BAC Information

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BAC

Clone NameB6Ng01-159H14
Chromosome8 (Build37)
Map Location 86,218,111 - 86,436,093
singlet/doubletdoublet
Overlap genePkn1, Ddx39, Cd97, EG384857, Lphn1
Upstream geneLOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1
Downstream geneAsf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H14.bB6Ng01-159H14.g
ACCDH953128DH953129
length954559
definitionDH953128|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H14, 5' end.DH953129|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,218,111 - 86,219,065)(86,435,527 - 86,436,093)
sequence
gaattcactatgcagaccagggtggcttatagctcatatatctgcttcta
tatcccaggtactgggattaagggtgtgtgccatggaagaggttcttccc
acatcaacccctaaatggccatgcctgcttctctggagacaagccaggga
gaaacagtcctcaatgcctgacacattggatacacacatccacagtatat
tatgtagcaggcaggatattgtgtggtacacagcatgtgtgtggaccaca
gtcttataggtgtggtcagagttccagctctgcgagtgtgagatttgcac
acctcaattgaggaattgcctctgtcggattggcctgtgggcgtgtctat
gggatattttcttcattgctaactgatgtgggagagcccagctccctgtg
ggcagtgccatcctgggcaggtggacctgggataagaaaagaagctgagc
aagccagaggaagtgagccagtgagcagtgctcctctgtggttttgcttt
aagcttctgtcttgagctccagccctgacttcattccatgatggactata
atttataaaaccaaaccaaccctttcctccccaagttgcttttggtcagt
cttttatcacagtgacggaaagcagactagaccagtccccacctgcacga
atgtgtaggtagaacataagttcccaaaggtgtgcgcgtctagctctgca
ggtctgtgcctggctcagtgtgtgcacagaatgctaattcacacacggtc
gccctgcatgtgtatgtctgggacccaggctcagaatgcagagcagtctc
acacatactgcttccatcggtatcagcatggaggtaggacacagcttcat
aaacatgcacacttccctacctgcctgcacatatccttgataaacaacag
cttttggtgctagttttcgtcctttggagctactcacaaaccctccactt
gcca
tgggggatgggggggaggtatataaattctccagagggtatataaatgcc
aggatcccaagattcatttggtgtgttgttggttggttgccatttgttaa
gtagcaaagaagaaacaaggaggaattagatatccagacagcaaagatca
aacttgccccaaggaacttgatggccctaatcagcaggaagtagtcttaa
tgatgaggtcacccctttctgccccacccccacccctttttcagtcctat
ctagggttaggaggttgaaagggtggaagaagaaggtgaaggaagaagaa
aatagcccccactaagtagccaacactggctacagtatactctctgactc
cactggattcttgattttaagtccaagacattctcagcatgtgccctggt
ctccaccggcttagcctatggagtgcaaccgtgttttgcagactatgcca
ccataggtgtgctctgcactcttggctttttccaaagttttctgcgttat
aaaaacatggtgggttaatttgggaaaacaagaacttgtaatattttcct
accatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86218111_86219065
seq2: B6Ng01-159H14.b_35_988

seq1  GAATTCACTATGCAGACCAGGGTGGCTTAGAGCTCATATATCTGCTTCTA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCACTATGCAGACCAGGGTGGCTTATAGCTCATATATCTGCTTCTA  50

seq1  TATCCCAGGTACTGGGATTAAGGGTGTGTGCCATGGAAGAGGTTCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGGTACTGGGATTAAGGGTGTGTGCCATGGAAGAGGTTCTTCCC  100

seq1  ACATCAACCCCTAAATGGCCATGCCTGCTTCTCTGGAGACAAGCCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACCCCTAAATGGCCATGCCTGCTTCTCTGGAGACAAGCCAGGGA  150

seq1  GAAACAGTCCTCAATGCCTGACACATTGGATACACACATCCACAGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTCCTCAATGCCTGACACATTGGATACACACATCCACAGTATAT  200

seq1  TATGTAGCAGGCAGGATATTGTGTGGTACACAGCATGTGTGTGGACCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCAGGCAGGATATTGTGTGGTACACAGCATGTGTGTGGACCACA  250

seq1  GTCTTATAGGTGTGGTCAGAGTTCCAGCTCTGCGAGTGTGAGATTTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAGGTGTGGTCAGAGTTCCAGCTCTGCGAGTGTGAGATTTGCAC  300

seq1  ACCTCAATTGAGGAATTGCCTCTGTCGGATTGGCCTGTGGGCGTGTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATTGAGGAATTGCCTCTGTCGGATTGGCCTGTGGGCGTGTCTAT  350

seq1  GGGATATTTTCTTCATTGCTAACTGATGTGGGAGAGCCCAGCTCCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTTCTTCATTGCTAACTGATGTGGGAGAGCCCAGCTCCCTGTG  400

seq1  GGCAGTGCCATCCTGGGCAGGTGGACCTGGGATAAGAAAAGAAGCTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGCCATCCTGGGCAGGTGGACCTGGGATAAGAAAAGAAGCTGAGC  450

seq1  AAGCCAGAGGAAGTGAGCCAGTGAGCAGTGCTCCTCTGTGGTTTTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGGAAGTGAGCCAGTGAGCAGTGCTCCTCTGTGGTTTTGCTTT  500

seq1  AAGCTTCTGTCTTGAGCTCCAGCCCTGACTTCATTCCATGATGGACTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTGTCTTGAGCTCCAGCCCTGACTTCATTCCATGATGGACTATA  550

seq1  ATTTATAAAACCAAACCAACCCTTTCCTCCCCAAGTTGCTTTTGGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAAACCAAACCAACCCTTTCCTCCCCAAGTTGCTTTTGGTCAGT  600

seq1  CTTTTATCACAGTGACGGAAAGCAGACTAGACCAGTCCCCACCTGCACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCACAGTGACGGAAAGCAGACTAGACCAGTCCCCACCTGCACGA  650

seq1  ATGTGTAGGTAGAACATAAGTTCCCAAAGGTGTGCGCGTCTAGCTCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGGTAGAACATAAGTTCCCAAAGGTGTGCGCGTCTAGCTCTGCA  700

seq1  GGTCTGTGCCTGGCTCAGTGTGTGCACAGAATGCTAATTCACACACGGCC  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTCTGTGCCTGGCTCAGTGTGTGCACAGAATGCTAATTCACACACGGTC  750

seq1  G-CCTGCAGGTGTATGTCTGGGACCCAGGCTCAGGAATGCAGAGCAGTCT  799
      | |||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  GCCCTGCATGTGTATGTCTGGGACCCAGGCTCA-GAATGCAGAGCAGTCT  799

seq1  CACACATACTGCTCCCATCGGTATCAGCATGGAGGTAGGACACAGCTTCA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACACATACTGCTTCCATCGGTATCAGCATGGAGGTAGGACACAGCTTCA  849

seq1  TAAACATGCACACTCCCACACCTGCCTGCACACA-CCCTGATAAACAAAC  898
      |||||||||||||| ||  ||||||||||||| | || |||||||| |||
seq2  TAAACATGCACACTTCCCTACCTGCCTGCACATATCCTTGATAAAC-AAC  898

seq1  AGCTTTGGGTGCTAGTTTTCGTCCCTTGGAAGCTACTCACAAACCCTCCA  948
      |||||| ||||||||||||||||| |||| ||||||||||||||||||||
seq2  AGCTTTTGGTGCTAGTTTTCGTCCTTTGG-AGCTACTCACAAACCCTCCA  947

seq1  CCTGCCA  955
      | |||||
seq2  CTTGCCA  954

seq1: chr8_86435527_86436093
seq2: B6Ng01-159H14.g_71_635 (reverse)

seq1  AATGATGGTAGGAAAATATTACAAGCTCTTGTTTTCCCATAATTAAACCA  50
      || |||||||||||||||||||||| ||||||||||||| |||||| |||
seq2  AAAGATGGTAGGAAAATATTACAAGTTCTTGTTTTCCCA-AATTAACCCA  49

seq1  CCATGTTTTTATAAACGCAGAAAACTTTGGAAAAAGCCAAGAGTGCAGAG  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTTAT-AACGCAGAAAACTTTGGAAAAAGCCAAGAGTGCAGAG  98

seq1  CACACCTATGGTGGCATAGTCTGCGAAACACGGTTGCACTCCATAGGCTA  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACACCTATGGTGGCATAGTCTGCAAAACACGGTTGCACTCCATAGGCTA  148

seq1  AGCCGGTGGAGACCAGGGCACATGCTGCGAATGTCTTGGACTTAAAATCA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCGGTGGAGACCAGGGCACATGCTGAGAATGTCTTGGACTTAAAATCA  198

seq1  AGACTCCAGTGGAGTCAGAGAGTATACTGTAGCCAGTGTTGGCTACTTAG  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCAGTGGAGTCAGAGAGTATACTGTAGCCAGTGTTGGCTACTTAG  248

seq1  TGGGGGCTCTTTTCTTCTTCCTTCACCTTCTTCTTCCACCCTTTCAACCT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTATTTTCTTCTTCCTTCACCTTCTTCTTCCACCCTTTCAACCT  298

seq1  CCTAACCCTAGATAGGACTGAAAAAGGGGTGGGGGTGGGGCAGAAAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCTAGATAGGACTGAAAAAGGGGTGGGGGTGGGGCAGAAAGGGG  348

seq1  TGACCTCATCATTAAGACTACTTCCTGCTGATTAGGGCCATCAAGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATCATTAAGACTACTTCCTGCTGATTAGGGCCATCAAGTTCCT  398

seq1  TGGGGCAAGTTTGATCTTTGCTGTCTGGATATCTAATTCCTCCTTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAGTTTGATCTTTGCTGTCTGGATATCTAATTCCTCCTTGTTTC  448

seq1  TTCTTTGCTACTTAACAAATGGCAACCAACCAACAACACACCAAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTACTTAACAAATGGCAACCAACCAACAACACACCAAATGAAT  498

seq1  CTTGGGATCCTGGCATTTATATACCCTCTGGAGAATTTATATACCTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATCCTGGCATTTATATACCCTCTGGAGAATTTATATACCTCCCC  548

seq1  CCCATCCCCCAGAATTC  567
      |||||||||||||||||
seq2  CCCATCCCCCAGAATTC  565