BAC Information

Click to search

BAC

Clone NameB6Ng01-160K08
Chromosome8 (Build37)
Map Location 96,396,649 - 96,552,868
singlet/doubletdoublet
Overlap geneGnao1, Amfr, Nudt21
Upstream geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneOgfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K08.bB6Ng01-160K08.g
ACCDH953965DH953966
length1,1081,088
definitionDH953965|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K08, 5' end.DH953966|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,396,649 - 96,397,766)(96,551,771 - 96,552,868)
sequence
gaattccagtacaggcctgatttttttttttaaggtaggtgcttctctgc
ctctgactgcctccctgccctagatttgctttttgttgtttgtggtttag
gcatggtgtttgtttttatttttgagacaaggtcttgctatgtagcatag
aatttgagattgcagacattcaccatcatgcctctgtagcttacagtcta
gaacttgtcctccatgcctagctactcttgagtcttacagtgctctgcca
tgcctggtgaacctgcattcttacagtgctgtttgctcatccttaagttg
aagaattgtatgtgtctttccttgtccttctgcttgggattctgtgcacc
ttttcagtctgcacgcaaggctttctcagttaggacttctgcttgctatt
tgattactgactctcatccatcactttctctttcttctagaactcccaat
atgcctgcccagtctgatctgcttgggtctgccctgcacatcattgcttt
ttctgttcacatgtgctctctgtattctcctggaagtatatctgtatact
tggaagttttattcccattagttcctgagggcctcacacccacaactcag
cagggagagacccttgtactgcagttgggaagacagtattgtactgtgta
gaacatcttctgcatgtgtcctgcattgctctctgggtactgggatggtc
tggtcatactgttatatgcctcctaaggcactgagcatgtgcactgtttc
cgactgctcttctgctggggctttaatcattcagtaatgcgttccctgtg
gttgtttgtgggacctgagtagcagcagtctgcagctggtggcatgggat
tctcactccctctagtttgatggtattgaggaaagtgaccccacaattta
cttttgggacaactggatcaatccttttccctcacatctggttctctcaa
ccctcgggctaaggttgcactatgaacttgctattgcttggcctcctaag
caacagaactgagatgttgagcctatagatccgagctacttccctctctc
cctactccccacctatcctaaacaagagggatctgctctctttcctcagg
ctcatgcc
gaattctcaggtgtgtgtattcattactatattactttgcacagatactt
ggtcgtcaagatggagtcctgcaagactgggtcattgatgactgcattgg
gaactggtggagaccaaattttgaacctcctcaggtcagtattcagttgt
gttcaccaggcatttggtaaagcagaaaagtcactaattcaagacattta
aagagtgactaagggctagtaaggtggctcagtgggtttgctaccaagcc
tcatgacccaagtttgatctctggaactcacatggtagaaggataggaca
atgttgtggcatctacacacacacacacacacacaaagtgaaaacgtttt
ttttttttttaagatgtatttatttttatgtatatgtgtgttttgcctga
atgtatgtatcctgtggaagccatagaggatgtcggatctctggaggttg
gagtcacatatggtagcgagctgccatttggatgctaggaattgaacctg
ggtcctctgaaagagcagccagtgagtgactctaactgctgagccatctc
ttcaattaccctcccaccacctttttttaaaaagaaatattagatgtctt
tttgtttttgtttgttttgtggtcaatggtagtttgcctgcatgtttgtc
tgtgtaggtgtcagatactctgaactatagttatagacagttgtgagctg
ctttgggggtgctgggaattgaaccgaggtcttttggaagaacagccagt
gttcttaactactgagccatttctccagccccataaatggaaatttttta
aataaaaaatgaaaaaataatcagagtagaccttagcttcccatttctat
tcccatttcttaattttgatttaaaaaccattttttaagaccaaacagct
tttccttcttgtgtatgagtgtgtgtctgtatatataaaaaatgtctgat
gctggggtagtctgtgggatttagtgggtccaagggagtatagtaagacg
gtgttaagttaccacagtgcggaaatgggacctctctcttaggtttatgg
acgtgagagtcactatgaaccaaggcaacccttatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96396649_96397766
seq2: B6Ng01-160K08.b_43_1150

seq1  GAATTCCAGTACAGGCCTGATTTTTTTTTTTAAGGTAGGTGCTTCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACAGGCCTGATTTTTTTTTTTAAGGTAGGTGCTTCTCTGC  50

seq1  CTCTGACTGCCTCCCTGCCCTAGATTTGCTTTTTGTTGTTTGTGGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGCCTCCCTGCCCTAGATTTGCTTTTTGTTGTTTGTGGTTTAG  100

seq1  GCATGGTGTTTGTTTTTATTTTTGAGACAAGGTCTTGCTATGTAGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGTTTGTTTTTATTTTTGAGACAAGGTCTTGCTATGTAGCATAG  150

seq1  AATTTGAGATTGCAGACATTCACCATCATGCCTCTGTAGCTTACAGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGATTGCAGACATTCACCATCATGCCTCTGTAGCTTACAGTCTA  200

seq1  GAACTTGTCCTCCATGCCTAGCTACTCTTGAGTCTTACAGTGCTCTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTCCTCCATGCCTAGCTACTCTTGAGTCTTACAGTGCTCTGCCA  250

seq1  TGCCTGGTGAACCTGCATTCTTACAGTGCTGTTTGCTCATCCTTAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGAACCTGCATTCTTACAGTGCTGTTTGCTCATCCTTAAGTTG  300

seq1  AAGAATTGTATGTGTCTTTCCTTGTCCTTCTGCTTGGGATTCTGTGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGTATGTGTCTTTCCTTGTCCTTCTGCTTGGGATTCTGTGCACC  350

seq1  TTTTCAGTCTGCACGCAAGGCTTTCTCAGTTAGGACTTCTGCTTGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTCTGCACGCAAGGCTTTCTCAGTTAGGACTTCTGCTTGCTATT  400

seq1  TGATTACTGACTCTCATCCATCACTTTCTCTTTCTTCTAGAACTCCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGACTCTCATCCATCACTTTCTCTTTCTTCTAGAACTCCCAAT  450

seq1  ATGCCTGCCCAGTCTGATCTGCTTGGGTCTGCCCTGCACATCATTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCCAGTCTGATCTGCTTGGGTCTGCCCTGCACATCATTGCTTT  500

seq1  TTCTGTTCACATGTGCTCTCTGTATTCTCCTGGAAGTATATCTGTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCACATGTGCTCTCTGTATTCTCCTGGAAGTATATCTGTATACT  550

seq1  TGGAAGTTTTATTCCCATTAGTTCCTGAGGGCCTCACACCCACAACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTTATTCCCATTAGTTCCTGAGGGCCTCACACCCACAACTCAG  600

seq1  CAGGGAGAGACCCTTGTACTGCAGTTGGGAAGACAGTATTGTACTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAGACCCTTGTACTGCAGTTGGGAAGACAGTATTGTACTGTGTA  650

seq1  GAACATCTTCTGCATGTGTCCTGCATTGCTCTCTGGGTACTGGGATGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTTCTGCATGTGTCCTGCATTGCTCTCTGGGTACTGGGATGGTC  700

seq1  TGGTCATACTGTTATATGCCTCCTAAGGCACTGAGCATGTGCACTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATACTGTTATATGCCTCCTAAGGCACTGAGCATGTGCACTGTTTC  750

seq1  CGACTGCTCTTCTGCTGGGGCTTTAATCATTCAGTAATGCGTTCCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCTCTTCTGCTGGGGCTTTAATCATTCAGTAATGCGTTCCCTGTG  800

seq1  GTTGTTTGTGGGACCTGAGTAGCAGCAGTCTGCAGCTGGTGGCATGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTGGGACCTGAGTAGCAGCAGTCTGCAGCTGGTGGCATGGGAT  850

seq1  TCTCACTCCCTCTAGTTTGATGGTATTGAGGAAAGTGACCCACCAATCTA  900
      |||||||||||||||||||||||||||||||||||||||||  |||| ||
seq2  TCTCACTCCCTCTAGTTTGATGGTATTGAGGAAAGTGACCCCACAATTTA  900

seq1  CTTTTGGGACAACTGGATCAATCCTTTTCCCTCACATTCTGGTTCTCCTT  950
      |||||||||||||||||||||||||||||||||||| ||||||||||  |
seq2  CTTTTGGGACAACTGGATCAATCCTTTTCCCTCACA-TCTGGTTCTC--T  947

seq1  CAACCCTCGGGCTAAGGTTTGCAACTTATGAACTTGCTATTGCTTGGCCT  1000
      ||||||||||||||||| |||||   ||||||||||||||||||||||||
seq2  CAACCCTCGGGCTAAGG-TTGCA--CTATGAACTTGCTATTGCTTGGCCT  994

seq1  CCTAAGCAACAGGGAACTGGAGATG-TGAGCCCTATAGATCCGAGCTACT  1049
      |||||||||||  ||||| |||||| |||| |||||||||||||||||||
seq2  CCTAAGCAACA--GAACT-GAGATGTTGAG-CCTATAGATCCGAGCTACT  1040

seq1  CTCTCTCTC-CCCTACTCCCACCTTATCCTAAACAAAGAGGATCTGCTCT  1098
       || ||||| ||||||||||  | ||||||||||||   |||||||||||
seq2  -TCCCTCTCTCCCTACTCCCCACCTATCCTAAACAAGAGGGATCTGCTCT  1089

seq1  CTTTCACTCAGGCTCATGCC  1118
      ||||| ||||||||||||||
seq2  CTTTC-CTCAGGCTCATGCC  1108

seq1: chr8_96551771_96552868
seq2: B6Ng01-160K08.g_71_1158 (reverse)

seq1  CTTATAAGAGTTGCCTTGG-TCATAGTGACTCTTCACATCAATAAAACCT  49
      | |||||| |||||||||| |||||||||||| |||| || |||||  | 
seq2  CCTATAAGGGTTGCCTTGGTTCATAGTGACTC-TCACGTCCATAAA--CC  47

seq1  TAAGAGAGAGAGGGTCCCATTTTCAGCACCTGTGGTAACTAACAACCGTC  99
      |||||||||   ||||||| |||| ||| ||||||||||| |  ||||||
seq2  TAAGAGAGA---GGTCCCA-TTTCCGCA-CTGTGGTAACTTAACACCGTC  92

seq1  TTAACTATACTTCCTGGGACCCACTTCCTCCCTCCGACTCCCCAGGCATC  149
      || |||||||| ||| |||||||||   |||| | |||| |||  |||||
seq2  TT-ACTATACTCCCTTGGACCCACTAAATCCCACAGACTACCCCAGCATC  141

seq1  AGACA-TATATATATATACAGACACACACTCATACACAAGAAAGGAAAAA  198
      ||||| | | ||||||||||||||||||||||||||||||||  | ||||
seq2  AGACATTTTTTATATATACAGACACACACTCATACACAAGAA--GGAAAA  189

seq1  GCTGTTTGGTCTT-AAAAATGGTTTTTAAATCAAAATTAAGAAATGGGAA  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGGTCTTAAAAAATGGTTTTTAAATCAAAATTAAGAAATGGGAA  239

seq1  TAAGAAATGGGAAGCTAAGGTCTACTCTGATTATTTTTTCATTTTTTATT  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AGAAATGGGAAGCTAAGGTCTACTCTGATTATTTTTTCATTTTTTATT  288

seq1  TAAAAAATTTCCATTTATGGGGCTGGAGAAATGGCTCAGTAGTTAAGAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTTCCATTTATGGGGCTGGAGAAATGGCTCAGTAGTTAAGAAC  338

seq1  ACTGGCTGTTCTTCCAAAAGACCTCGGTTCAATTCCCAGCACCCCCAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGTTCTTCCAAAAGACCTCGGTTCAATTCCCAGCACCCCCAAAG  388

seq1  CAGCTCACAACTGTCTATAACTATAGTTTCAGAGTATCTGACACCTACAC  447
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGCTCACAACTGTCTATAACTATAG-TTCAGAGTATCTGACACCTACAC  437

seq1  AGACAAACATGCAGGCAAACTACCATTGACCACAAAACAAACAAAAACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACATGCAGGCAAACTACCATTGACCACAAAACAAACAAAAACAA  487

seq1  AAAGACATCTAATATTTCTTTTTAAAAAAAGGTGGTGGGAGGGTAATTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATCTAATATTTCTTTTTAAAAAAAGGTGGTGGGAGGGTAATTGA  537

seq1  AGAGATGGCTCAGCAGTTAGAGTCACTCACTGGCTGCTCTTTCAGAGGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGCAGTTAGAGTCACTCACTGGCTGCTCTTTCAGAGGAC  587

seq1  CCAGGTTCAATTCCTAGCATCCAAATGGCAGCTCGCTACCATATGTGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCAATTCCTAGCATCCAAATGGCAGCTCGCTACCATATGTGACT  637

seq1  CCAACCTCCAGAGATCCGACATCCTCTATGGCTTCCACAGGATACATACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCCAGAGATCCGACATCCTCTATGGCTTCCACAGGATACATACA  687

seq1  TTCAGGCAAAACACACATATACATAAAAATAAATACATCTTAAAAAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCAAAACACACATATACATAAAAATAAATACATCTTAAAAAAAAA  737

seq1  AAAAACGTTTTCACTTTGTGTGTGTGTGTGTGTGTGTAGATGCCACAACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGTTTTCACTTTGTGTGTGTGTGTGTGTGTGTAGATGCCACAACA  787

seq1  TTGTCCTATCCTTCTACCATGTGAGTTCCAGAGATCAAACTTGGGTCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTATCCTTCTACCATGTGAGTTCCAGAGATCAAACTTGGGTCATG  837

seq1  AGGCTTGGTAGCAAACCCACTGAGCCACCTTACTAGCCCTTAGTCACTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGTAGCAAACCCACTGAGCCACCTTACTAGCCCTTAGTCACTCT  887

seq1  TTAAATGTCTTGAATTAGTGACTTTTCTGCTTTACCAAATGCCTGGTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTCTTGAATTAGTGACTTTTCTGCTTTACCAAATGCCTGGTGAA  937

seq1  CACAACTGAATACTGACCTGAGGAGGTTCAAAATTTGGTCTCCACCAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGAATACTGACCTGAGGAGGTTCAAAATTTGGTCTCCACCAGTT  987

seq1  CCCAATGCAGTCATCAATGACCCAGTCTTGCAGGACTCCATCTTGACGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCAGTCATCAATGACCCAGTCTTGCAGGACTCCATCTTGACGAC  1037

seq1  CAAGTATCTGTGCAAAGTAATATAGTAATGAATACACACACCTGAGAATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCTGTGCAAAGTAATATAGTAATGAATACACACACCTGAGAATT  1087

seq1  C  1098
      |
seq2  C  1088