BAC Information

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BAC

Clone NameB6Ng01-161L12
Chromosome8 (Build37)
Map Location 97,077,183 - 97,228,867
singlet/doubletdoublet
Overlap geneCpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp
Upstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557
Downstream geneCcl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161L12.bB6Ng01-161L12.g
ACCDH954755DH954756
length8921,015
definitionDH954755|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L12, 5' end.DH954756|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,227,978 - 97,228,867)(97,077,183 - 97,078,201)
sequence
gaattcactatgtagactagaactcacacagagatcaacctgcttctgcc
tcctgagtgatgagattaaaagcacgtatggctcttagtcgttatttttt
tgtttgtttttatttaccatcgttattattgtgggcacggtatgccatcc
ttatttatacctttggaaataacatgaggaacagcttcttttgggctgag
gttttctgtttccgtgagcaagtctgaggtttgagaagggggcgagaagg
aacagaaaaaggcaaggggcggagaggagcgatgagtcacgaaataactg
aaagcgagacggcgcggggatagggggcatctgacctgcatactattgtg
tgtcaggcactgtgtgggcactgaagacacggccaaaacccggatcagac
cgtgtcgctgcgggattcatctaagctagagtctgaaacaaaccagtaac
cctgcaaatgggtcgctgaggttttgatcacctttaggcaaggggaccag
gattttatgacgtcaaccgggtcagggtagcaaaggctaagcaccgttag
ctgccgcgaatatacggacctgattgccacgtaccataaagacacgaagg
tggggatgcaaaaaaaaaaaaaaaaaaaaaaagcaaggatgctggcagat
ccgcaggaaacaaggatgaagggcacagtttctgcattcatttaaaagaa
actgcaggtctggcgccttctgagttttctagcgagtggcgagtgccacc
tgccggtcattcgtagtattacatatggtgcttgctccgcccagtgcaaa
aaatcccagaagctacttcattacgcatgcgcacattgagaggcttacaa
agaggactgactaggcgctctgtttccagtttgtcaaggatg
gaattccatcctggaatggtggggaagggaaggagcagacacccccaccc
ccacgccccgtcaccccactcccacccccaccccttctcacagccacgac
ctttcagattgcagcccaagagctgtcagacaaccgagtcatcacactga
gcctggctggcaggaaactggataagaaggtaagccaggcagagaggggc
ttccatgaacaacagggtttcccaccacagagccctggggctcggtctct
ggctccatcattttcatttcctgacacgggtcgggccaagcactgaacca
ctcaagtcagactttcgccaactctcggggggaagtgtcctgccacttag
agggaggcagcttgagaccggaaactttcttgtggcccccttctccccac
agggctccactgtgaccctccagagtccttccccctcatcccctttggcc
accaggttagaccagaccctcttgctctcctcagctgtattaatgttctc
attttcaagtgctgaggacgggacccaggactctgctgtggagtcacaat
accgggtgccggggataaaccaggcatcttccagtctcagacccactgcc
ctctcttctcaccacctgggacccctacagtgaacattgtcactgtgtcc
ttcccacattctgtccttctacaacccttccctggagacacagtggcagt
gcccctcggttgcctgtggtcactcatgctgctgtcccgtacattcttcc
ttgacccgctctgtccccttcacttctgtgtaacatcttagatgtctttt
ttttttttaatgaacattaaggatattctagaggcaacctgccctttggt
gattggcaccctaaaattttttattcatttacttttggaagggtccgaga
acattatggacatatgtctagaaacgcttattgtagttccgcttctctcc
tttcaacctgggggtctggggggagcaaattcaggcctcgggctgatggc
aagacaccttacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97227978_97228867
seq2: B6Ng01-161L12.b_46_937 (reverse)

seq1  CATCC-TGAC-AACTGGAAACAGAGCGCCTAGTCAGTCCTCTTTGTAAGC  48
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGACAAACTGGAAACAGAGCGCCTAGTCAGTCCTCTTTGTAAGC  50

seq1  CTCTCAATGTGCGCATGCGTAATGAAGTAGCTTCTGGGATTTTTTGCACT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATGTGCGCATGCGTAATGAAGTAGCTTCTGGGATTTTTTGCACT  100

seq1  GGGCGGAGCAAGCACCCTATGTAATACTACGAATGACCGGCAGGTGGCAC  148
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCGGAGCAAGCACCATATGTAATACTACGAATGACCGGCAGGTGGCAC  150

seq1  TCGCCACTCGCTAGAAAACTCAGAAGGCGCCAGACCTGCAGTTTCTTTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACTCGCTAGAAAACTCAGAAGGCGCCAGACCTGCAGTTTCTTTTA  200

seq1  AATGAATGCAGAAACTGTGCCCTTCATCCTTGTTTCCTGCGGATCTGCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCAGAAACTGTGCCCTTCATCCTTGTTTCCTGCGGATCTGCCA  250

seq1  GCATCCTTGCTTTTTTTTTTTTTTTTTTTTTTTGCATCCCCACCTTCGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGCTTTTTTTTTTTTTTTTTTTTTTTGCATCCCCACCTTCGTG  300

seq1  TCTTTATGGTACGTGGCAATCAGGTCCGTATATTCGCGGCAGCTAACGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGGTACGTGGCAATCAGGTCCGTATATTCGCGGCAGCTAACGGT  350

seq1  GCTTAGCCTTTGCTACCCTGACCCGGTTGACGTCATAAAATCCTGGTCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCCTTTGCTACCCTGACCCGGTTGACGTCATAAAATCCTGGTCCC  400

seq1  CTTGCCTAAAGGTGATCAAAACCTCAGCGACCCATTTGCAGGGTTACTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTAAAGGTGATCAAAACCTCAGCGACCCATTTGCAGGGTTACTGG  450

seq1  TTTGTTTCAGACTCTAGCTTAGATGAATCCCGCAGCGACACGGTCTGATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCAGACTCTAGCTTAGATGAATCCCGCAGCGACACGGTCTGATC  500

seq1  CGGGTTTTGGCCGTGTCTTCAGTGCCCACACAGTGCCTGACACACAATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTTGGCCGTGTCTTCAGTGCCCACACAGTGCCTGACACACAATAG  550

seq1  TATGCAGGTCAGATGCCCCCTATCCCCGCGCCGTCTCGCTTTCAGTTATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGTCAGATGCCCCCTATCCCCGCGCCGTCTCGCTTTCAGTTATT  600

seq1  TCGTGACTCATCGCTCCTCTCCGCCCCTTGCCTTTTTCTGTTCCTTCTCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGACTCATCGCTCCTCTCCGCCCCTTGCCTTTTTCTGTTCCTTCTCG  650

seq1  CCCCCTTCTCAAACCTCAGACTTGCTCACGGAAACAGAAAACCTCAGCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCTCAAACCTCAGACTTGCTCACGGAAACAGAAAACCTCAGCCC  700

seq1  AAAAGAAGCTGTTCCTCATGTTATTTCCAAAGGTATAAATAAGGATGGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCTGTTCCTCATGTTATTTCCAAAGGTATAAATAAGGATGGCA  750

seq1  TACCGTGCCCACAATAATAACGATGGTAAATAAAAACAAACAAAAAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTGCCCACAATAATAACGATGGTAAATAAAAACAAACAAAAAAATA  800

seq1  ACGACTAAGAGCCATACGTGCTTTTAATCTCATCACTCAGGAGGCAGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTAAGAGCCATACGTGCTTTTAATCTCATCACTCAGGAGGCAGAAG  850

seq1  CAGGTTGATCTCTGTGTGAGTTCTAGTCTACATAGTGAATTC  890
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGATCTCTGTGTGAGTTCTAGTCTACATAGTGAATTC  892

seq1: chr8_97077183_97078201
seq2: B6Ng01-161L12.g_70_1084

seq1  GAATTCCATCCTGGAATGGTGGGGAAGGGAAGGAGCAGACACCCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTGGAATGGTGGGGAAGGGAAGGAGCAGACACCCCCACCC  50

seq1  CCACGCCCCGTCACCCCACTCCCACCCCCACCCCTTCTCACAGCCACGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCCGTCACCCCACTCCCACCCCCACCCCTTCTCACAGCCACGAC  100

seq1  CTTTCAGATTGCAGCCCAAGAGCTGTCAGACAACCGAGTCATCACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATTGCAGCCCAAGAGCTGTCAGACAACCGAGTCATCACACTGA  150

seq1  GCCTGGCTGGCAGGAAACTGGATAAGAAGGTAAGCCAGGCAGAGAGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTGGCAGGAAACTGGATAAGAAGGTAAGCCAGGCAGAGAGGGGC  200

seq1  TTCCATGAACAACAGGGTTTCCCACCACAGAGCCCTGGGGCTCGGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAACAACAGGGTTTCCCACCACAGAGCCCTGGGGCTCGGTCTCT  250

seq1  GGCTCCATCATTTTCATTTCCTGACACGGGTCGGGCCAAGCACTGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATCATTTTCATTTCCTGACACGGGTCGGGCCAAGCACTGAACCA  300

seq1  CTCAAGTCAGACTTTCGCCAACTCTCGGGGGGAAGTGTCCTGCCACTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCAGACTTTCGCCAACTCTCGGGGGGAAGTGTCCTGCCACTTAG  350

seq1  AGGGAGGCAGCTTGAGACCGGAAACTTTCTTGTGGCCCCCTTCTCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCAGCTTGAGACCGGAAACTTTCTTGTGGCCCCCTTCTCCCCAC  400

seq1  AGGGCTCCACTGTGACCCTCCAGAGTCCTTCCCCCTCATCCCCTTTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCACTGTGACCCTCCAGAGTCCTTCCCCCTCATCCCCTTTGGCC  450

seq1  ACCAGGTTAGACCAGACCCTCTTGCTCTCCTCAGCTGTATTAATGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTAGACCAGACCCTCTTGCTCTCCTCAGCTGTATTAATGTTCTC  500

seq1  ATTTTCAAGTGCTGAGGACGGGACCCAGGACTCTGCTGTGGAGTCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGTGCTGAGGACGGGACCCAGGACTCTGCTGTGGAGTCACAAT  550

seq1  ACCGGGTGCCGGGGATAAACCAGGCATCTTCCAGTCTCAGACCCACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTGCCGGGGATAAACCAGGCATCTTCCAGTCTCAGACCCACTGCC  600

seq1  CTCTCTTCTCACCACCTGGGACCCCTACAGTGAACATTGTCACTGTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCACCACCTGGGACCCCTACAGTGAACATTGTCACTGTGTCC  650

seq1  TTCCCACATTCTGTCCTTCTACAACCCTTCCCTGGAGACACAGTGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACATTCTGTCCTTCTACAACCCTTCCCTGGAGACACAGTGGCAGT  700

seq1  GCCCCTCGGTTGCCTGTGGTCACTCATGCTGCTGTCCCGTACATTCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCGGTTGCCTGTGGTCACTCATGCTGCTGTCCCGTACATTCTTCC  750

seq1  TTGACCCGCTCTGTCCCCTTCACTTCTGTGTAACATCTTTAGATGTCTTT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TTGACCCGCTCTGTCCCCTTCACTTCTGTGTAACATC-TTAGATGTC-TT  798

seq1  TTTTTTTTTTAATGTACATTAATGAATTTCTAGAGGCCACCATGCCCTTT  850
      |||||||||||||| ||||||| ||  |||||||||| ||| ||||||||
seq2  TTTTTTTTTTAATGAACATTAAGGATATTCTAGAGGCAACC-TGCCCTTT  847

seq1  GGTGACTGGCACCATAGATTTATTTATTCA-TTACCTTTGGAGGGGTCCG  899
      ||||| ||||||| || | || |||||||| |||| |||||| |||||||
seq2  GGTGATTGGCACCCTAAAATTTTTTATTCATTTACTTTTGGAAGGGTCCG  897

seq1  AG-ACACTATGGGACATATGGTCAGAGAACAGCTTA-TGTAG-TCCGCTC  946
      || ||| ||| |||||||| |||  ||||  ||||| ||||| |||||| 
seq2  AGAACATTAT-GGACATAT-GTC-TAGAAACGCTTATTGTAGTTCCGCT-  943

seq1  TCT-TCCTTCCACCATGTGGGTTCTGGGGGAGCAAATTCAAGCCCTCGGG  995
      ||| ||||| || | || ||||   |||||||||||||| || |||||||
seq2  TCTCTCCTTTCAACCTGGGGGTCTGGGGGGAGCAAATTC-AGGCCTCGGG  992

seq1  CTTGATGGCAAAGAC-CCTTACCTG  1019
      | ||||||| ||||| |||||||||
seq2  C-TGATGGC-AAGACACCTTACCTG  1015