BAC Information

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BAC

Clone NameB6Ng01-160J03
Chromosome8 (Build37)
Map Location 99,888,844 - 100,014,416
singlet/doubletdoublet
Overlap geneLOC546090
Upstream geneLOC333331
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160J03.bB6Ng01-160J03.g
ACCDH953909DH953910
length1,182509
definitionDH953909|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J03, 5' end.DH953910|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,888,844 - 99,890,058)(100,013,900 - 100,014,416)
sequence
gaattctttatttcatccatgtcaagttggcttagagattatttcatatt
cagggaggtatgattctacaacctaagaattaggtgagtagtagtcatag
ttactcaaagaagttttatgtagttgtctactctttataggtagtttttt
ttccccagagaatcagtaatgtcactgtttaatattcacctactctaggc
cctttaaggcatctatataattggtacagtcttggagacctcacaacatg
ggaaccgtggcaagtagcctaatgttcctctcatgtcatccctcagactc
cccatggagaccttatggaaatatatttgcaagtacgcagtactacataa
taaaatggtttgcatatgtaaagttactaataagttgttccaaaagtaga
aagccttatcatgatgtcataagatctttaaaataacaatgaacattctc
tgactcatggtagaacgaagaagggggagacaaagaaaatcaatcactgg
agagaggcattttccctattccaagtataagaaggatttgaagactaaaa
gactgatcctgtctgaatgctgtcatgtttacaccttgatgataatggac
tgaacctctgaacctgtaagccagccccagtgaagtgttgtcctttataa
gactctccttgatcatgttgtctgttcatagcagtaaaatcttaactaag
acaaggactgtgcaacaagtcatgttatagtgctataacaaaaattgggt
tctattgtttgataatatcaccacatagcctacagataaactaaggctca
gagacttgccattcactaaatacaatgtatcgatctaaaatgtagctctg
taccatggtcctatctgttgtggatggccctggtgctgttttgtatttga
tggttattccactttccaggattgagtcatgtactcaggtgacttcttgt
taaaccttcttctaatgaataagaaaccaatcactgggcaaataggtgaa
cttccaggatggagaaagaaatgaagagcagagagagatattggcttttg
aaaggggcagctagacaagatgtagctactatgatccttgctagatggtg
atcggtatgaatcgcacaagaattaattaatgctcagattgatctaggat
gtgctagctatgaattacaagtgtttctaagc
tgggatagagtcaggcacaggagatcagctgggaagttgggaggagacag
acacatggtacctgagcacaggtaatcaggcacatggcagaatgtaggtt
aaaataaatgggagattttagttaagaactagtcagagtagagcgtagat
atatgatcaaggtgtatatatatatatatatatatatatatatatatata
tatattgtaaatatatttgagtctgagtctgctttctgccctcatgctct
ctctctcactctttcatacacattcatatatgtgtatgcgtatatgggta
cgtggtggggggcgggttgtgtctgtgtgggtgtgtatgcgtgtggacgg
gagtgtgtgagagtctgtctcgggctgtgtcatacggtccgggagagata
gacataagtatagagaagaacacgggcgaagcggctataaacaaatgaag
atatactaaagaaaaactgtgattatcatagttttctcaaaacatataac
tgactgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_99888844_99890058
seq2: B6Ng01-160J03.b_44_1225

seq1  GAATTCTTTATTTCATCCATGTCAAGTTGGCTTAGAGATTATTTCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTCATCCATGTCAAGTTGGCTTAGAGATTATTTCATATT  50

seq1  CAGGGAGGTATGATTCTACAACCTAAGAATTAGGTGAGTAGTAGTCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGTATGATTCTACAACCTAAGAATTAGGTGAGTAGTAGTCATAG  100

seq1  TTACTCAAAGAAGTTTTATGTAGTTGTCTACTCTTTATAGGTAGTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAGAAGTTTTATGTAGTTGTCTACTCTTTATAGGTAGTTTTTT  150

seq1  TTCCCCAGAGAATCAGTAATGTCACTGTTTAATATTCACCTACTCTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGAGAATCAGTAATGTCACTGTTTAATATTCACCTACTCTAGGC  200

seq1  CCTTTAAGGCATCTATATAATTGGTACAGTCTTGGAGACCTCACAACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGGCATCTATATAATTGGTACAGTCTTGGAGACCTCACAACATG  250

seq1  GGAACCGTGGCAAGTAGCCTAATGTTCCTCTCATGTCATCCCTCAGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGTGGCAAGTAGCCTAATGTTCCTCTCATGTCATCCCTCAGACTC  300

seq1  CCCATGGAGACCTTATGGAAATATATTTGCAAGTACGCAGTACTACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAGACCTTATGGAAATATATTTGCAAGTACGCAGTACTACATAA  350

seq1  TAAAATGGTTTGCATATGTAAAGTTACTAATAAGTTGTTCCAAAAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGTTTGCATATGTAAAGTTACTAATAAGTTGTTCCAAAAGTAGA  400

seq1  AAGCCTTATCATGATGTCATAAGATCTTTAAAATAACAATGAACATTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTATCATGATGTCATAAGATCTTTAAAATAACAATGAACATTCTC  450

seq1  TGACTCATGGTAGAACGAAGAAGGGGGAGACAAAGAAAATCAATCACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATGGTAGAACGAAGAAGGGGGAGACAAAGAAAATCAATCACTGG  500

seq1  AGAGAGGCATTTTCCCTATTCCAAGTATAAGAAGGATTTGAAGACTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCATTTTCCCTATTCCAAGTATAAGAAGGATTTGAAGACTAAAA  550

seq1  GACTGATCCTGTCTGAATGCTGTCATGTTTACACCTTGATGATAATGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCCTGTCTGAATGCTGTCATGTTTACACCTTGATGATAATGGAC  600

seq1  TGAACCTCTGAACCTGTAAGCCAGCCCCAGTGAAGTGTTGTCCTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTGAACCTGTAAGCCAGCCCCAGTGAAGTGTTGTCCTTTATAA  650

seq1  GACTCTCCTTGATCATGTTGTCTGTTCATAGCAGTAAAATCTTAACTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCTTGATCATGTTGTCTGTTCATAGCAGTAAAATCTTAACTAAG  700

seq1  ACAAGGACTGTGCAACAAGTCATGTTATAGTGCTATAACAAAAATTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACTGTGCAACAAGTCATGTTATAGTGCTATAACAAAAATTGGGT  750

seq1  TCTATTGTTTGATAATATCACCACATAGCCTACAGATAAACTAAGGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTTGATAATATCACCACATAGCCTACAGATAAACTAAGGCTCA  800

seq1  GAGACTTGCCATTCACTAAATACAATGTATCGATCTAAAATGTAGCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGCCATTCACTAAATACAATGTATCGATCTAAAATGTAGCTCTG  850

seq1  TACCATGGTCCTATCTGTTGTGGATGGCCCTGGTGCTGTTTGTAATTTGA  900
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TACCATGGTCCTATCTGTTGTGGATGGCCCTGGTGCTGTTTTGTATTTGA  900

seq1  TGTTAATTCCACTTTCCCAGGAATGAGTCATGTACTCAGGTGACTTCTTG  950
      || | |||||||||| |||||| |||||||||||||||||||||||||||
seq2  TGGTTATTCCACTTT-CCAGGATTGAGTCATGTACTCAGGTGACTTCTTG  949

seq1  -TAAACCTTCCTCTAATGAATAAAGAAACCAATCACTGGGCAAATAGGTG  999
       ||||||||| |||||||||| ||||||||||||||||||||||||||| 
seq2  TTAAACCTTCTTCTAATGAAT-AAGAAACCAATCACTGGGCAAATAGGT-  997

seq1  GAACTTCCAGGATGGAGAAAGGAAAAGAAGAGGCAGGAGAGAGATATGGG  1049
      |||||||||||||||||||| |||| ||||| ||| ||||||||||| ||
seq2  GAACTTCCAGGATGGAGAAA-GAAATGAAGA-GCA-GAGAGAGATATTGG  1044

seq1  CTTTTGGAAGGGGGCAGTGGAAGGACAAGATGTAGCTACTAGTGATCCCT  1099
      ||||| ||| ||||||   |   |||||||||||||||||| |||||| |
seq2  CTTTT-GAAAGGGGCA---GCTAGACAAGATGTAGCTACTA-TGATCCTT  1089

seq1  GGTTTAGATGGTGAATCCGGTAGGATTCGCCACCAGAGGATTTATATTTA  1149
      |   ||||||||||   ||||| || ||| ||| |||  ||   || |||
seq2  G--CTAGATGGTGA--TCGGTATGAATCG-CACAAGA--AT---TAATTA  1129

seq1  ATATGGCTTACAAGATTATGATTCTAGTAGTTGTGCTCAGCGATTGAGTT  1199
      ||   |||    ||||  ||| |||||  | |||||| ||| | ||| ||
seq2  AT---GCT---CAGAT--TGA-TCTAG--GATGTGCT-AGCTA-TGAATT  1166

seq1  ACCATTGTTTCTAAGC  1215
      || | |||||||||||
seq2  ACAAGTGTTTCTAAGC  1182

seq1: chr8_100013900_100014416
seq2: B6Ng01-160J03.g_68_582 (reverse)

seq1  GTTCAGTCAGTTATATGATTTTGAGAAAATTATGATAATCATAGATTTAC  50
      ||||||||||||||||| ||||||||||| ||||||||||| || ||| |
seq2  GTTCAGTCAGTTATATG-TTTTGAGAAAACTATGATAATCACAGTTTTTC  49

seq1  TTTAGTATATCTTCATTTAATTATAGAACACTTCATTGATGTTCTTCTTT  100
      ||||||||||||||||||  ||||||  | ||||     ||||||||| |
seq2  TTTAGTATATCTTCATTTGTTTATAG-CCGCTTCGCCCGTGTTCTTCTCT  98

seq1  TTTCTTTTGTCCATCTTGCCTGGAACTTACTATATAGCCCAGGATAGAAT  150
       | ||| |||| ||||  || ||| | ||  | | |||||  || ||| |
seq2  ATACTTATGTCTATCTCTCCCGGACCGTATGACACAGCCCGAGACAGACT  148

seq1  CTAAGCCATTGCAGTCCTCCTGATTCTGCTTCCTAGTTGAAAAAACATGT  200
      || |  || | | |||| |  |  |   |  ||     || | |||  | 
seq2  CTCACACACTCCCGTCCACACGCATACACACCCACACAGACACAACCCGC  198

seq1  GCCACAAAAGGTATCATTAT---------TTTTTATGA--GATTAGAAAT  239
       || ||  | ||| |  |||           | |||||  |  ||  || 
seq2  CCCCCACCACGTACCCATATACGCATACACATATATGAATGTGTATGAA-  247

seq1  TAGGGTGTGGTTCTGACTCTCAGCCCCATGCTCCCAGAAATAAGACTCAG  289
       || ||| |     ||          ||||    ||||||  ||||||||
seq2  -AGAGTGAGAGAGAGA---------GCATGAGGGCAGAAAGCAGACTCAG  287

seq1  ACTCAAATATATTTACAATATATATATATATATATATATATATATATATA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATATATTTACAATATATATATATATATATATATATATATATATA  337

seq1  TATATATACACCTTGATCATATATCTACGCTCTACTCTGACTAGTTCTTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACCTTGATCATATATCTACGCTCTACTCTGACTAGTTCTTA  387

seq1  ACTAAAATCTCCCATTTATTTTAACCTACATTCTGCCATGTGCCTGATTA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATCTCCCATTTATTTTAACCTACATTCTGCCATGTGCCTGATTA  437

seq1  CCTGTGCTCAGGTACCATGTGTCTGTCTCCTCCCAACTTCCCAGCTGATC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTCAGGTACCATGTGTCTGTCTCCTCCCAACTTCCCAGCTGATC  487

seq1  TCCTGTGCCTGACTCTATCCCAGAATTC  517
      ||||||||||||||||||||||||||||
seq2  TCCTGTGCCTGACTCTATCCCAGAATTC  515