BAC Information

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BAC

Clone NameB6Ng01-159G16
Chromosome8 (Build37)7 (Build37)
Map Location 54,398,188 - 54,398,619140,640,860 - 140,641,114
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159G16.bB6Ng01-159G16.g
ACCDH953087DH953088
length425465
definitionDH953087|Mus musculus domesticus DNA, BAC clone: B6Ng01-159G16, 5' end.DH953088|Mus musculus domesticus DNA, BAC clone: B6Ng01-159G16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,398,188 - 54,398,619)(140,640,860 - 140,641,114)
sequence
cattattcgtgcaaacttcatatgcctcagtacagggaaactttagggcc
aagaagtgggtgtgggttgttgggggagtaggtgggggagcgtgtgggcg
aatttgggatagcattggaaatgtaaatgaaataaatacccaatagaaaa
tatcaaaaaaaacccatgaatgcaagaggaagacatttatgaaatcagga
atatatatatatatatatatatatatatatatatatatatatatatatac
gtacacacatatatgcacatatataagatgggttgaaaaatatagataac
aaacaatgacattttacacttttacctcattaatttaaaccatactctta
caagtgactgtatcaggtgatagagtctttaataactgttcaacttgata
ctttagatataaacaacttttctct
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagcccacgttcttgagttctttatatatattggatattagtccc
ttatctctctctctctctctctctctctctctctctctctctctctctct
cacacacacgcactcacacacacacacacataagagggggtgtgttgtaa
ataaaaaaaatctctctcttttttttttatatatatatataaaaaaaaaa
taaaaatatatattgatttttatactctcacactacgagaaaaaaaaaca
cacaaaactctcagaaaaagagagtgtgctctctctcttatgtgtataca
ctagagagtgcgcgcgcgtgagagagaaaagacactctctcagacagagt
gactcatagatatatctatagagagagtgtgagaatatatatatgagaga
cagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54398188_54398619
seq2: B6Ng01-159G16.b_45_475 (reverse)

seq1  AGAGAATAATTGTTTATATATAAAGTCTCAAGTTGTAACAGGTATTAAAG  50
      |||||| | |||||||||| |||||| |||||||| ||||| ||||||||
seq2  AGAGAAAAGTTGTTTATATCTAAAGTATCAAGTTG-AACAGTTATTAAAG  49

seq1  ACTCCATCACCTGATACAGTCACTTGTAAGAGTATGGTTTAAATTAATGA  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATCACCTGATACAGTCACTTGTAAGAGTATGGTTTAAATTAATGA  99

seq1  GGTAAAAGTGTAAAATGTCATTGTTTGTTATCTATATTTTACAACCCATC  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTAAAAGTGTAAAATGTCATTGTTTGTTATCTATATTTTTCAACCCATC  149

seq1  TTATATATGTGCATATATGTGTGTACGTATATATATATATATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATGTGCATATATGTGTGTACGTATATATATATATATATATATAT  199

seq1  ATATATATATATATATATATATATATTCCTGATTTCATAAATGTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATTCCTGATTTCATAAATGTCTTCCT  249

seq1  CTTGCATTCATGGGTTTTTTTTGATATTTTCTATTGGGTATTTATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTCATGGGTTTTTTTTGATATTTTCTATTGGGTATTTATTTCAT  299

seq1  TTACATTTCCAATGCTATCCCAAATTCGCCCACACGCTCCCCCACCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCAATGCTATCCCAAATTCGCCCACACGCTCCCCCACCTACT  349

seq1  CCCCCAACAACCCACACCCACTTCTTGGCCCTAAAGTTTCCCTGTACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACAACCCACACCCACTTCTTGGCCCTAAAGTTTCCCTGTACTGA  399

seq1  GGCATATGAAGTTTGCACGAATAATGGAATTC  432
      ||||||||||||||||||||||||||||||||
seq2  GGCATATGAAGTTTGCACGAATAATGGAATTC  431

seq1: chr7_140640860_140641114
seq2: B6Ng01-159G16.g_168_529 (reverse)

seq1  CTCTCTCTCTCTCTGTCTCTC----------TCTCTCTCTGTCTC-----  35
      |||||||||||||||||||||          |||| | || ||||     
seq2  CTCTCTCTCTCTCTGTCTCTCATATATATATTCTCACACTCTCTCTATAG  50

seq1  ---TGTCTCTGTCTCTCTCTCTC--------TCTC-TCTCTCTCTCACAC  73
         | ||| ||  || |||| ||        | || | |||||||||| |
seq2  ATATATCTATGAGTCACTCTGTCTGAGAGAGTGTCTTTTCTCTCTCACGC  100

seq1  ACAC-CA-TGAATAAAGTAAAAAGTATAACAG---GAGC-----------  107
       | | || |   ||  ||| | |  |||| ||   ||||           
seq2  GCGCGCACTCTCTAGTGTATACA-CATAAGAGAGAGAGCACACTCTCTTT  149

seq1  ----TAGAGTAATGAG----CTTAGATCTC-TAGCAT--CCATATAGAAA  146
           |||||  || |     ||   |||| |||  |     |||| |||
seq2  TTCTGAGAGTTTTGTGTGTTTTTTTTTCTCGTAGTGTGAGAGTATAAAAA  199

seq1  GCCAGGCATGGCTGTGTTTGTGT-------------------------GT  171
       | |   ||   | | ||| | |                         | 
seq2  TCAATATATATTTTTATTTTTTTTTTATATATATATATAAAAAAAAAAGA  249

seq1  GTGTG-----------------------------TGTGTGTGTGTGTGTG  192
      | | |                             | ||||||||||||||
seq2  GAGAGATTTTTTTTATTTACAACACACCCCCTCTTATGTGTGTGTGTGTG  299

seq1  TGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  242
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  349

seq1  AGAGAGAGAGAGA  255
      |||||||||||||
seq2  AGAGAGAGAGAGA  362