BAC Information

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BAC

Clone NameB6Ng01-158M05
Chromosome8 (Build37)
Map Location 111,898,135 - 112,020,670
singlet/doubletdoublet
Overlap geneLOC100042829, Pmfbp1
Upstream geneAtbf1, 4922502B01Rik, Gm1943
Downstream geneDhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158M05.bB6Ng01-158M05.g
ACCDH952627DH952628
length1,1081,132
definitionDH952627|Mus musculus domesticus DNA, BAC clone: B6Ng01-158M05, 5' end.DH952628|Mus musculus domesticus DNA, BAC clone: B6Ng01-158M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,019,532 - 112,020,670)(111,898,135 - 111,899,307)
sequence
gaattccaggcagaggccttcagagtatcaatatgcattaggtatagatt
tgagctgacatttcatcaatcatagctctgtaaccaggactagagatagg
agatgaaccaagggtttaaatgttgacccttgggcgcgctgtctgacagc
attctgcatctgaaatcgttagtgatggctgaaatagctaaccaatgcag
ctaggtgaaggaagcttcatttccatacgctgtggattcagatacccagt
tttactggtgcaagattcaaaactacccagaattacatgacattggccaa
gctacccatcctgaggcaaagtagtgagtgctaatactgcagttgcttcc
atgatcatggtcatcattagaaattcagctatttaatgacagttgatttt
gtattgattaaatgagctctttgtcaatcattatgccttctcaaatgtat
atttcaagaggggaagtcaggcatttctcctctgattaaaggactgacaa
acagtttcacgtatattcctagggagagctgtgtcaaacttaagctcatg
actcagcagctcttggagagctaagaacatctaagattcaaaatggcagc
attcttggcctttagggacttgaagaaggaggcttggaaaaaaattggag
ttgtagttcctaaggtaactttgtagtcaaatggtaaccccagctaactg
tctctgggaaatgatttgtccaaggacaaaggtcaatcttcaacaaataa
tggaaaaccacttttaactatcaccaatacctacaggcatgcgggtcagt
ggtagatactggctagctgtggaatgccgatgctttttgttggtacttcg
tagttccctcctattttgggccatcatgtcctgaggggctattctgctag
aggggagggctcaggaggacaggacctttatgtcatttacttttcgaact
tcagacaggcctggtacattgagatgtcaagacatgttaatgaaaaaaaa
aaaaaagctagaaatgtatatcagctctgttctagggaaactagcagcag
tgcctgtgcatagtaccagcagaaggacgacggtgtttagagcagcttac
ttcttggc
gaattcttttgtttctgccctcccagcactgggctcacaggcacatacca
ccgtagctggtttttttaatatgggtgttggcagtctgaactcagttcct
tgtgcctgtatagcgagcactttactggttacaagatagttctatcatct
gaaaatttcagaggtataaatgtgctgtttggttctataatactcctagt
ctgtaatctgtggatacatcacagagtcatctgcagaagtcttaagtgac
ttacacgaaggggtccttctccagtatatttaggagtttgctcctgcaag
tgtatatcactgacctgagagcattgcttggttttggagtcttaaatttc
tcagattagtggtttctggacttctaagtttagaatagtaagagatataa
gtcctcagactcggtgaaacacacagattctcaggagagactagcttccc
acttgtgggccaggagaaagaaacacatccttacaacagccaatggactg
tccccagccccagcctcattcccagccccagcccagccttttaagagttc
aagtattgtgtagagatctcagttccaactcgttaacttctattggtctt
tgtactcatctgactactaaaaattaattaccgtggtcactgagacaggg
cagatgccataatgcctgtgtcccagggctcattgctctcagttcaagtc
tctctttgtacctgtcaccttggggagtggcccacttataaatgtgtccc
tttgttgttctgttttattcaagaatatcttaacattttgggtgaaaagt
tttgggtcatctggtctaccatccgtgtggaaatgaaactatcaattcac
ttttcatgctgcaggcagagaaccttttgaaaatccaagtgtgactgcat
tataggccttccttaaaacacacttgactagcttcccaatagtgtgatat
gagattcatagctatagccctgaatggtttcacccgtgctatttctctaa
cttctgtacataatctccattctcctactccacagggttctgtgctttag
gctgtatgttccaccactacaatgtgccactcctcagtacctatactgat
tcacatggttacatgcatctattgggtgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112019532_112020670
seq2: B6Ng01-158M05.b_46_1153 (reverse)

seq1  GCCAAGAAGTAAGCTGCTTCTAAAACCAACACTTCTGCTCCTTTCCTGCT  50
      ||||||||||||||||| ||||     |||||   |  |||||  |||| 
seq2  GCCAAGAAGTAAGCTGC-TCTA-----AACAC-CGTCGTCCTT--CTGC-  40

seq1  GTGTTACTATTGCCACAGGGCACTTGCTGCTAGTTTTCCCTGGGAACAGG  100
       || ||||||   |||| ||||| ||||||||| |||||||  |||||| 
seq2  -TGGTACTAT--GCACA-GGCAC-TGCTGCTAG-TTTCCCT-AGAACAGA  83

seq1  GGCCTGGTATACATTTTCTAGGCTTTTTTTTTTTTTTTCATTTAACATGT  150
      |  ||| |||||| |||||||   |||||||||||||||| |||||||||
seq2  G--CTGATATACA-TTTCTAG--CTTTTTTTTTTTTTTCA-TTAACATGT  127

seq1  CTTTGGAACATCTTCAATGTACCAGGCCTTGTTCTGGAAGTTCGAAAAGT  200
      |||    ||||| ||||||||||||||||   ||| ||||||||||||||
seq2  CTT---GACATC-TCAATGTACCAGGCCT--GTCT-GAAGTTCGAAAAGT  170

seq1  AAATGACATAAAGGTCCCTGTCCTCCTGGGCCCTCCCCTCTAGCAGAATA  250
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  AAATGACATAAAGGT-CCTGTCCTCCTGAGCCCTCCCCTCTAGCAGAATA  219

seq1  GCCCCTCAGGACATGATGGCCCAAAATAGGAGGGAACTACGAAGTACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCAGGACATGATGGCCCAAAATAGGAGGGAACTACGAAGTACCAA  269

seq1  CAAAAAGCATCGGCATTCCACAGCTAGCCAGTATCTACCACTGACCCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCATCGGCATTCCACAGCTAGCCAGTATCTACCACTGACCCGCA  319

seq1  TGCCTGTAGGTATTGGTGATAGTTAAAAGTGGTTTTCCATTATTTGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAGGTATTGGTGATAGTTAAAAGTGGTTTTCCATTATTTGTTGA  369

seq1  AGATTGACCTTTGTCCTTGGACAAATCATTTCCCAGAGACAGTTAGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGACCTTTGTCCTTGGACAAATCATTTCCCAGAGACAGTTAGCTGG  419

seq1  GGTTACCATTTGACTACAAAGTTACCTTAGGAACTACAACTCCAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCATTTGACTACAAAGTTACCTTAGGAACTACAACTCCAATTTTT  469

seq1  TTCCAAGCCTCCTTCTTCAAGTCCCTAAAGGCCAAGAATGCTGCCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCCTCCTTCTTCAAGTCCCTAAAGGCCAAGAATGCTGCCATTTT  519

seq1  GAATCTTAGATGTTCTTAGCTCTCCAAGAGCTGCTGAGTCATGAGCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTAGATGTTCTTAGCTCTCCAAGAGCTGCTGAGTCATGAGCTTAA  569

seq1  GTTTGACACAGCTCTCCCTAGGAATATACGTGAAACTGTTTGTCAGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACACAGCTCTCCCTAGGAATATACGTGAAACTGTTTGTCAGTCCT  619

seq1  TTAATCAGAGGAGAAATGCCTGACTTCCCCTCTTGAAATATACATTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGAGGAGAAATGCCTGACTTCCCCTCTTGAAATATACATTTGAG  669

seq1  AAGGCATAATGATTGACAAAGAGCTCATTTAATCAATACAAAATCAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATAATGATTGACAAAGAGCTCATTTAATCAATACAAAATCAACTG  719

seq1  TCATTAAATAGCTGAATTTCTAATGATGACCATGATCATGGAAGCAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAATAGCTGAATTTCTAATGATGACCATGATCATGGAAGCAACTG  769

seq1  CAGTATTAGCACTCACTACTTTGCCTCAGGATGGGTAGCTTGGCCAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAGCACTCACTACTTTGCCTCAGGATGGGTAGCTTGGCCAATGT  819

seq1  CATGTAATTCTGGGTAGTTTTGAATCTTGCACCAGTAAAACTGGGTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATTCTGGGTAGTTTTGAATCTTGCACCAGTAAAACTGGGTATCT  869

seq1  GAATCCACAGCGTATGGAAATGAAGCTTCCTTCACCTAGCTGCATTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCACAGCGTATGGAAATGAAGCTTCCTTCACCTAGCTGCATTGGTT  919

seq1  AGCTATTTCAGCCATCACTAACGATTTCAGATGCAGAATGCTGTCAGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCAGCCATCACTAACGATTTCAGATGCAGAATGCTGTCAGACA  969

seq1  GCGCGCCCAAGGGTCAACATTTAAACCCTTGGTTCATCTCCTATCTCTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCCCAAGGGTCAACATTTAAACCCTTGGTTCATCTCCTATCTCTAG  1019

seq1  TCCTGGTTACAGAGCTATGATTGATGAAATGTCAGCTCAAATCTATACCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTACAGAGCTATGATTGATGAAATGTCAGCTCAAATCTATACCT  1069

seq1  AATGCATATTGATACTCTGAAGGCCTCTGCCTGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  AATGCATATTGATACTCTGAAGGCCTCTGCCTGGAATTC  1108

seq1: chr8_111898135_111899307
seq2: B6Ng01-158M05.g_67_1198

seq1  GAATTCTTTTGTTTCTGCCCTCCCAGCACTGGGCTCACAGGCACATACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTTCTGCCCTCCCAGCACTGGGCTCACAGGCACATACCA  50

seq1  CCGTAGCTGGTTTTTTTAATATGGGTGTTGGCAGTCTGAACTCAGTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGCTGGTTTTTTTAATATGGGTGTTGGCAGTCTGAACTCAGTTCCT  100

seq1  TGTGCCTGTATAGCGAGCACTTTACTGGTTACAAGATAGTTCTATCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTATAGCGAGCACTTTACTGGTTACAAGATAGTTCTATCATCT  150

seq1  GAAAATTTCAGAGGTATAAATGTGCTGTTTGGTTCTATAATACTCCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCAGAGGTATAAATGTGCTGTTTGGTTCTATAATACTCCTAGT  200

seq1  CTGTAATCTGTGGATACATCACAGAGTCATCTGCAGAAGTCTTAAGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCTGTGGATACATCACAGAGTCATCTGCAGAAGTCTTAAGTGAC  250

seq1  TTACACGAAGGGGTCCTTCTCCAGTATATTTAGGAGTTTGCTCCTGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACGAAGGGGTCCTTCTCCAGTATATTTAGGAGTTTGCTCCTGCAAG  300

seq1  TGTATATCACTGACCTGAGAGCATTGCTTGGTTTTGGAGTCTTAAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCACTGACCTGAGAGCATTGCTTGGTTTTGGAGTCTTAAATTTC  350

seq1  TCAGATTAGTGGTTTCTGGACTTCTAAGTTTAGAATAGTAAGAGATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTAGTGGTTTCTGGACTTCTAAGTTTAGAATAGTAAGAGATATAA  400

seq1  GTCCTCAGACTCGGTGAAACACACAGATTCTCAGGAGAGACTAGCTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGACTCGGTGAAACACACAGATTCTCAGGAGAGACTAGCTTCCC  450

seq1  ACTTGTGGGCCAGGAGAAAGAAACACATCCTTACAACAGCCAATGGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGGCCAGGAGAAAGAAACACATCCTTACAACAGCCAATGGACTG  500

seq1  TCCCCAGCCCCAGCCTCATTCCCAGCCCCAGCCCAGCCTTTTAAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCCCCAGCCTCATTCCCAGCCCCAGCCCAGCCTTTTAAGAGTTC  550

seq1  AAGTATTGTGTAGAGATCTCAGTTCCAACTCGTTAACTTCTATTGGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGTGTAGAGATCTCAGTTCCAACTCGTTAACTTCTATTGGTCTT  600

seq1  TGTACTCATCTGACTACTAAAAATTAATTACCGTGGTCACTGAGACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCATCTGACTACTAAAAATTAATTACCGTGGTCACTGAGACAGGG  650

seq1  CAGATGCCATAATGCCTGTGTCCCAGGGCTCATTGCTCTCAGTTCAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCATAATGCCTGTGTCCCAGGGCTCATTGCTCTCAGTTCAAGTC  700

seq1  TCTCTTTGTACCTGTCACCTTGGGGAGTGGCCCACTTATAAATGTGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGTACCTGTCACCTTGGGGAGTGGCCCACTTATAAATGTGTCCC  750

seq1  TTTGTTGTTCTGTTTTATTCAAGAATATCTTAACATTTTGGGTGAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTCTGTTTTATTCAAGAATATCTTAACATTTTGGGTGAAAAGT  800

seq1  TTTGGGTCATCTGGTCTACCATCCGTGTGGAAATGAAACTATCAATTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCATCTGGTCTACCATCCGTGTGGAAATGAAACTATCAATTCAC  850

seq1  TCTTCATGCTGCAGGCAGAGAAACCTTTTGAAAATCCAAGTGTGACTGCA  900
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTCATGCTGCAGGCAGAG-AACCTTTTGAAAATCCAAGTGTGACTGCA  899

seq1  TTATAGGCCTTCCTTAAAACACACTTGACTAGCTTCCCAATAGTTGTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTATAGGCCTTCCTTAAAACACACTTGACTAGCTTCCCAATAG-TGTGAT  948

seq1  AATGAGATTCATAGCCTATAAGGCCCTGAATGGTTTCACCCTTGCTTATT  1000
       ||||||||||||| |||||  ||||||||||||||||||| ||| ||||
seq2  -ATGAGATTCATAG-CTATA--GCCCTGAATGGTTTCACCCGTGC-TATT  993

seq1  TCTCTAACCTCCTGTTACATTATATTCCTCCCCATTCTCCCTACTCACAC  1050
      ||||||| || ||| ||||| |      || ||||||| ||||||| |||
seq2  TCTCTAA-CTTCTG-TACATAA------TCTCCATTCT-CCTACTC-CAC  1033

seq1  AGGTGTTCCTGTGGCTTTCTGGGCTGTATGTTTCCACCCACCTACAATGT  1100
      ||| ||| |||| ||||  | ||||||||| |||||||   |||||||||
seq2  AGG-GTT-CTGT-GCTT--TAGGCTGTATG-TTCCACC--ACTACAATGT  1075

seq1  GCCCACATCACTTC-CAGTTACTCATAATTCAGATTTCAACATAGTTATA  1149
      ||      |||| | ||||  ||    || | ||||   |||| |||| |
seq2  GC------CACTCCTCAGTACCT----ATACTGATT--CACATGGTTACA  1113

seq1  CAGTGGCATCTATTGGGGTGCATT  1173
           ||||||||| |||||||||
seq2  ----TGCATCTATT-GGGTGCATT  1132