BAC Information

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BAC

Clone NameB6Ng01-160G21
Chromosome8 (Build37)
Map Location 66,084,571 - 66,200,212
singlet/doubletdoublet
Overlap genenone
Upstream geneSpock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989, Cpe, Sc4mol
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160G21.bB6Ng01-160G21.g
ACCDH953805DH953806
length1,0441,095
definitionDH953805|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G21, 5' end.DH953806|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,084,571 - 66,085,507)(66,199,099 - 66,200,212)
sequence
gaattctttattgtttatacttctatttttagatgctggatggttttgtt
aaattctttcacctgtttagtagtgttttcctatagttctttaagggttt
ttagtgtttctcctttaatggcttctacctttttacctgtgttttcctgt
aattctttaagggatttttgtgtttactctctaaggacttctacctgttt
agctgtgtttttctgtatttttttaagggagttattaatgtccttcttaa
aatcctctatcagcatcgtgagataagattttaaatacgaatcttgcttt
tccagtgtgttggggtatccaggacttgctgtggtgggatagctgggttc
tgatgatgccaagtactcttggtttctgtagtaatattctcatgtttgcc
ttttgccatctagtaatctctggtgttagatgttctaactgtctctggct
ggagcttgttcccctgtgagtctgtaagtctgtttcagcactcctgggag
atcagttcttgccttacaagaccagtgctctgagggccacagaacagccc
tccctcctagctgcagatgtaggcctttaggaccctgtccttgagctctg
ttgcctttgctctcctcggaggacctgtgttagagagacaccagagggaa
aagagtgatatcacctgagttcaggggtcagaacactctctggatgtaag
ctcttgtggggcagtgggtgtgggggaaacagtgagtgggagaaaacccc
agtcccactagagttctggtgctctgggctggcagaagactgttgtaagc
tttccatgtagccccttggtgggtgtctggctgtgtaaagcactgacccc
aggtcggcgggtggtggacaaggggcagtcctaggcaccagattctcatc
ctcagcatcgattacaccactggacacagtgcaggagctgaaaacgaatg
agggttccgggggcaggtcagttagcttcgggcagaaagaggaaggccaa
gggggagagaagtgctgggtagttccacctgccaaatctttggt
gaattctgggtatcaaatatcatttggtttagcagttactgtcattaccc
acatcaaccattttacaactcccaaggcacaagcatttaagtgaatgtag
aaattgaaaagtttgcatataattatggaaagaatgatgcactactaaaa
cttccaaaatctcattgaacaggttttttgggcagctgtatgacttttta
aaaggaaacaatttatcctaaaacaaaatgtaaattaataaagtgttttc
attaagaaaatcatattcagcatggcaggtaactggtattgggataagac
actaataaataattttaaaaaatttaatctctaaatttttagcattttaa
atatagacatagattatttgcctttcagatatgaataaagttttatggga
aagtttaggaaagcttttattttcttttagtcctaaggaacaatattttg
ttgtttgttgttgtttttcactcttaattgttgccctttggctgataaaa
tgagtcattttttttctgtatagttttgtttgcttttcctgtttatatta
ttcaaggagggacaacttaatgatgttatatagatataaccactttctcc
ccaaaatatctatttcatgattttatttcaatttcctttagatcaaagag
tattcacagatatatttcataacaaaaattacttcatttagaaagtttct
tctttatgatttttctcaaagaaatccatttcatctttttcagagaagat
gtttctcatgacaaacaatgtttatttctaattagcatatttttaccata
tatattgctttcatgcaaattgtgtatgatgtatattaaataactttcat
tgtaaatgttttgagttgtcatctgatgtaattcctttcactgacatttg
atatgatttgaaaagtcatattaaagtgtatatgtgtttctgtcatatct
ttatctattactatttagatttgagtgatgctgtttataataggatatca
ttctagaggcacaaaaattaatctagtcactggtcaaggttaattactaa
tggggccctaggtcagagatttattctatgaggggccttgttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_66084571_66085507
seq2: B6Ng01-160G21.b_160_1090

seq1  TTTAATGGCTTCTACCTTTTTACCTGTGTTTTCCTGTAATTCTTTAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGCTTCTACCTTTTTACCTGTGTTTTCCTGTAATTCTTTAAGGG  50

seq1  ATTTTTGTGTTTACTCTCTAAGGACTTCTACCTGTTTAGCTGTGTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGTTTACTCTCTAAGGACTTCTACCTGTTTAGCTGTGTTTTTC  100

seq1  TGTATTTTTTTAAGGGAGTTATTAATGTCCTTCTTAAAATCCTCTATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTTTAAGGGAGTTATTAATGTCCTTCTTAAAATCCTCTATCAG  150

seq1  CATCGTGAGATAAGATTTTAAATACGAATCTTGCTTTTCCAGTGTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGAGATAAGATTTTAAATACGAATCTTGCTTTTCCAGTGTGTTGG  200

seq1  GGTATCCAGGACTTGCTGTGGTGGGATAGCTGGGTTCTGATGATGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCAGGACTTGCTGTGGTGGGATAGCTGGGTTCTGATGATGCCAAG  250

seq1  TACTCTTGGTTTCTGTAGTAATATTCTCATGTTTGCCTTTTGCCATCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGGTTTCTGTAGTAATATTCTCATGTTTGCCTTTTGCCATCTAG  300

seq1  TAATCTCTGGTGTTAGATGTTCTAACTGTCTCTGGCTGGAGCTTGTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTGGTGTTAGATGTTCTAACTGTCTCTGGCTGGAGCTTGTTCCC  350

seq1  CTGTGAGTCTGTAAGTCTGTTTCAGCACTCCTGGGAGATCAGTTCTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTCTGTAAGTCTGTTTCAGCACTCCTGGGAGATCAGTTCTTGCC  400

seq1  TTACAAGACCAGTGCTCTGAGGGCCACAGAACAGCCCTCCCTCCTAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGACCAGTGCTCTGAGGGCCACAGAACAGCCCTCCCTCCTAGCTG  450

seq1  CAGATGTAGGCCTTTAGGACCCTGTCCTTGAGCTCTGTTGCCTTTGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAGGCCTTTAGGACCCTGTCCTTGAGCTCTGTTGCCTTTGCTCT  500

seq1  CCTCGGAGGACCTGTGTTAGAGAGACACCAGAGGGAAAAGAGTGATATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGAGGACCTGTGTTAGAGAGACACCAGAGGGAAAAGAGTGATATCA  550

seq1  CCTGAGTTCAGGGGTCAGAACACTCTCTGGATGTAAGCTCTTGTGGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAGGGGTCAGAACACTCTCTGGATGTAAGCTCTTGTGGGGCA  600

seq1  GTGGGTGTGGGGGAAACAGTGAGTGGGAGAAAACCCCAGTCCCACTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTGGGGGAAACAGTGAGTGGGAGAAAACCCCAGTCCCACTAGAG  650

seq1  TTCTGGTGCTCTGGGCTGGCAGAAGACTGTTGTAAGCTTTCCATGTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGCTCTGGGCTGGCAGAAGACTGTTGTAAGCTTTCCATGTAGCC  700

seq1  CC-TGGTGGGTGTCTGGCTGTGTAAAGCACTGACCCCAGGTCGGCGGGTG  749
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGGGTGTCTGGCTGTGTAAAGCACTGACCCCAGGTCGGCGGGTG  750

seq1  GTGGACAAGGGGCAGTCCTAGGCACCAGATTCTCATCCTCAGGCATCGAA  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GTGGACAAGGGGCAGTCCTAGGCACCAGATTCTCATCCTCA-GCATCGAT  799

seq1  TACACCACTGGACACAGTGCAAGAGCTGAGAACAGAATGAGGGTTCCGGG  849
      ||||||||||||||||||||| ||||||| ||| ||||||||||||||||
seq2  TACACCACTGGACACAGTGCAGGAGCTGAAAAC-GAATGAGGGTTCCGGG  848

seq1  GGCAGGTCAGTTAGCCTCGGGCAGAAGAGAGGAGAGGGCAAGGGGGAGAG  899
      ||||||||||||||| |||||||||| |||||| ||| ||||||||||||
seq2  GGCAGGTCAGTTAGCTTCGGGCAGAA-AGAGGA-AGGCCAAGGGGGAGAG  896

seq1  -AGTGCTGGGTAGTTCCCACCTGGGCGAGAGTCTTTGGT  937
       |||||||||||||| ||||||  || | | ||||||||
seq2  AAGTGCTGGGTAGTT-CCACCT--GCCA-AATCTTTGGT  931

seq1: chr8_66199099_66200212
seq2: B6Ng01-160G21.g_65_1159 (reverse)

seq1  CCCAACAAGAGCTCCCTCAATGAATTAAAATCTCTGA-CTATGGCCCCAT  49
      ||||||||| || ||||||  ||||  |||||||||| ||| ||||||||
seq2  CCCAACAAG-GC-CCCTCATAGAAT--AAATCTCTGACCTAGGGCCCCAT  46

seq1  TAGTAAATTAACTTGTGACCAGTGACTAAGATTTTAATTTTTGTGCCTCT  99
      |||| ||||||| | |||||||||||| |||  |||||||||||||||||
seq2  TAGT-AATTAACCT-TGACCAGTGACT-AGA--TTAATTTTTGTGCCTCT  91

seq1  AG-ATGATATTCCTAATTTATTATACAGCATCACTCAAATCTAAATAGTT  148
      || |||||| |||||  ||| || ||||||||||||||||||||||||| 
seq2  AGAATGATA-TCCTA--TTA-TAAACAGCATCACTCAAATCTAAATAGT-  136

seq1  AAATAGAATAAAAGATATGAACAGAAACACATATACACTTTAATATGACT  198
       ||||||   ||||||||| ||||||||||||||||||||||||||||| 
seq2  -AATAGA--TAAAGATATG-ACAGAAACACATATACACTTTAATATGAC-  181

seq1  TTTTCAAATTCATATTCAAATGTCAGTGAAAGGAATTACATCAGATGACA  248
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTCAAA-TCATA-TCAAATGTCAGTGAAAGGAATTACATCAGATGACA  229

seq1  ACTCAAAAACATTTACAATG-AAGTTATTTAATATACATCATACACAATT  297
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTC-AAAACATTTACAATGAAAGTTATTTAATATACATCATACACAATT  278

seq1  TGCATGAAAGCAATATATATGGTAAAAATATGCTAATTAGAAATAAACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAAGCAATATATATGGTAAAAATATGCTAATTAGAAATAAACAT  328

seq1  TGTTTGTCATGAGAAACATCTTCTCTGAAAAAGATGAAATGGATTTCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCATGAGAAACATCTTCTCTGAAAAAGATGAAATGGATTTCTTT  378

seq1  GAGAAAAATCATAAAGAAGAAACTTTCTAAATGAAGTAATTTTTGTTATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATCATAAAGAAGAAACTTTCTAAATGAAGTAATTTTTGTTATG  428

seq1  AAATATATCTGTGAATACTCTTTGATCTAAAGGAAATTGAAATAAAATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATCTGTGAATACTCTTTGATCTAAAGGAAATTGAAATAAAATCA  478

seq1  TGAAATAGATATTTTGGGGAGAAAGTGGTTATATCTATATAACATCATTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGATATTTTGGGGAGAAAGTGGTTATATCTATATAACATCATTA  528

seq1  AGTTGTCCCTCCTTGAATAATATAAACAGGAAAAGCAAACAAAACTATAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCCTCCTTGAATAATATAAACAGGAAAAGCAAACAAAACTATAC  578

seq1  AGAAAAAAAATGACTCATTTTATCAGCCAAAGGGCAACAATTAAGAGTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAATGACTCATTTTATCAGCCAAAGGGCAACAATTAAGAGTGA  628

seq1  AAAACAACAACAAACAACAAAATATTGTTCCTTAGGACTAAAAGAAAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAAACAACAAAATATTGTTCCTTAGGACTAAAAGAAAATA  678

seq1  AAAGCTTTCCTAAACTTTCCCATAAAACTTTATTCATATCTGAAAGGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTCCTAAACTTTCCCATAAAACTTTATTCATATCTGAAAGGCAA  728

seq1  ATAATCTATGTCTATATTTAAAATGCTAAAAATTTAGAGATTAAATTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTATGTCTATATTTAAAATGCTAAAAATTTAGAGATTAAATTTTT  778

seq1  TAAAATTATTTATTAGTGTCTTATCCCAATACCAGTTACCTGCCATGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTTATTAGTGTCTTATCCCAATACCAGTTACCTGCCATGCTG  828

seq1  AATATGATTTTCTTAATGAAAACACTTTATTAATTTACATTTTGTTTTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTTTCTTAATGAAAACACTTTATTAATTTACATTTTGTTTTAG  878

seq1  GATAAATTGTTTCCTTTTAAAAAGTCATACAGCTGCCCAAAAAACCTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTGTTTCCTTTTAAAAAGTCATACAGCTGCCCAAAAAACCTGTT  928

seq1  CAATGAGATTTTGGAAGTTTTAGTAGTGCATCATTCTTTCCATAATTATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGATTTTGGAAGTTTTAGTAGTGCATCATTCTTTCCATAATTATA  978

seq1  TGCAAACTTTTCAATTTCTACATTCACTTAAATGCTTGTGCCTTGGGAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTTTTCAATTTCTACATTCACTTAAATGCTTGTGCCTTGGGAGT  1028

seq1  TGTAAAATGGTTGATGTGGGTAATGACAGTAACTGCTAAACCAAATGATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGGTTGATGTGGGTAATGACAGTAACTGCTAAACCAAATGATA  1078

seq1  TTTGATACCCAGAATTC  1114
      |||||||||||||||||
seq2  TTTGATACCCAGAATTC  1095