BAC Information

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BAC

Clone NameB6Ng01-157M07
Chromosome8 (Build37)
Map Location 106,639,256 - 106,751,668
singlet/doubletdoublet
Overlap geneCdh5, Bean, Tk2
Upstream gene1600027J07Rik, LOC100041397, LOC667656
Downstream geneCklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157M07.bB6Ng01-157M07.g
ACCDH951913DH951914
length1,108922
definitionDH951913|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M07, 5' end.DH951914|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,639,256 - 106,639,938)(106,750,744 - 106,751,668)
sequence
gaattcagtcaaagaaatcacgggggggacaggttgcttaagccctttgg
atctcacatcattctgccttgtgcccaagactgctagacatggaactatg
agatttgatgttttccatgctaggtttctattttacgtgagtccaactct
tcctttctgtcttagtttcctttctatttgctgtggtttttaaaaatcta
acaaaagcaacttgagggcgaaagtgtttactttgactcacagttcaagg
gtgagctccatcatcaagaggaagccaaggcagcagggggttaaagcagc
tgggtatattacatccaccatcaagaacaaagcaatgattgcctactcgg
cttgctttctcatctgcatacagtcctggacttctgcccagggaacgtcc
ctcttgaaataggcgagtactcccacctcagttaacagaaacaaggaaat
ccctcaaaggaatgtccaaagatatcctcacgtagataatccctcccagg
taaggtttgtctcatgagtgactcaagatccagtcaagctggtaatcaac
accaaccatcacaatttctcccctatgaaacgggagtgggtatcctgtat
cactctatcttgcagcacgaaacttttactccagctcggcttttattctt
aaaggctcagaacctttccttcagtctcagaagaaacttctgagcaatgc
caggactgtaggtagataccgcacagattcttacagatgtgactcatggg
gttctgagatgaccaggagcccttagtagtcagagccaggatattattat
catggcaatccgtgactgtcttgaactcatcttggggaatctgacacctt
ccggcctctgcaggaactgcacaaacgtgatgcacatgcatacatgtgtg
catgcatggaagcagaacaaccgcacacataaaacgaagtacacggaaat
ttactaaacatttttaaaacagtcatcactgagcagtggtggtcacacct
gtaatccagcactcggaggcagaggcagaagatctccggagtttagacca
gccttgggctacgagtggtttcagtacagtagacctcacagagaaactgt
ctcaaaaa
gaattccatcatctttcagtaccgggccagttcaaggagaccagacatca
ctaggtgttggcacacctctcttatttggcatgagcccagggtgtcctgg
tatgagggtactgtgacctctatccattcctttgtcacctggacctcggt
gtccactggggactcctggatcggcctctgcttggtgccagagtccttga
ggatgagtcctccccagactctaccagttccctgtcgttttgtgtcagaa
aaaagggggttatgggacctggacactttaccctttgctgagcgaggcca
agggcagccagctgagcttccaagaccccatcactctctcctgtccttgt
gtgaggagcagtgtccccttgctccagggagagtgacagtggccttaact
cctttgaagtgtttttccatctgagcagatgtcatggaccacgagcatga
agaagtcatctctattggatcagaaaataccttagctttgctgagccgta
actgtgcactgaaggtgcagctgttacttgaatcagtcatgaccaagaga
ggccggccattcctcaggaccgtgagactggaaagtcatggtttgccaac
aaagacaatttaagccttgctgctcttgacattctagaatggatggagtg
catctggaaaagactggacacagatgatacaggggaatgatgaccgtata
ccctggagaagcacagcacaggctggggagggggctgcaggggagccctg
ctcccctgtttagctgcctgggactagaaagagggccaagagttcagctc
ttggtccttttctgtttggaccatttctggccctatttggagtatgaaga
gtaccatccgggagaattgttccatcaacacctgcagtccatgatggata
aacctgagtatgcaggactttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106639256_106639938
seq2: B6Ng01-157M07.b_490_1154

seq1  AGGAAATCCCTCAAAGGAATGTCCAAAGATATCCTCACGTAGATAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCCCTCAAAGGAATGTCCAAAGATATCCTCACGTAGATAATCCC  50

seq1  TCCCAGGTAAGGTTTGTCTCATGAGTGACTCAAGATCCAGTCAAGCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTAAGGTTTGTCTCATGAGTGACTCAAGATCCAGTCAAGCTGGT  100

seq1  AATCAACACCAACCATCACAATTTCTCCCCTATGAAACGGGAGTGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACACCAACCATCACAATTTCTCCCCTATGAAACGGGAGTGGGTAT  150

seq1  CCTGTATCACTCTATCTTGCAGCACGAAACTTTTACTCCAGCTCGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCACTCTATCTTGCAGCACGAAACTTTTACTCCAGCTCGGCTTT  200

seq1  TATTCTTAAAGGCTCAGAACCTTTCCTTCAGTCTCAGAAGAAACTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAAAGGCTCAGAACCTTTCCTTCAGTCTCAGAAGAAACTTCTGA  250

seq1  GCAATGCCAGGACTGTAGGTAGATACCGCACAGATTCTTACAGATGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCCAGGACTGTAGGTAGATACCGCACAGATTCTTACAGATGTGAC  300

seq1  TCATGGGGTTCTGAGATGACCAGGAGCCCTTAGTAGTCAGAGCCAGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGTTCTGAGATGACCAGGAGCCCTTAGTAGTCAGAGCCAGGATA  350

seq1  TTATTATCATGGCAATCCGTGACTGTCTTGAACTCATCTTGGGGAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCATGGCAATCCGTGACTGTCTTGAACTCATCTTGGGGAATCTG  400

seq1  ACACCTTCCGGCCTCTGCAGGAACTGCACAAACGTGATGCACATGCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCCGGCCTCTGCAGGAACTGCACAAACGTGATGCACATGCATAC  450

seq1  ATGTGTGCATGCATGGAAGCAGAACAACCGCACACATAAAAACGAAGGTT  500
      ||||||||||||||||||||||||||||||||||||| |||||||||  |
seq2  ATGTGTGCATGCATGGAAGCAGAACAACCGCACACAT-AAAACGAAG--T  497

seq1  ACACGGAAATTTAACTAAACATTTTTTAAAAACAAGTCATCCACTGAGGC  550
      |||||||||||| |||||||||||||  ||||| |||||| |||||| ||
seq2  ACACGGAAATTT-ACTAAACATTTTT--AAAAC-AGTCAT-CACTGA-GC  541

seq1  AGTGGTGGTTCACACCTGTAATCCCAGCACTCGGGAGGCAGAGGCAGGAA  600
      |||||||| ||||||||||||| ||||||||| ||||||||||||| |||
seq2  AGTGGTGG-TCACACCTGTAAT-CCAGCACTC-GGAGGCAGAGGCA-GAA  587

seq1  GATCT-CGGAGTTATAGACCAG-CTTGGGCTACAGAGTGAGTTTCAGTAC  648
      ||||| ||||||| |||||||| |||||||||| ||||| ||||||||||
seq2  GATCTCCGGAGTT-TAGACCAGCCTTGGGCTAC-GAGTG-GTTTCAGTAC  634

seq1  AGTCAGGACTTCACAGAGAAACCTTGTCTCAAAAA  683
      |||   ||| ||||||||||||  |||||||||||
seq2  AGT--AGACCTCACAGAGAAAC--TGTCTCAAAAA  665

seq1: chr8_106750744_106751668
seq2: B6Ng01-157M07.g_69_990 (reverse)

seq1  CAAAGTTCCTGCCTTTCTCAGGTTTATCCATTGCTGGACTGCAGGTGCTG  50
      ||||| ||||| | | |||||||||||||| |  ||||||||||||| ||
seq2  CAAAG-TCCTG-CATACTCAGGTTTATCCA-TCATGGACTGCAGGTGTTG  47

seq1  ATGG-ACAA-TCTCCCTGGATGCTACTCTTCATACTACCAAAAGGGCCAA  98
      |||| |||| |||||| ||||| ||||||||||||| | || |||||| |
seq2  ATGGAACAATTCTCCC-GGATGGTACTCTTCATACTCCAAATAGGGCC-A  95

seq1  GAATTGGTCCAAACAG-AAAGGACCAAGAGCTGGACTCTTGGCCCTCTTT  147
      ||| |||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GAAATGGTCCAAACAGAAAAGGACCAAGAGCTGAACTCTTGGCCCTCTTT  145

seq1  CTAGCTCCCAGGCAGCTAAACAGGGGAGCAGGGCTCCCCTGCAGCCCCCT  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAG-TCCCAGGCAGCTAAACAGGGGAGCAGGGCTCCCCTGCAGCCCCCT  194

seq1  CCCCAGCCTGTGCTGTGCTTCTCCAGGGTATACGGTCATCATTCCCCTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCTGTGCTGTGCTTCTCCAGGGTATACGGTCATCATTCCCCTGT  244

seq1  ATCATCTGTGTCCAGTCTTTTCCAGATGCACTCCATCCATTCTAGAATGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGTGTCCAGTCTTTTCCAGATGCACTCCATCCATTCTAGAATGT  294

seq1  CAAGAGCAGCAAGGCTTAAATTGTCTTTGTTGGCAAACCATGACTTTCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAGCAAGGCTTAAATTGTCTTTGTTGGCAAACCATGACTTTCCA  344

seq1  GTCTCACGGTCCTGAGGAATGGCCGGCCTCTCTTGGTCATGACTGATTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACGGTCCTGAGGAATGGCCGGCCTCTCTTGGTCATGACTGATTCA  394

seq1  AGTAACAGCTGCACCTTCAGTGCACAGTTACGGCTCAGCAAAGCTAAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGCTGCACCTTCAGTGCACAGTTACGGCTCAGCAAAGCTAAGGT  444

seq1  ATTTTCTGATCCAATAGAGATGACTTCTTCATGCTCGTGGTCCATGACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGATCCAATAGAGATGACTTCTTCATGCTCGTGGTCCATGACAT  494

seq1  CTGCTCAGATGGAAAAACACTTCAAAGGAGTTAAGGCCACTGTCACTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGATGGAAAAACACTTCAAAGGAGTTAAGGCCACTGTCACTCTC  544

seq1  CCTGGAGCAAGGGGACACTGCTCCTCACACAAGGACAGGAGAGAGTGATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCAAGGGGACACTGCTCCTCACACAAGGACAGGAGAGAGTGATG  594

seq1  GGGTCTTGGAAGCTCAGCTGGCTGCCCTTGGCCTCGCTCAGCAAAGGGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGGAAGCTCAGCTGGCTGCCCTTGGCCTCGCTCAGCAAAGGGTA  644

seq1  AAGTGTCCAGGTCCCATAACCCCCTTTTTTCTGACACAAAACGACAGGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCAGGTCCCATAACCCCCTTTTTTCTGACACAAAACGACAGGGA  694

seq1  ACTGGTAGAGTCTGGGGAGGACTCATCCTCAAGGACTCTGGCACCAAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGAGTCTGGGGAGGACTCATCCTCAAGGACTCTGGCACCAAGCA  744

seq1  GAGGCCGATCCAGGAGTCCCCAGTGGACACCGAGGTCCAGGTGACAAAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGATCCAGGAGTCCCCAGTGGACACCGAGGTCCAGGTGACAAAGG  794

seq1  AATGGATAGAGGTCACAGTACCCTCATACCAGGACACCCTGGGCTCATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAGAGGTCACAGTACCCTCATACCAGGACACCCTGGGCTCATGC  844

seq1  CAAATAAGAGAGGTGTGCCAACACCTAGTGATGTCTGGTCTCCTTGAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGAGAGGTGTGCCAACACCTAGTGATGTCTGGTCTCCTTGAACT  894

seq1  GGCCCGGTACTGAAAGATGATGGAATTC  925
      ||||||||||||||||||||||||||||
seq2  GGCCCGGTACTGAAAGATGATGGAATTC  922