BAC Information

Click to search

BAC

Clone NameB6Ng01-158M22
Chromosome8 (Build37)
Map Location 104,025,127 - 104,171,218
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042086, LOC100042092, LOC384895
Downstream geneCdh11
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158M22.bB6Ng01-158M22.g
ACCDH952658DH952659
length1,173970
definitionDH952658|Mus musculus domesticus DNA, BAC clone: B6Ng01-158M22, 5' end.DH952659|Mus musculus domesticus DNA, BAC clone: B6Ng01-158M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,025,127 - 104,026,319)(104,170,244 - 104,171,218)
sequence
gaattcagattatactcctccagtttcaaccctgtttgaatgtagccatc
aaattgaactcaaggttgcctaaggcatatcaggttaagttgtgtgtagc
ttcagtttgtcaagataggacaagttacttctcatagtagacacaaacca
aacaaaaccaaaaatggtcctcaaattatactcacttaagatctaaagtt
aaactgcgtgtatgtacttatttttctgtttaaaccaaagtctactttct
tttaacatactgaacctgtttcttaggacttctggttactttcatcttgt
tattcattctatagaagaaagtttccagtgctactgaggcagatgggata
ggaataggagaaagcacacttctattctaagtttcaagtagttcatgtta
gtcttggtttcagaggaaagactggaattggttagctgaccctaaaacaa
ttgagtgagaaataagagcacatgtatatcttactggttagccaccaata
tgtataagatacttacccagaaactatacaattcttccttaatgaatttg
gccagatgatgtttgaattctatttgcaatgtagaaatgtattaggagaa
gcaccacatataaaaacaaagtaaaaaatgtaaagattttcatgaattaa
aaatacaatatatacaaataacaacccatcttttatttaatgtaacatag
agttaattgcatctcaaaacttcattatcatcagtcaaataggaaaatta
aagttctatcaataaatgacgatgttggtagatatttgatctttgataca
catgaagatctaaataaacactggtctagactcttttagttataattcac
atctttttcatttgtggatatttctcttcattattatttttaatatctca
ccatgcagaaaatgtcaaaggcaaatcagtgataaattacttacaggaca
acactaaacatatagattaaatgtagtagcaatatatatagattcagcag
cttttctaaactgaagtgcagttaagactatacaaatgtttcatggggct
gaaagaaatgtctgaatataaagaggcatgctgcacttcgagaccctggt
tgatttccattcaaacatatgcttctaatgactctactcagttccgaatt
ctatttcttatccagtcttcagt
gaattcattacctgtgcctctttatgataatattttaatttcatatttct
gttttccattttcaaagtacaaaggctacacataatcaaatattcatagg
tgaataagtaaatgaataccaataaaatggtcttccaccatgattaaaca
gggttctgtgcaaacagggtctttaactatgtgttagctatagtttcata
cctgtagagaagtgttcattattttcaaagattttttttaaggcttagaa
aagccaaacaaacaaacaaatgcataagctaagcttcaacacagatgtgg
tgagttcaaaagctttatcaatttctattctggtcgtgcctcacccaaga
tttgcccaggtagaaaatcctcacactgccaatgaactgaggacttggag
gactgctgcttttgcaccatctctaaatataaactgtaaatcactatctg
tggttggcaggaacaattgtactttgggttttcaaatatttccaatctgc
tctgcatagttttttaatcactgaacattctgttctggaagactgatggt
gggatagacttaaagtttttagggtgattgatttggaacaattagtgatg
tgatatttttccacatttggaaaaccacagaatgggatgataactgtaaa
taggaaaggatggattgattactttttttgtggtcactctccctcaatga
tatgtccagagtcatattggtttaatgagaactaaaatttctctatatta
aattggcattcactgaatcatctggattcacaaggtttgggacgttttgt
ccaagtatagaatggggctcttcatgtgcgtgatgatttgggttttatga
ggatgttatagagagaaaattttattttgggatgattgaaaacattgcag
tccacttctcacatcagtatatcaacatgtaaaatagaataggtagtgtt
agttatggtagggatgatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104025127_104026319
seq2: B6Ng01-158M22.b_49_1221

seq1  GAATTCAGATTATACTCCTCCAGTTTCAACCCTGTTTGAATGTAGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTATACTCCTCCAGTTTCAACCCTGTTTGAATGTAGCCATC  50

seq1  AAATTGAACTCAAGGTTGCCTAAGGCATATCAGGTTAAGTTGTGTGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAACTCAAGGTTGCCTAAGGCATATCAGGTTAAGTTGTGTGTAGC  100

seq1  TTCAGTTTGTCAAGATAGGACAAGTTACTTCTCATAGTAGACACAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGTCAAGATAGGACAAGTTACTTCTCATAGTAGACACAAACCA  150

seq1  AACAAAACCAAAAATGGTCCTCAAATTATACTCACTTAAGATCTAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCAAAAATGGTCCTCAAATTATACTCACTTAAGATCTAAAGTT  200

seq1  AAACTGCGTGTATGTACTTATTTTTCTGTTTAAACCAAAGTCTACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCGTGTATGTACTTATTTTTCTGTTTAAACCAAAGTCTACTTTCT  250

seq1  TTTAACATACTGAACCTGTTTCTTAGGACTTCTGGTTACTTTCATCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATACTGAACCTGTTTCTTAGGACTTCTGGTTACTTTCATCTTGT  300

seq1  TATTCATTCTATAGAAGAAAGTTTCCAGTGCTACTGAGGCAGATGGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCTATAGAAGAAAGTTTCCAGTGCTACTGAGGCAGATGGGATA  350

seq1  GGAATAGGAGAAAGCACACTTCTATTCTAAGTTTCAAGTAGTTCATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGGAGAAAGCACACTTCTATTCTAAGTTTCAAGTAGTTCATGTTA  400

seq1  GTCTTGGTTTCAGAGGAAAGACTGGAATTGGTTAGCTGACCCTAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTTTCAGAGGAAAGACTGGAATTGGTTAGCTGACCCTAAAACAA  450

seq1  TTGAGTGAGAAATAAGAGCACATGTATATCTTACTGGTTAGCCACCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGAGAAATAAGAGCACATGTATATCTTACTGGTTAGCCACCAATA  500

seq1  TGTATAAGATACTTACCCAGAAACTATACAATTCTTCCTTAATGAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGATACTTACCCAGAAACTATACAATTCTTCCTTAATGAATTTG  550

seq1  GCCAGATGATGTTTGAATTCTATTTGCAATGTAGAAATGTATTAGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGATGTTTGAATTCTATTTGCAATGTAGAAATGTATTAGGAGAA  600

seq1  GCACCACATATAAAAACAAAGTAAAAAATGTAAAGATTTTCATGAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACATATAAAAACAAAGTAAAAAATGTAAAGATTTTCATGAATTAA  650

seq1  AAATACAATATATACAAATAACAACCCATCTTTTATTTAATGTAACATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATATATACAAATAACAACCCATCTTTTATTTAATGTAACATAG  700

seq1  AGTTAATTGCATCTCAAAACTTCATTATCATCAGTCAAATAGGAAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTGCATCTCAAAACTTCATTATCATCAGTCAAATAGGAAAATTA  750

seq1  AAGTTCTATCAATAAATGACGATGTTGGTAGATATTTGATCTTTGATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATCAATAAATGACGATGTTGGTAGATATTTGATCTTTGATACA  800

seq1  CATGAAGATCTAAATAAACACTGGTCTAGACTCTTTTAGTTATAATTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATCTAAATAAACACTGGTCTAGACTCTTTTAGTTATAATTCAC  850

seq1  ATCTTTTTCATTTGTGGATATTTCTCTTCATTATTATTTTTAATATCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTTTTTCATTTGTGGATATTTCTCTTCATTATTATTTTTAATATCTC-  899

seq1  ACCATGCAGAAAATGTCAAAGGCAAATCAGTGATAAATTAC-TACAGGAC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCATGCAGAAAATGTCAAAGGCAAATCAGTGATAAATTACTTACAGGAC  949

seq1  AACACTAAACATATAGATTAAATGTAAGTAAGCAATATATATAAGAATTC  999
      ||||||||||||||||||||||||| ||| |||||||||||||   ||||
seq2  AACACTAAACATATAGATTAAATGT-AGT-AGCAATATATATA--GATTC  995

seq1  AGCAGCCTTTTCTTAAACTGAAGTGCAGTT-AGACTATAACAAATGTTTC  1048
      ||||| |||||| ||||||||||||||||| ||||||| |||||||||||
seq2  AGCAG-CTTTTC-TAAACTGAAGTGCAGTTAAGACTAT-ACAAATGTTTC  1042

seq1  ATGGGGGCTGGAGAGAAATGTCTGAGTAT-AAGA-GCATTGGCTGCACTT  1096
      || |||||| || |||||||||||| ||| |||| ||||  |||||||||
seq2  AT-GGGGCT-GAAAGAAATGTCTGAATATAAAGAGGCAT--GCTGCACTT  1088

seq1  CCAAAGGACCCTGGGTTGATTCCCA-TCAAACATAGTGCCTCATAATGAC  1145
      | |   |||||| |||||||| ||| ||||||||| ||| || |||||| 
seq2  CGA---GACCCT-GGTTGATTTCCATTCAAACATA-TGCTTC-TAATGA-  1131

seq1  CTCTAACTCCAGTTCCAGAATATCTATTTCCCTAATCCAGTCTCCAGT  1193
      |||| ||| ||||||| |||| |||||||  || ||||||||| ||||
seq2  CTCT-ACT-CAGTTCC-GAAT-TCTATTT--CTTATCCAGTCTTCAGT  1173

seq1: chr8_104170244_104171218
seq2: B6Ng01-158M22.g_70_1039 (reverse)

seq1  TAATCATCCCCTACCATAACTAAACACTACCTATTCTATTTTACATGTTG  50
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TAATCAT-CCCTACCATAACT-AACACTACCTATTCTATTTTACATGTTG  48

seq1  ATATACTGATGTTGAGAAGTGGGACTGCAATGTTTTCAATCATCCCAAAA  100
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  ATATACTGATG-TGAGAAGT-GGACTGCAATGTTTTCAATCATCCCAAAA  96

seq1  TTAAAATTTTCTCTCTATAACATCCTCATAAAACCCAAATCATCACGCAC  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAAAATTTTCTCTCTATAACATCCTCATAAAACCCAAATCATCACGCAC  145

seq1  ATGAAGAGCCCCATTCTATACTTGGACAAAACGTCCCAAACCTTGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGCCCCATTCTATACTTGGACAAAACGTCCCAAACCTTGTGAAT  195

seq1  CCAGATGATTCAGTGAATGCCAATTTAATATAGAGAAATTTTAGTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGATTCAGTGAATGCCAATTTAATATAGAGAAATTTTAGTTCTCA  245

seq1  TTAAACCAATATGACTCTGGACATATCATTGAGGGAGAGTGACCACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCAATATGACTCTGGACATATCATTGAGGGAGAGTGACCACAAAA  295

seq1  AAAGTAATCAATCCATCCTTTCCTATTTACAGTTATCATCCCATTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCAATCCATCCTTTCCTATTTACAGTTATCATCCCATTCTGTG  345

seq1  GTTTTCCAAATGTGGAAAAATATCACATCACTAATTGTTCCAAATCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCAAATGTGGAAAAATATCACATCACTAATTGTTCCAAATCAATC  395

seq1  ACCCTAAAAACTTTAAGTCTATCCCACCATCAGTCTTCCAGAACAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAAAACTTTAAGTCTATCCCACCATCAGTCTTCCAGAACAGAATG  445

seq1  TTCAGTGATTAAAAAACTATGCAGAGCAGATTGGAAATATTTGAAAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATTAAAAAACTATGCAGAGCAGATTGGAAATATTTGAAAACCC  495

seq1  AAAGTACAATTGTTCCTGCCAACCACAGATAGTGATTTACAGTTTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAATTGTTCCTGCCAACCACAGATAGTGATTTACAGTTTATATT  545

seq1  TAGAGATGGTGCAAAAGCAGCAGTCCTCCAAGTCCTCAGTTCATTGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGGTGCAAAAGCAGCAGTCCTCCAAGTCCTCAGTTCATTGGCAG  595

seq1  TGTGAGGATTTTCTACCTGGGCAAATCTTGGGTGAGGCACGACCAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGATTTTCTACCTGGGCAAATCTTGGGTGAGGCACGACCAGAATA  645

seq1  GAAATTGATAAAGCTTTTGAACTCACCACATCTGTGTTGAAGCTTAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGATAAAGCTTTTGAACTCACCACATCTGTGTTGAAGCTTAGCTT  695

seq1  ATGCATTTGTTTGTTTGTTTGGCTTTTCTAAGCCTTAAAAAAAATCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTGTTTGTTTGTTTGGCTTTTCTAAGCCTTAAAAAAAATCTTTG  745

seq1  AAAATAATGAACACTTCTCTACAGGTATGAAACTATAGCTAACACATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGAACACTTCTCTACAGGTATGAAACTATAGCTAACACATAGT  795

seq1  TAAAGACCCTGTTTGCACAGAACCCTGTTTAATCATGGTGGAAGACCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCCTGTTTGCACAGAACCCTGTTTAATCATGGTGGAAGACCATT  845

seq1  TTATTGGTATTCATTTACTTATTCACCTATGAATATTTGATTATGTGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTATTCATTTACTTATTCACCTATGAATATTTGATTATGTGTAG  895

seq1  CCTTTGTACTTTGAAAATGGAAAACAGAAATATGAAATTAAAATATTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACTTTGAAAATGGAAAACAGAAATATGAAATTAAAATATTATC  945

seq1  ATAAAGAGGCACAGGTAATGAATTC  975
      |||||||||||||||||||||||||
seq2  ATAAAGAGGCACAGGTAATGAATTC  970