BAC Information

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BAC

Clone NameB6Ng01-158J22
Chromosome8 (Build37)
Map Location 6,266,386 - 6,405,985
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623409, LOC669429, LOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J22.bB6Ng01-158J22.g
ACCDH952519DH952520
length9591,079
definitionDH952519|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J22, 5' end.DH952520|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,266,386 - 6,267,046)(6,404,882 - 6,405,985)
sequence
gaattccacaactgtggaaaactagtagaatatctggtcctggctactca
aagtgcagcaaagagcacttgtgaattgagcacccttgagtatatttggc
agagctgtgaattagatgctgggcactggtgtgctagctttcaaagccca
gagatgtactagtaagaacttccatgaagatttctaaacaacaagacaga
aggtcactctctgaaaactttcaacagagttccattaccgaggacaactt
ttaaagtttattgaacatagagaattcagctgttataaacttggagcctt
tgcccctatgctctagacactgctatgagaaggtactatgcaggctttgg
aaagataaacttgcttcagatgtccagctacaaacctctcagtctacact
ttgtcttgcctgtaagacattctggggcagtggttgtataaaacttgtgg
aagtggccaaccaatgtttggtttaatttcagactcatgcctagggaagt
agcctatgaactacactgcctacattagatggctaggaaccagagactga
atagctcagggacctaggatagaacaaaaaaaaaaaaaaagtttgccggg
cgtggtggcacacacacctttaatcccagcacttgggatgcagaggcagg
cagctttctgagtttgaggccagcctggtctatagagtgagttccaggac
aaccagggctttacagagaaaccctgtctcaaaaaacaaaaaacaagcaa
ataaaaaaccaaaaacaaaaaatggcaacaagcaaataaacaatcacaca
aaacaaacaatgaaaagctgcaacactcatagaacagtaccgtgtacagt
tgttaccacagagacttcctacagcagcagatgaaagcaaatgcagatac
acacaaccaaactttatatagtgaaagagaataaaaaatggagatctcca
tcaggtctc

gaattcttgctgagactcttcatgcagaatttcccagagtatgttgtacc
tgaaattgtacttcgaattccctaacatattttgcaagaagacactctac
ttgagactagaatgaaattagtaaatttatggcatatttattttaaaaat
gtcttaatcaaagcatcatcataagttatacctgtagtaaaatttgcgag
ctctagtagatgctgcaaaaagaagagaaaaacagatataagaaatgcaa
tagttgacaataggaacaaaaccaaaatatagtcatttggtaagatatta
atatttaagaagaaatgacttgaagatattcagaattttcattgatattt
aggaaatagatgggaagatgacagcaactggaggaaactatgaccttaga
tgagaaagactctagagcaaagagaggtgatgaagaccagtgagtgcagc
atcctggcttgttcacagtactttcgccatggatgttgaatgcattccat
gccacatacactgaatgtggtatgggcattttcagcaaaagttgctgtat
gaaatctttaaactcatgaagctctttcatatgtcccctgttaataccca
cagtaaaccctaaaaattattattactgagcatttacattaggacataag
ataacgaagaagaatgattcctttttcgagttcagcgtgcattgagatga
ggttgaaccctaaatatttaacatgaaaacatttcagtctgctttacact
atgaaatattccaaacagaagcagatttggcttccatcaccaggatgtct
tatgcatgttaggagttgctaagcttggaggacctaaatgagctcatcac
ttgctgataaccgctaaggttaaagttaaaatgcattttcgtaagtgaga
ggtctatgaatgattgaaacgctcagagaaacattgctcaaaggagtctt
cacagcttactaaatgatgacttgcctggatttgaatatgtagcttatat
tgcttcatttataaaagaagaggaaaaaaaacagcattcaatctggtaga
aagggatcaactcggaactcattagaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_6266386_6267046
seq2: B6Ng01-158J22.b_47_707

seq1  GAATTCCACAACTGTGGAAAACTAGTAGAATATCTGGTCCTGGCTACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACTGTGGAAAACTAGTAGAATATCTGGTCCTGGCTACTCA  50

seq1  AAGTGCAGCAAAGAGCACTTGTGAATTGAGCACCCTTGAGTATATTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAGCAAAGAGCACTTGTGAATTGAGCACCCTTGAGTATATTTGGC  100

seq1  AGAGCTGTGAATTAGATGCTGGGCACTGGTGTGCTAGCTTTCAAAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTGAATTAGATGCTGGGCACTGGTGTGCTAGCTTTCAAAGCCCA  150

seq1  GAGATGTACTAGTAAGAACTTCCATGAAGATTTCTAAACAACAAGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTACTAGTAAGAACTTCCATGAAGATTTCTAAACAACAAGACAGA  200

seq1  AGGTCACTCTCTGAAAACTTTCAACAGAGTTCCATTACCGAGGACAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTCTCTGAAAACTTTCAACAGAGTTCCATTACCGAGGACAACTT  250

seq1  TTAAAGTTTATTGAACATAGAGAATTCAGCTGTTATAAACTTGGAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTATTGAACATAGAGAATTCAGCTGTTATAAACTTGGAGCCTT  300

seq1  TGCCCCTATGCTCTAGACACTGCTATGAGAAGGTACTATGCAGGCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTATGCTCTAGACACTGCTATGAGAAGGTACTATGCAGGCTTTGG  350

seq1  AAAGATAAACTTGCTTCAGATGTCCAGCTACAAACCTCTCAGTCTACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAACTTGCTTCAGATGTCCAGCTACAAACCTCTCAGTCTACACT  400

seq1  TTGTCTTGCCTGTAAGACATTCTGGGGCAGTGGTTGTATAAAACTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGCCTGTAAGACATTCTGGGGCAGTGGTTGTATAAAACTTGTGG  450

seq1  AAGTGGCCAACCAATGTTTGGTTTAATTTCAGACTCATGCCTAGGGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCCAACCAATGTTTGGTTTAATTTCAGACTCATGCCTAGGGAAGT  500

seq1  AGCCTATGAACTACACTGCCTACATTAGATGGCTAGGAACCAGAGACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATGAACTACACTGCCTACATTAGATGGCTAGGAACCAGAGACTGA  550

seq1  ATAGCTCAGGGACCTAGGATAGAACAAAAAAAAAAAAAAAGTTTGCCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAGGGACCTAGGATAGAACAAAAAAAAAAAAAAAGTTTGCCGGG  600

seq1  CGTGGTGGCACACACACCTTTAATCCCAGCACTTGGGATGCAGAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGCACACACACCTTTAATCCCAGCACTTGGGATGCAGAGGCAGG  650

seq1  CAGCTTTCTGA  661
      |||||||||||
seq2  CAGCTTTCTGA  661


seq1: chr8_6404882_6405985
seq2: B6Ng01-158J22.g_68_1146 (reverse)

seq1  AATTCTAAATTCTTAAAATTGGTGTCCGAGTTGATTCCCTTTCTACCAAG  50
             ||||||   |||  || |||||||||| |||||||||||| ||
seq2  -------AATTCT---AATGAGT-TCCGAGTTGA-TCCCTTTCTACC-AG  37

seq1  ATTTGAATGCTTGTTTTTTTTTTCTTTCTTCTTTTAATAAATGAAGCAAT  100
      | |||||||| ||||||||||     ||||||||| ||||||||||||||
seq2  A-TTGAATGC-TGTTTTTTTT---CCTCTTCTTTT-ATAAATGAAGCAAT  81

seq1  ATAAGCTTACCATATTCAAATTCCAGGCAAGTCATTCATTTAGTAAGCCT  150
      |||||||   |||||||||| ||||||||||||| |||||||||||| ||
seq2  ATAAGCT--ACATATTCAAA-TCCAGGCAAGTCA-TCATTTAGTAAG-CT  126

seq1  GTGGAGGCTCCCTTTGGGCAATGTTTCTCTGAGCGTTTCAATCATTCATA  200
      ||| || || |||||| |||||||||||||||||||||||||||||||||
seq2  GTGAAGACT-CCTTTGAGCAATGTTTCTCTGAGCGTTTCAATCATTCATA  175

seq1  GGCCTCTCACTTACGAAAATGCATTTTAACTTTAACCTTAGCGGTTATCA  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCACTTACGAAAATGCATTTTAACTTTAACCTTAGCGGTTATCA  225

seq1  GCAAGTGATGAGCTCATTTAGGTCCTCCAAGCTTAGCAACTCCTAACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGATGAGCTCATTTAGGTCCTCCAAGCTTAGCAACTCCTAACATG  275

seq1  CATAAGACATCCTGGTGATGGAAGCCAAATCTGCTTCTGTTTGGAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACATCCTGGTGATGGAAGCCAAATCTGCTTCTGTTTGGAATATT  325

seq1  TCATAGTGTAAAGCAGACTGAAATGTTTTCATGTTAAATATTTAGGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGTAAAGCAGACTGAAATGTTTTCATGTTAAATATTTAGGGTTC  375

seq1  AACCTCATCTCAATGCACGCTGAACTCGAAAAAGGAATCATTCTTCTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCATCTCAATGCACGCTGAACTCGAAAAAGGAATCATTCTTCTTCG  425

seq1  TTATCTTATGTCCTAATGTAAATGCTCAGTAATAATAATTTTTAGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATGTCCTAATGTAAATGCTCAGTAATAATAATTTTTAGGGTTT  475

seq1  ACTGTGGGTATTAACAGGGGACATATGAAAGAGCTTCATGAGTTTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGTATTAACAGGGGACATATGAAAGAGCTTCATGAGTTTAAAGA  525

seq1  TTTCATACAGCAACTTTTGCTGAAAATGCCCATACCACATTCAGTGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACAGCAACTTTTGCTGAAAATGCCCATACCACATTCAGTGTATG  575

seq1  TGGCATGGAATGCATTCAACATCCATGGCGAAAGTACTGTGAACAAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGAATGCATTCAACATCCATGGCGAAAGTACTGTGAACAAGCCA  625

seq1  GGATGCTGCACTCACTGGTCTTCATCACCTCTCTTTGCTCTAGAGTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGCACTCACTGGTCTTCATCACCTCTCTTTGCTCTAGAGTCTTT  675

seq1  CTCATCTAAGGTCATAGTTTCCTCCAGTTGCTGTCATCTTCCCATCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTAAGGTCATAGTTTCCTCCAGTTGCTGTCATCTTCCCATCTATT  725

seq1  TCCTAAATATCAATGAAAATTCTGAATATCTTCAAGTCATTTCTTCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATATCAATGAAAATTCTGAATATCTTCAAGTCATTTCTTCTTAA  775

seq1  ATATTAATATCTTACCAAATGACTATATTTTGGTTTTGTTCCTATTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATATCTTACCAAATGACTATATTTTGGTTTTGTTCCTATTGTCA  825

seq1  ACTATTGCATTTCTTATATCTGTTTTTCTCTTCTTTTTGCAGCATCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCATTTCTTATATCTGTTTTTCTCTTCTTTTTGCAGCATCTACT  875

seq1  AGAGCTCGCAAATTTTACTACAGGTATAACTTATGATGATGCTTTGATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCGCAAATTTTACTACAGGTATAACTTATGATGATGCTTTGATTA  925

seq1  AGACATTTTTAAAATAAATATGCCATAAATTTACTAATTTCATTCTAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTTAAAATAAATATGCCATAAATTTACTAATTTCATTCTAGTC  975

seq1  TCAAGTAGAGTGTCTTCTTGCAAAATATGTTAGGGAATTCGAAGTACAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGAGTGTCTTCTTGCAAAATATGTTAGGGAATTCGAAGTACAAT  1025

seq1  TTCAGGTACAACATACTCTGGGAAATTCTGCATGAAGAGTCTCAGCAAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTACAACATACTCTGGGAAATTCTGCATGAAGAGTCTCAGCAAGA  1075

seq1  ATTC  1104
      ||||
seq2  ATTC  1079


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