BAC Information

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BAC

Clone NameB6Ng01-159K01
Chromosome8 (Build37)1 (Build37)
Map Location 5,476,161 - 5,477,23059,949,300 - 59,949,507
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159K01.bB6Ng01-159K01.g
ACCDH953237DH953238
length1,175901
definitionDH953237|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K01, 5' end.DH953238|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,476,161 - 5,477,230)(59,949,300 - 59,949,507)
sequence
gaattcagcaagattgtaaaagctaagtcactcccttacacaggaattta
ccatcacttaaaaagaaggaagtttcagaccaaaggagaaaccagaatag
atactatagcagagttacacccatacacacgtatttacaatggcctaagg
ggaaggtggactatacaagagactaaaataggaactgtggcaaggacggg
aagcccttgaccctggcttctaagattagtgaattttaggtggagccctt
gttgatcccagctgttatcaatgtattctatcctgggtggttcccgttag
acattttgtgtttgcattcctctgttttatgtaagattctggtcacctca
attgtaccttgcgaatatgtcacccaacttccttattgtcctctgcataa
aaagtctgatgctcgagttgtaaaattacattcagatgccacacaaactc
tcctgcgtgtgtgtctgtctgtcattcatccacgctttgcccacccgcat
cgagagacccagttccacgcagacacagggacccaaaaggtctgtggcaa
aaattatgtaattagtaaatggtaaatttagtgcctggtcttaaataaga
gtgttatgaaggctcctgttctttcctcgacccagtgagctcagctccat
aaacaaagccttattgtaatatcatgtcacataaggatactttaatcagt
tctctctaaactgttctgtgctcaatggacaagctcaaatcatagtggct
taccacaacagcagcttattctcatattcaaaactttgtctacatctaaa
ttacacattttttttatgtgtgaggtttgtgctgaagaaacatatcctac
ttgggatgcacagttcctaaggctttaggagtagaacaaaggctgtactg
agcttgagtttctaagttggtgcatgggtcatcacatttgatcacacaca
atgtatagcaatgtgtcattcagtgtactgaatgcagaacaatagtgaat
ctttgagcaaataatgatttcatgcatttgacttctctactatgcacaaa
atcggtttagggacagtacatttctgcatttcttgctagtgttattctca
gtctcttctggatctcgttttctttgaacaatcatgtattctagcacatt
cctaggtccattgtctctgtttcaa
gaattctcttgttttgtgttttctttagattcataggaatggctgcttgg
gttgagggcagttgtcttgggttgcttcttgtcttctgatccagcaagaa
gtttccacccatgttaaaggctgaaatcctagaggctttagtggcttctg
aatggcatctgtggtattttgcataggaatggcctccatagattcatgtg
tttgagtgcctggaccatagctagtggcacaactaggtggtatgaccttg
gagtaggtgtggccttgttggaggatgggtatcactgtggaagctttgag
gtctcctatgttcaagctaagcccagtttgacacatagtctccttatgct
gcctgcagatcaagatgtagatagaactcttagctcgttctccagcacca
tgtcttcctgcacaatgctatgtttcctgtcatgataatggaataaaccg
ttgaaagtataagccagccccaattaggtttcatttataaaagatgcctt
gggcatagtgtcccttcacaacaatcaaacccaaaataagacagcttcta
tttctattttcaggtcttgaccatttttgtttcctttaactgtttggttt
gatttgtttgttttctttaaggattttccttatttcctccaattttgttt
gtcttttcctgtttttctttaaaggatttatttacttcttctttaaggac
ctttgtcatcttcatacagttggattttagaggtggtgtgtgtgtgtgtg
ttttcagttatgttgaggtattcagggctttgctgtagtaggagaactcc
agtgaagccatattgtcctgtctgttattgcttgtgttcttattctgtca
actagtcatctaggtctgtgatgattatgccttaagcctaagtacacttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5476161_5477230
seq2: B6Ng01-159K01.b_171_1219

seq1  ACACGTATTTACAATGGCCTAAGGGGAAGGTGGACTATACAAGAGACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTATTTACAATGGCCTAAGGGGAAGGTGGACTATACAAGAGACTAA  50

seq1  AATAGGAACTGTGGCAAGGACGGGAAGCCCTTGACCCTGGCTTCTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAACTGTGGCAAGGACGGGAAGCCCTTGACCCTGGCTTCTAAGAT  100

seq1  TAGTGAATTTTAGGTGGAGCCCTTGTTGATCCCAGCTGTTATCAATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATTTTAGGTGGAGCCCTTGTTGATCCCAGCTGTTATCAATGTAT  150

seq1  TCTATCCTGGGTGGTTCCCGTTAGACATTTTGTGTTTGCATTCCTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTGGGTGGTTCCCGTTAGACATTTTGTGTTTGCATTCCTCTGTT  200

seq1  TTATGTAAGATTCTGGTCACCTCAATTGTACCTTGCGAATATGTCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAAGATTCTGGTCACCTCAATTGTACCTTGCGAATATGTCACCCA  250

seq1  ACTTCCTTATTGTCCTCTGCATAAAAAGTCTGATGCTCGAGTTGTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTATTGTCCTCTGCATAAAAAGTCTGATGCTCGAGTTGTAAAAT  300

seq1  TACATTCAGATGCCACACAAACTCTCCTGCGTGTGTGTCTGTCTGTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAGATGCCACACAAACTCTCCTGCGTGTGTGTCTGTCTGTCATT  350

seq1  CATCCACGCTTTGCCCACCCGCATCGAGAGACCCAGTTCCACGCAGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACGCTTTGCCCACCCGCATCGAGAGACCCAGTTCCACGCAGACAC  400

seq1  AGGGACCCAAAAGGTCTGTGGCAAAAATTATGTAATTAGTAAATGGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCAAAAGGTCTGTGGCAAAAATTATGTAATTAGTAAATGGTAAA  450

seq1  TTTAGTGCCTGGTCTTAAATAAGAGTGTTATGAAGGCTCCTGTTCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCCTGGTCTTAAATAAGAGTGTTATGAAGGCTCCTGTTCTTTCC  500

seq1  TCGACCCAGTGAGCTCAGCTCCATAAACAAAGCCTTATTGTAATATCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCCAGTGAGCTCAGCTCCATAAACAAAGCCTTATTGTAATATCATG  550

seq1  TCACATAAGGATACTTTAATCAGTTCTCTCTAAACTGTTCTGTGCTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAGGATACTTTAATCAGTTCTCTCTAAACTGTTCTGTGCTCAAT  600

seq1  GGACAAGCTCAAATCATAGTGGCTTACCACAACAGCAGCTTATTCTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGCTCAAATCATAGTGGCTTACCACAACAGCAGCTTATTCTCATA  650

seq1  TTCAAAACTTTGTCTACATCTAAATTACACATTTTTTTTATGTGTGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTTTGTCTACATCTAAATTACACATTTTTTTTATGTGTGAGGT  700

seq1  TTGTGCTGAAGAAACATATCCTACTTGGGATGCACAGTTCCTAAGGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGAAGAAACATATCCTACTTGGGATGCACAGTTCCTAAGGCTTT  750

seq1  AGGAGTAGAACAAAGGCTGTACTGAGCTTGAGTTTCTAAGTTGGTGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGAACAAAGGCTGTACTGAGCTTGAGTTTCTAAGTTGGTGCATG  800

seq1  GGTCATCACATTTGATCACACACAATGTATAGCAATGTGTCATTCAGGTG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTCATCACATTTGATCACACACAATGTATAGCAATGTGTCATTCA-GTG  849

seq1  TACTGAATGGAAGAAACAATAGTGAATCTTTGAGCAAATAATGAATTTCA  900
      ||||||||| |   ||||||||||||||||||||||||||||| ||||||
seq2  TACTGAATGCA--GAACAATAGTGAATCTTTGAGCAAATAATG-ATTTCA  896

seq1  TTGCATTTGACTTCTCTACTATGCACAAAATCGGTTTAGGGACAGTACAA  950
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -TGCATTTGACTTCTCTACTATGCACAAAATCGGTTTAGGGACAGTACA-  944

seq1  TTTTCTGCATTTTCTTGTCTAGTTGGTATATCTCAGTCTCTTCTGGATCT  1000
       |||||||| ||||||| |||| || ||| ||||||||||||||||||| 
seq2  -TTTCTGCA-TTTCTTG-CTAG-TGTTAT-TCTCAGTCTCTTCTGGATC-  988

seq1  TCGTTTTTCTCTTGAAACATTCATGTATTCTAGCACACATTCTTGGCTCC  1050
      ||||||   ||||  |||| |||||||||||||  ||||||| | | |||
seq2  TCGTTT---TCTTTGAACAATCATGTATTCTAG--CACATTCCTAGGTCC  1033

seq1  ACTTTTGTTCTCTGTTTCAA  1070
      |   ||| ||||||||||||
seq2  A---TTG-TCTCTGTTTCAA  1049

seq1: chr1_59949300_59949507
seq2: B6Ng01-159K01.g_313_538 (reverse)

seq1  TTGGGGCTGGCTTACA-GCTCAGAGG---------TTGCCCTGGCATGAA  40
      |||||||||||||| |   |||  ||         ||  | || || |||
seq2  TTGGGGCTGGCTTATACTTTCAACGGTTTATTCCATTATCATGACAGGAA  50

seq1  GCATGGCATCATGCAGGCAGACATGGTGCTGGAGAAGGAGCTGAAGAG--  88
       ||| ||||  |||||| |||||||||||||||||| ||||| |||||  
seq2  ACATAGCATTGTGCAGGAAGACATGGTGCTGGAGAACGAGCT-AAGAGTT  99

seq1  --CTCTACAT-----TCTGAAGGCAGCAGGAAAAGAGAGAGAGCC--GCT  129
         |||||||     |||| ||||||||  |  |||    | | |   ||
seq2  CTATCTACATCTTGATCTGCAGGCAGCATAAGGAGACTATGTGTCAAACT  149

seq1  AGGGCTGGCTTGAACTTCTGACACCTCCGAGCCCACCCCCAGTGACACAC  179
       ||  | |||||||| |  || |||||  ||  |  || |||||| || |
seq2  GGGCTTAGCTTGAACATAGGAGACCTCAAAG--CTTCCACAGTGATACCC  197

seq1  TTCCTCCAACAAGGCCACACCTACTCCAA  208
       ||||||||||||||||||||||||||||
seq2  ATCCTCCAACAAGGCCACACCTACTCCAA  226