BAC Information

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BAC

Clone NameB6Ng01-160L15
Chromosome8 (Build37)
Map Location 82,494,646 - 82,641,750
singlet/doubletdoublet
Overlap geneHhip, LOC546075
Upstream geneEG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439
Downstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160L15.bB6Ng01-160L15.g
ACCDH954025DH954026
length1,1391,066
definitionDH954025|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L15, 5' end.DH954026|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,494,646 - 82,495,803)(82,640,683 - 82,641,750)
sequence
gaattccttagaaatgcaccatgtgcttgagttgcaactctctcactata
agaccatagagggatcctagctgggagaccactgttgttgagccatattc
ctgaggaggaagaggtgcgtgcactgtcagccagtgctgcacacttttat
gattctacagcttggattccagaggaatgaatgctatggttgagagtgtg
cacttatcatggtccaatgtcagtagtacaaaaattctttgttaaatcca
aacatggagagatggcaaatggaaaaccatcaagaaaaatgtctgtcaga
ctcttgcaattgaaagctagggcacatcatttctttaagaaaatctgaac
agaacacttgtagaaaatttattgaggcaagaaccaaagggtattgtcac
agagacctaaaggagtatatgcactagaagtcagatttgccaagaatgaa
gatcataagaatccatacatgtgaccagcttatatacagcctgggttggc
tgtgaaggagcaagctcttctccagggaggatggattaagagcacacact
gtagccttttaatcgcacagactctgatattcttgctatggtgaaagcac
tttacatgcatgaaatgctggaattttataagaactggctgctttcttgc
tttttcatctgatgggagtgactacatgttggcacaagtacacattgcta
cattagatccacagcacattgaaaggctgtttgctccttactccccttct
ttccaattaagttggtgaaaacgtaactttagtattttacaggacagggt
aaaggtgtctcatctagggtgatgtctatattataaaaataaaataaaaa
attataatatgtaacagaaacccagagcctattgttacacaaaatataca
atagaagcagcacattcatgaagactgctctttcaaataggttgtctgat
ttatcataaaatattgaaaacatctgaagactaagctgagtaatcagatg
ctctgtcaataaaaagctaagtgcacaacgtctgtattcagaatatttca
cagaaatggagatacaatcttacatcagctgcctgtcagaattcacaaga
gtgcacctgctctctcttattagaacctttaataaaata
gaattctttgttgaaataatgaaaatgattgaattgccatgaaaaacaaa
gtagctaagtattcaagtgcctagtcaggggatactcataagtagcctgt
gacatcaaggacaacttaaaagaccacagagggagccagcaaaattagtt
cttggaggtctccagcttgaggactgagttttgtcccctcgatgtgggag
ttctgagtggctcatcacactcaactagcagactgcctggctctgggatc
cttgacagaaggctaatgaacagccattgccacagagcacagcggcagct
cagctgcaatcttagccagacccagttataacagcccccacccccacccc
cacccccaccgcaggctcaacccctctcaaagtcctgtgaacctcctttg
ggcaagggaactagaaatcactcagcctgagagcaaggaggagcctgtgc
aaaccctttcaaagcccaacaaagctcacctcagagggtcgctctctggt
gagcttccctacctggagctcttcctgccttcccactgcttagacccaca
gggtgcataacaaagtctcctgacacttcattgttgagcccttcctcatc
cttgtgtggtgtggcaaatgtatttctcataaaatcagaggcttgggaga
gacactgagggttagtcacagtaaagccttccctattccagatactgaca
tttgaagtacagatctttattgctgtaagtccccatgacaaacatttcat
gaccttgagtagccaccctgtagtactgacagtaacatttttatcatctt
gatggagcctaggaatacagttttggctttaaaaagttagctaactgata
tgcaatatcttacaaagtcccttaaggaatggatcagcacgggaataaag
gacaaatgttaaatattctgtattctgaaggaggatgccttcaaacgatt
ggtgtttagcgtctaaaagcaaagtgatgtgaaatggttcaaggcgagaa
aggatgattttttgtggacttgttgtttaaacaaacaaacatttcgtggt
gtgatttcaatcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_82494646_82495803
seq2: B6Ng01-160L15.b_47_1185

seq1  GAATTCCTTAGAAATGCACCATGTGCTTGAGTTGCAACTCTCTCACTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGAAATGCACCATGTGCTTGAGTTGCAACTCTCTCACTATA  50

seq1  AGACCATAGAGGGATCCTAGCTGGGAGACCACTGTTGTTGAGCCATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAGAGGGATCCTAGCTGGGAGACCACTGTTGTTGAGCCATATTC  100

seq1  CTGAGGAGGAAGAGGTGCGTGCACTGTCAGCCAGTGCTGCACACTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGGAAGAGGTGCGTGCACTGTCAGCCAGTGCTGCACACTTTTAT  150

seq1  GATTCTACAGCTTGGATTCCAGAGGAATGAATGCTATGGTTGAGAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTACAGCTTGGATTCCAGAGGAATGAATGCTATGGTTGAGAGTGTG  200

seq1  CACTTATCATGGTCCAATGTCAGTAGTACAAAAATTCTTTGTTAAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCATGGTCCAATGTCAGTAGTACAAAAATTCTTTGTTAAATCCA  250

seq1  AACATGGAGAGATGGCAAATGGAAAACCATCAAGAAAAATGTCTGTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAGAGATGGCAAATGGAAAACCATCAAGAAAAATGTCTGTCAGA  300

seq1  CTCTTGCAATTGAAAGCTAGGGCACATCATTTCTTTAAGAAAATCTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAATTGAAAGCTAGGGCACATCATTTCTTTAAGAAAATCTGAAC  350

seq1  AGAACACTTGTAGAAAATTTATTGAGGCAAGAACCAAAGGGTATTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTGTAGAAAATTTATTGAGGCAAGAACCAAAGGGTATTGTCAC  400

seq1  AGAGACCTAAAGGAGTATATGCACTAGAAGTCAGATTTGCCAAGAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTAAAGGAGTATATGCACTAGAAGTCAGATTTGCCAAGAATGAA  450

seq1  GATCATAAGAATCCATACATGTGACCAGCTTATATACAGCCTGGGTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAAGAATCCATACATGTGACCAGCTTATATACAGCCTGGGTTGGC  500

seq1  TGTGAAGGAGCAAGCTCTTCTCCAGGGAGGATGGATTAAGAGCACACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGAGCAAGCTCTTCTCCAGGGAGGATGGATTAAGAGCACACACT  550

seq1  GTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGTGAAAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGTGAAAGCAC  600

seq1  TTTACATGCATGAAATGCTGGAATTTTATAAGAACTGGCTGCTTTCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGCATGAAATGCTGGAATTTTATAAGAACTGGCTGCTTTCTTGC  650

seq1  TTTTTCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTA  700

seq1  CATTAGATCCACAGCACATTG-AAGGCTGTTTGCTTCCTTACTCCCCTTC  749
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CATTAGATCCACAGCACATTGAAAGGCTGTTTGC-TCCTTACTCCCCTTC  749

seq1  TTTCCAATTAAGTTGGTGAAAACGTAACTTTAGTATTTTACAGGACAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTAAGTTGGTGAAAACGTAACTTTAGTATTTTACAGGACAGGG  799

seq1  TAAAGGTGTCTCATCTA-GGTGATGTCTATATTATAAAAATAAAATAAAA  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTCTCATCTAGGGTGATGTCTATATTATAAAAATAAAATAAAA  849

seq1  AATATAAATATGTAACAGAAACCCAGAGCCTATTGTTACACAAAATATAC  898
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATATGTAACAGAAACCCAGAGCCTATTGTTACACAAAATATAC  899

seq1  AATAGAAGCAGCACATTCATGAAGACTGCTCTTTCAAATAGGTTGTTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATAGAAGCAGCACATTCATGAAGACTGCTCTTTCAAATAGGTTG-TCTG  948

seq1  ATTTAATCATAAAATATTGGAAAACCATCTTGAGACTAAGCTGAAGTAAT  998
      |||| ||||||||||||||  ||| |||||  ||||||||||| ||||||
seq2  ATTT-ATCATAAAATATTG--AAAACATCTGAAGACTAAGCTG-AGTAAT  994

seq1  CAGATTGCTCTGTCAAATAAAAAGCTAAGTGCACAACGTTCTGTAATCAG  1048
      |||| ||||||||| ||||||||||||||||||||||| |||||| ||||
seq2  CAGA-TGCTCTGTC-AATAAAAAGCTAAGTGCACAACG-TCTGTATTCAG  1041

seq1  -ATATATCAACAGAAATGAAGATTACAATCTTACATCAAGCTGCTTGTTC  1097
       |||| || ||||||||| ||| |||||||||||||| |||||| || ||
seq2  AATATTTC-ACAGAAATGGAGA-TACAATCTTACATC-AGCTGCCTG-TC  1087

seq1  AGAAATTCACCAAGGAGTTTGGAAACATG--CTCTCTTATTATAGACCTT  1145
      || |||||||  | ||||      || ||  ||||||||||| | |||||
seq2  AG-AATTCAC--AAGAGT----GCACCTGCTCTCTCTTATTAGA-ACCTT  1129

seq1  TAATATAAAAATA  1158
      ||||   ||||||
seq2  TAAT---AAAATA  1139

seq1: chr8_82640683_82641750
seq2: B6Ng01-160L15.g_68_1133 (reverse)

seq1  TGAAGATAGAAATCACA-CAGGAAATGTTTTGTTTTGTTTTAAACAAC-A  48
      ||||||| ||||||||| || |||||| |||||||   |||||||||| |
seq2  TGAAGATTGAAATCACACCACGAAATG-TTTGTTT--GTTTAAACAACAA  47

seq1  GTCCACAAAAATTCATTCTTTCCTCGCTTTGAACCATTTCACACTACTTT  98
      ||||||||||| |||| |||| ||||| |||||||||||||||  |||||
seq2  GTCCACAAAAAATCATCCTTT-CTCGCCTTGAACCATTTCACATCACTTT  96

seq1  GCTTTTAGACGCTAAACACCAATCGTTTGAAGGCATTCTCCTTCAAGAAT  148
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  GCTTTTAGACGCTAAACACCAATCGTTTGAAGGCATCCTCCTTC-AGAAT  145

seq1  ACAGAATATTTAAACATTTTGTCTTTATTCCCGTGCTGATCCATTCCTTA  198
      ||||||||||| |||||||   ||||||||||||||||||||||||||||
seq2  ACAGAATATTT-AACATTTGTCCTTTATTCCCGTGCTGATCCATTCCTTA  194

seq1  AGGGACTTTGTAAGATATTGCATATCAGTTAGCTAACTTTTTAAAGCCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTTGTAAGATATTGCATATCAGTTAGCTAACTTTTTAAAGCCAA  244

seq1  AACTGTA-TCCTAGGCTCCATCAAGATGATAAAAATGTTACTGTCAGTAC  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATTCCTAGGCTCCATCAAGATGATAAAAATGTTACTGTCAGTAC  294

seq1  TACA-GGTGGCTACTCAAGGTCATGAAATGTTTGTCATGGGGACTTACAG  346
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTGGCTACTCAAGGTCATGAAATGTTTGTCATGGGGACTTACAG  344

seq1  CAATAAAGATCTGTACTTCAAATGTCAGTATCTGGAATAGGGAAGGCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGATCTGTACTTCAAATGTCAGTATCTGGAATAGGGAAGGCTTT  394

seq1  ACTGTGACTAACCCTCAGTGTCTCTCCCAAGCCTCTGATTTTATGAGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTAACCCTCAGTGTCTCTCCCAAGCCTCTGATTTTATGAGAAA  444

seq1  TACATTTGCCACACCACACAAGGATGAGGAAGGGCTCAACAATGAAGTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGCCACACCACACAAGGATGAGGAAGGGCTCAACAATGAAGTGT  494

seq1  CAGGAGACTTTGTTATGCACCCTGTGGGTCTAAGCAGTGGGAAGGCAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACTTTGTTATGCACCCTGTGGGTCTAAGCAGTGGGAAGGCAGGA  544

seq1  AGAGCTCCAGGTAGGGAAGCTCACCAGAGAGCGACCCTCTGAGGTGAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCAGGTAGGGAAGCTCACCAGAGAGCGACCCTCTGAGGTGAGCT  594

seq1  TTGTTGGGCTTTGAAAGGGTTTGCACAGGCTCCTCCTTGCTCTCAGGCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGCTTTGAAAGGGTTTGCACAGGCTCCTCCTTGCTCTCAGGCTG  644

seq1  AGTGATTTCTAGTTCCCTTGCCCAAAGGAGGTTCACAGGACTTTGAGAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTCTAGTTCCCTTGCCCAAAGGAGGTTCACAGGACTTTGAGAGG  694

seq1  GGTTGAGCCTGCGGTGGGGGTGGGGGTGGGGGTGGGGGCTGTTATAACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGCCTGCGGTGGGGGTGGGGGTGGGGGTGGGGGCTGTTATAACTG  744

seq1  GGTCTGGCTAAGATTGCAGCTGAGCTGCCGCTGTGCTCTGTGGCAATGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCTAAGATTGCAGCTGAGCTGCCGCTGTGCTCTGTGGCAATGGC  794

seq1  TGTTCATTAGCCTTCTGTCAAGGATCCCAGAGCCAGGCAGTCTGCTAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTAGCCTTCTGTCAAGGATCCCAGAGCCAGGCAGTCTGCTAGTT  844

seq1  GAGTGTGATGAGCCACTCAGAACTCCCACATCGAGGGGACAAAACTCAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGATGAGCCACTCAGAACTCCCACATCGAGGGGACAAAACTCAGT  894

seq1  CCTCAAGCTGGAGACCTCCAAGAACTAATTTTGCTGGCTCCCTCTGTGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGCTGGAGACCTCCAAGAACTAATTTTGCTGGCTCCCTCTGTGGT  944

seq1  CTTTTAAGTTGTCCTTGATGTCACAGGCTACTTATGAGTATCCCCTGACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGTTGTCCTTGATGTCACAGGCTACTTATGAGTATCCCCTGACT  994

seq1  AGGCACTTGAATACTTAGCTACTTTGTTTTTCATGGCAATTCAATCATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTGAATACTTAGCTACTTTGTTTTTCATGGCAATTCAATCATTT  1044

seq1  TCATTATTTCAACAAAGAATTC  1068
      ||||||||||||||||||||||
seq2  TCATTATTTCAACAAAGAATTC  1066