAAGGAACAGGCTCGGGATACAGAATGTCCTCAGCCGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACTGGGCAAGGAACAGGCTCGGGATACAGAATGTCCTCAGCCGT  381

seq1  TCAGCACCGTCCAGACAAGCTCTTCATAGTTGATGCAACCATTGCTGTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCGTCCAGACAAGCTCTTCATAGTTGATGCAACCATTGCTGTCC  431

seq1  TCATGCCCCGCCACTAGCATCTCTACTTCTTCCTCTGTCATCTTCTCACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCCGCCACTAGCATCTCTACTTCTTCCTCTGTCATCTTCTCACC  481

seq1  CAGTGTGACTAGGACATGACGGATTTCAGCACCCATGACGGTGCCATTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGACTAGGACATGACGGATTTCAGCACCCATGACGGTGCCATTTC  531

seq1  CTTCCTTGTCAAACACACGAAGGCCTTCAACATAATCCTCGTAGGTTCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGTCAAACACACGAAGGCCTTCAACATAATCCTCGTAGGTTCCC  581

seq1  TGGTCCTTGTTCTTGGCCACGGTCTGTAGCATGGGCAGGAAGTGCTCAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTGTTCTTGGCCACGGTCTGTAGCATGGGCAGGAAGTGCTCAAA  631

seq1  GTCCAGCACCTTCACATTCATCTCATCACTCTTGGGGTTCCCCAGGACCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCACCTTCACATTCATCTCATCACTCTTGGGGTTCCCCAGGACCT  681

seq1  TGAGCACCTCGGCGTTGGTAGGGTTCTGGCCCAGGGCCCGCATCACATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCTCGGCGTTGGTAGGGTTCTGGCCCAGGGCCCGCATCACATCC  731

seq1  CCACGCTGGCTGTACAGGATCTTGCCATCGCCTGTTCGGTCAAACAGCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTGGCTGTACAGGATCTTGCCATCGCCTGTTCGGTCAAACAGCTG  781

seq1  GAAAGCCTCCTTGAATTCTGCAGTCTGGTCCTCAGTGAAGTCACATCTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTCCTTGAATTCTGCAGTCTGGTCCTCAGTGAAGTCACATCTTG  831

seq1  GCTGCTGAGCTCTGCGGGACCTTTTTAGACAGGTGCTTTGACAGTGAACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGCTCTGCGGGACCTTTTTAGACAGGTGCTTTGACAGTGAACT  881

seq1  GTATTCTCAGACTTCTTTTCTTGTTTTGAGGTAGGGTTTCATAACATTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCAGACTTCTTTTCTTGTTTTGAGGTAGGGTTTCATAACATTCC  931

seq1  AATTGTAATTTATACAAGAACTTTTGACATGGTCATGCTACTTTTCTCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATTTATACAAGAACTTTTGACATGGTCATGCTACTTTTCTCCA  981

seq1  AGCCTACCTTATTTTACCTTGAACCCTTTTCATCCTGAATCAGACCATGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCTTATTTTACCTTGAACCCTTTTCATCCTGAATCAGACCATGG  1031

seq1  CTCTTTCTCTGTAGATTTCATAATGCCTTCCCAGAATGCTGGCTAAGACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTGTAGATTTCATAATGCCTTCCCAGAATGCTGGCTAAGACA  1081

seq1  CAGTGCCCACACAGAGAATTC  1116
      |||||||||||||||||||||
seq2  CAGTGCCCACACAGAGAATTC  1102