BAC Information

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BAC

Clone NameB6Ng01-161M18
Chromosome8 (Build37)
Map Location 22,675,020 - 22,850,889
singlet/doubletdoublet
Overlap geneLOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890
Downstream geneLOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M18.bB6Ng01-161M18.g
ACCDH954811DH954812
length1,103936
definitionDH954811|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M18, 5' end.DH954812|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,675,020 - 22,676,134)(22,849,946 - 22,850,889)
sequence
gaattctgtaccttttgttgtgtatgtagtgtgagaaatgggatgaaaca
catagagaacagtggtcatgtatggcgtgatgacacttcttaagataggg
tactagcttatggccctctctacattacatctcttgtagatcagtactca
ttttctgaaagtaaaaaaattgcagaatctcagacatgtggaatgacgca
tggcttgagagtcccaagtatggagatgctcctggaccacactcttgtga
gatgtgttcagacactttggcttctacagaacatctcactctagctacat
tcttacaaactctgtctcttaaactcaattcactgggggcacaatgaggc
catcttactttctctataatggccccaagtagggagttcacaatgttacc
tcacaggaggatgattgataatacctgaatcatgcaaagaactgactctc
cagtccacctagtcaaactctgctccagactacctgaggagagcatcctg
caagttcaaaacataaaaatcctttgttccatgagctttataaattacaa
agtgcctacctctttacttccctgaccactgagaggtaaatactcaagca
gatgggaaacacgggaagatagcaaggccccttcataattaataatggaa
gggctgatgtcactgaacacacactgcaacatcatgatagtagccttcag
aacagaggaacatcaaagggatcttgatgataacagactctcccagttcc
cagcaaagagtaccttctctaagtgtagacctttctctgccctataaatg
caggttggctactcactctccacacattaggcttctgctcaccaattctc
caggtgacccccagccatgaagacatttgtcctcctctctgcccttgtcc
tgctggctaccaggtccagctgatcctatccacaaacagatgagagacta
tactgaggagcagccaggggagagaccagctgttgtctatcttcttttga
ggccaagaaggtctgctcttcatgaagatgtggagtagtgtacccgcttg
atgatgcttgcagtctctcttgaaggaggatgagatgactctagaatcct
ggt
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctggggtccaccttcttgagttctttatatatattggatattagtcccc
tatctggtttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgcaactttat
gaggtcccatttattgattcttgatcttacagcacaagccattgctgttc
tattcaggaattttccccctgtacccatgtcttcgaggctttggggaaaa
tattttggtttctaatgtttacaaacatccttcatcaaaacccactctac
ttcagacaggttgctgatgatccctccctcctgagccatgatggatgggt
gtcctctgcatacctgttcttagctctcggcttcttcctgaaaccagcac
tgactaggcaaccatgctggagaggttttctgtaataaactccctaaatc
ctagagatccactcatctctgtgcccatggtactgaccaatgtccaaata
gaaattatgagttagaacgcattatgtgtgttgtttgaattccacttctt
ctggtaatgatatcttacagggcggtaggagagcagagcatgttcatgta
catatacagtgagagaatgtgtgagttgtgtggatcagcttgaatatcaa
cctttgctttgtcaatgcattgatgaagtcgggacttcatcttttcacct
agttctcaataatgagtctgtaaacttgtcctagatcagtgacataaaat
tctgcactatttggtatgcttggatgaacaacttctcattctttataata
tccagtttcctacatgatatgcagattagtgttgcacccagtggggttca
gttctcttgtcatggggaggatcagtgggtgggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_22675020_22676134
seq2: B6Ng01-161M18.b_48_1150

seq1  GAATTCTGTACCTTTTGTTGTGTATGTAGTGTGAGAAATGGGATGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACCTTTTGTTGTGTATGTAGTGTGAGAAATGGGATGAAACA  50

seq1  CATAGAGAACAGTGGTCATGTATGGCGTGATGACACTTCTTAAGATAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAACAGTGGTCATGTATGGCGTGATGACACTTCTTAAGATAGGG  100

seq1  TACTAGCTTATGGCCCTCTCTACATTACATCTCTTGTAGATCAGTACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTTATGGCCCTCTCTACATTACATCTCTTGTAGATCAGTACTCA  150

seq1  TTTTCTGAAAGTAAAAAAATTGCAGAATCTCAGACATGTGGAATGACGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAAGTAAAAAAATTGCAGAATCTCAGACATGTGGAATGACGCA  200

seq1  TGGCTTGAGAGTCCCAAGTATGGAGATGCTCCTGGACCACACTCTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAGAGTCCCAAGTATGGAGATGCTCCTGGACCACACTCTTGTGA  250

seq1  GATGTGTTCAGACACTTTGGCTTCTACAGAACATCTCACTCTAGCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTCAGACACTTTGGCTTCTACAGAACATCTCACTCTAGCTACAT  300

seq1  TCTTACAAACTCTGTCTCTTAAACTCAATTCACTGGGGGCACAATGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAAACTCTGTCTCTTAAACTCAATTCACTGGGGGCACAATGAGGC  350

seq1  CATCTTACTTTCTCTATAATGGCCCCAAGTAGGGAGTTCACAATGTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACTTTCTCTATAATGGCCCCAAGTAGGGAGTTCACAATGTTACC  400

seq1  TCACAGGAGGATGATTGATAATACCTGAATCATGCAAAGAACTGACTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGAGGATGATTGATAATACCTGAATCATGCAAAGAACTGACTCTC  450

seq1  CAGTCCACCTAGTCAAACTCTGCTCCAGACTACCTGAGGAGAGCATCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACCTAGTCAAACTCTGCTCCAGACTACCTGAGGAGAGCATCCTG  500

seq1  CAAGTTCAAAACATAAAAATCCTTTGTTCCATGAGCTTTATAAATTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAAAACATAAAAATCCTTTGTTCCATGAGCTTTATAAATTACAA  550

seq1  AGTGCCTACCTCTTTACTTCCCTGACCACTGAGAGGTAAATACTCAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTACCTCTTTACTTCCCTGACCACTGAGAGGTAAATACTCAAGCA  600

seq1  GATGGGAAACACGGGAAGATAGCAAGGCCCCTTCATAATTAATAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAACACGGGAAGATAGCAAGGCCCCTTCATAATTAATAATGGAA  650

seq1  GGGCTGATGTCACTGAACACACACTGCAACATCATGATAGTAGCCTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGATGTCACTGAACACACACTGCAACATCATGATAGTAGCCTTCAG  700

seq1  AACAGAGGAACATCAAAGGGATCTTGATGATAACAGACTCTCCCAGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAACATCAAAGGGATCTTGATGATAACAGACTCTCCCAGTTCC  750

seq1  CAGCAAAGAGTACCTTCTCTAAGTGTAGACCTTTCTCTGCCCTATAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGAGTACCTTCTCTAAGTGTAGACCTTTCTCTGCCCTATAAATG  800

seq1  CAGGTTGGCTACTCACTCTCCACACATTAGGCTTCTGCTCACCAATTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGCTACTCACTCTCCACACATTAGGCTTCTGCTCACCAATTCTC  850

seq1  CAGGTGACCCCCAGCCATGAAGACATTTGTCCTCCTCTCTGCCCTTGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACCCCCAGCCATGAAGACATTTGTCCTCCTCTCTGCCCTTGTCC  900

seq1  TGCTGGCCTACCAGGTCCAGGCTGATCCTATCCACAAAACAGATGAAGAG  950
      |||||| |||||||||||| ||||||||||||||| ||||||||| ||||
seq2  TGCTGG-CTACCAGGTCCA-GCTGATCCTATCCAC-AAACAGATG-AGAG  946

seq1  ACTAATACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTG-TGTCTATCT  999
      ||| ||||||||||||||||||||| ||| ||||| |||| |||||||||
seq2  ACT-ATACTGAGGAGCAGCCAGGGG-AGA-GACCA-GCTGTTGTCTATCT  992

seq1  CTTTTGGAGGCCAAGAAGGGTCTGCTCTTCATGAAGAATGT-GAGTAGTG  1048
        ||| ||||||||||| |||||||||||||||||| |||| ||||||| 
seq2  TCTTTTGAGGCCAAGAA-GGTCTGCTCTTCATGAAG-ATGTGGAGTAGT-  1039

seq1  GTACCCAGTGTGATGGATGCTTGCAG--TCTCCTGAGGGAGGGATGAAGA  1096
      |||||| |  |||| |||||||||||  |||| ||| ||| ||||| |||
seq2  GTACCC-GCTTGAT-GATGCTTGCAGTCTCTCTTGAAGGA-GGATG-AGA  1085

seq1  TGAGCTCTAGAATCCTGGT  1115
      ||| |||||||||||||||
seq2  TGA-CTCTAGAATCCTGGT  1103

seq1: chr8_22849946_22850889
seq2: B6Ng01-161M18.g_72_1007 (reverse)

seq1  CAGCCCCAACCCACTATATCCCTCCCCATGGACAGAGAACTGAACCCCAC  50
      ||||||  |||||||  || ||||||||||   |||||||||||||||||
seq2  CAGCCC--ACCCACT-GAT-CCTCCCCATGACAAGAGAACTGAACCCCAC  46

seq1  TTGGGTTGCACACTAATCCTGCATATTCATTGTAGGAAACTGGATA-TAT  99
       |||||   |||||||| ||||||| ||| |||||||||||||||| |||
seq2  -TGGGTGCAACACTAAT-CTGCATA-TCA-TGTAGGAAACTGGATATTAT  92

seq1  AAAGAATGAGAAGTTGTTCATCCAAGCATACCAAATAGTGCAGAATTTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAGAAGTTGTTCATCCAAGCATACCAAATAGTGCAGAATTTTA  142

seq1  TGTCACTGATCTAGGACAAGTTTACAGACTCATTATTGAGAACCTAGGTG  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTCACTGATCTAGGACAAGTTTACAGACTCATTATTGAGAA-CTAGGTG  191

seq1  AAAAGATGAAGTCCCGACTTCATCAATGCATTGACAAAGCAAAGGTTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGAAGTCCCGACTTCATCAATGCATTGACAAAGCAAAGGTTGAT  241

seq1  ATTCAAGCTGATCCACACAACTCACACATTCTCTCACTGTATATGTACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCTGATCCACACAACTCACACATTCTCTCACTGTATATGTACAT  291

seq1  GAACATGCTCTGCTCTCCTACCGCCCTGTAAGATATCATTACCAGAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCTCTGCTCTCCTACCGCCCTGTAAGATATCATTACCAGAAGAA  341

seq1  GTGGAATTCAAACAACACACATAATGCGTTCTAACTCATAATTTCTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTCAAACAACACACATAATGCGTTCTAACTCATAATTTCTATTT  391

seq1  GGACATTGGTCAGTACCATGGGCACAGAGATGAGTGGATCTCTAGGATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGGTCAGTACCATGGGCACAGAGATGAGTGGATCTCTAGGATTT  441

seq1  AGGGAGTTTATTACAGAAAACCTCTCCAGCATGGTTGCCTAGTCAGTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTTATTACAGAAAACCTCTCCAGCATGGTTGCCTAGTCAGTGCT  491

seq1  GGTTTCAGGAAGAAGCCGAGAGCTAAGAACAGGTATGCAGAGGACACCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGGAAGAAGCCGAGAGCTAAGAACAGGTATGCAGAGGACACCCA  541

seq1  TCCATCATGGCTCAGGAGGGAGGGATCATCAGCAACCTGTCTGAAGTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATGGCTCAGGAGGGAGGGATCATCAGCAACCTGTCTGAAGTAGA  591

seq1  GTGGGTTTTGATGAAGGATGTTTGTAAACATTAGAAACCAAAATATTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTTGATGAAGGATGTTTGTAAACATTAGAAACCAAAATATTTTC  641

seq1  CCCAAAGCCTCGAAGACATGGGTACAGGGGGAAAATTCCTGAATAGAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCCTCGAAGACATGGGTACAGGGGGAAAATTCCTGAATAGAACA  691

seq1  GCAATGGCTTGTGCTGTAAGATCAAGAATCAATAAATGGGACCTCATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTTGTGCTGTAAGATCAAGAATCAATAAATGGGACCTCATAAA  741

seq1  GTTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGAC  791

seq1  CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAACCAGATAGGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAACCAGATAGGGGA  841

seq1  CTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACCCCAGAAAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACCCCAGAAAATC  891

seq1  AAATAACCCCATTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCCCATTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  936