BAC Information

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BAC

Clone NameB6Ng01-162C06
Chromosome8 (Build37)
Map Location 33,915,330 - 33,916,458
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C06.bB6Ng01-162C06.g
ACCDH955054DH955055
length1,1601,122
definitionDH955054|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C06, 5' end.DH955055|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccagagcagacatgagtaccatgaaaatttatgacagatttgga
aacctacacatgagtctttcaacgtttgttgagctgatttccagaattcc
tagggactagtggtttatttgagccttataattctaactctctgaatatt
aatatttatatgtctatagatatttctgtgtccttcttaatcattgtatg
tgggtgtggaggcagataatatgtctccttcattttacacactgacaaag
atagggagccttcatgaacacctgggcttgatttagataagattctagaa
tttatacagagtctgtcatgggatgagacttaggatctatggaggtggta
agaatgttttctccagggaagaccatgagtcaatgggatgagaatgtatc
ctgcagatagaatgttggatgctccagtgacctttgcatctcagtgtgta
tgctactatggattcacttcctcttgagtagagatgaaaacactattttt
gatggatattattccataaatattattaccgttgttatcctatcttgtga
agagagcctctctcctctggctttgaagaagcaagctaccatatcataag
ctgccatgaagaggtcagcatggagggaaactgatggtaacgtctggaaa
atagttgattggagattgaggtctagcctctcacaaggaacccaacaatc
acacgagtaaaaatgcacatctattcctactctacccttagatgagaatg
aaatgtcggacagttccttcctttcagtagatggtccagttaagcaatgc
tcagactcctgacctatggactctgtgaatgtaaaagagtaaatgtgcat
cttcttagggtagaaagtttggggcaatattgctacacgatcataactgc
atcctgtaaagtttggtcctggaacctgaagggaatggtgagggcataaa
gaaaggacagacatacagaaacatgtgtgcaaagccgggtcgggtgtgct
ttgctttgtctgctggaatggcaccacaacaggacacccagatctagtgt
gtcctctgcatgttattatgtacacttggggtggggtagggaggtactct
agtctttgtagtaaggagtcatcctgctgtgacatacatgaggagagctg
catcgcgtgg
gaattcagattacagacagggacagatgcatgtgaaggggtgagcaaagc
agtccattagcagcaagcctctgcagaactaaggagaaaacaggtaaaga
gaaaggcttgaataatatacccagttcataaacactgatgccaatttaag
tctcaaagcagaaatccccaattagttccatactggtttcagatcctgct
cagtttacagttgaattatatcttgctaaaaccatcacatatctctaata
tcaaataatgaaagtacattctgtacatctaacctatcaccatcattgct
cagcatgcacactcagcacactgtagaatgtcagttattcactctcctta
tctcagagctgacttggagctccatttgctgctgcccagcatcagagtat
actgtactcactatggctagcctaatgaaaagatccccattcaaattcaa
accatctcttctactgagtgcatggtgctttcatagcagtgaaacaggtt
gagccatctcaagccagagacaacattactaaatggggttgtgggtgaca
gaggtgatgtcatcctctttcactcttagacttcttgtccatggtggtcc
atactatataagaaatggaggaagaatgaggagataaatcacagaaaaga
tgaaacatctgctcaaaatgttgtcattctttcataaaacaagtgaaaca
tctaactttctgaaaagaaaaccaggatgtaataaaaatgaacagaaagt
ctttaagcatgagcgactataagttgtaagggggaaaatcacccacatga
tgataaaaataaaaatacaagatcaaaatattgatggaaaacagagcaag
attcctgaaatctaacaaataaactgaagtgaatgagtgggaaagaaata
cagactagataacagacatagccaacagtaaatgaagacagaacacagag
atagcacactcgtgacctgtgttacagcctgtagctgtgcctctcagatt
cacatgtcaactctaccctccagtcatgatgatcatctaagacatgatta
gtgaggctttaaaagattacccagagagagttcatccgcccctttcttct
gggtcaagacacagacaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_33915330_33916458
seq2: B6Ng01-162C06.g_69_1190

seq1  GAATTCAGATTACAGACAGGGACAGATGCATGTGAAGGGGTGAGCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTACAGACAGGGACAGATGCATGTGAAGGGGTGAGCAAAGC  50

seq1  AGTCCATTAGCAGCAAGCCTCTGCAGAACTAAGGAGAAAACAGGTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATTAGCAGCAAGCCTCTGCAGAACTAAGGAGAAAACAGGTAAAGA  100

seq1  GAAAGGCTTGAATAATATACCCAGTTCATAAACACTGATGCCAATTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTGAATAATATACCCAGTTCATAAACACTGATGCCAATTTAAG  150

seq1  TCTCAAAGCAGAAATCCCCAATTAGTTCCATACTGGTTTCAGATCCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGCAGAAATCCCCAATTAGTTCCATACTGGTTTCAGATCCTGCT  200

seq1  CAGTTTACAGTTGAATTATATCTTGCTAAAACCATCACATATCTCTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACAGTTGAATTATATCTTGCTAAAACCATCACATATCTCTAATA  250

seq1  TCAAATAATGAAAGTACATTCTGTACATCTAACCTATCACCATCATTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAATGAAAGTACATTCTGTACATCTAACCTATCACCATCATTGCT  300

seq1  CAGCATGCACACTCAGCACACTGTAGAATGTCAGTTATTCACTCTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCACACTCAGCACACTGTAGAATGTCAGTTATTCACTCTCCTTA  350

seq1  TCTCAGAGCTGACTTGGAGCTCCATTTGCTGCTGCCCAGCATCAGAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCTGACTTGGAGCTCCATTTGCTGCTGCCCAGCATCAGAGTAT  400

seq1  ACTGTACTCACTATGGCTAGCCTAATGAAAAGATCCCCATTCAAATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACTCACTATGGCTAGCCTAATGAAAAGATCCCCATTCAAATTCAA  450

seq1  ACCATCTCTTCTACTGAGTGCATGGTGCTTTCATAGCAGTGAAACAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTTCTACTGAGTGCATGGTGCTTTCATAGCAGTGAAACAGGTT  500

seq1  GAGCCATCTCAAGCCAGAGACAACATTACTAAATGGGGTTGTGGGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCAAGCCAGAGACAACATTACTAAATGGGGTTGTGGGTGACA  550

seq1  GAGGTGATGTCATCCTCTTTCACTCTTAGACTTCTTGTCCATGGTGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATGTCATCCTCTTTCACTCTTAGACTTCTTGTCCATGGTGGTCC  600

seq1  ATACTATATAAGAAATGGAGGAAGAATGAGGAGATAAATCACAGAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATATAAGAAATGGAGGAAGAATGAGGAGATAAATCACAGAAAAGA  650

seq1  TGAAACATCTGCTCAAAATGTTGTCATTCTTTCATAAAACAAGTGAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCTGCTCAAAATGTTGTCATTCTTTCATAAAACAAGTGAAACA  700

seq1  TCTAACTTTCTGAAAAGAAAACCAGGATGTAATAAAAATGAACAGAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTTCTGAAAAGAAAACCAGGATGTAATAAAAATGAACAGAAAGT  750

seq1  CTTTAAGCATGAGCGACTATAAGTTGTAGGGGGGAAAATCACCCACATGA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTAAGCATGAGCGACTATAAGTTGTAAGGGGGAAAATCACCCACATGA  800

seq1  TGATAAAAATAAAAATACAAGATCAAAATATTGATGGAAAACAGAGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAATAAAAATACAAGATCAAAATATTGATGGAAAACAGAGCAAG  850

seq1  ATTCCTGAAATCTAACAAATAAAACTGAAGGTGAATGAGTGGGAAAAGAA  900
      |||||||||||||||||||| |||||||| ||||||||||||| ||||||
seq2  ATTCCTGAAATCTAACAAAT-AAACTGAA-GTGAATGAGTGGG-AAAGAA  897

seq1  ATACAGACTAGATAACAGACATAGCCAACAGTAAATGAAGACAGAACAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATACAGACTAGATAACAGACATAGCCAACAGTAAATGAAGACAGAAC-AC  946

seq1  AGAGATAGCACACTCGTGACCTGTGTTACAGCCTGGTAGCTGTGCCTCTT  1000
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  AGAGATAGCACACTCGTGACCTGTGTTACAGCCT-GTAGCTGTGCCTC-T  994

seq1  CAGATTCACATGTTCAACTCTACCCTCCAGTCATGATGATCATCTTAAGA  1050
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  CAGATTCACATG-TCAACTCTACCCTCCAGTCATGATGATCATC-TAAGA  1042

seq1  CATGATTAGTGAGGCTATAAAAGATAACCCAGAGAGAGTTTCAT-CGCCC  1099
      |||||||||||||||| |||||||| |||||||||||| ||||| |||||
seq2  CATGATTAGTGAGGCTTTAAAAGATTACCCAGAGAGAG-TTCATCCGCCC  1091

seq1  C-TTCTACTGTGCAAAGACACAGACAAAAGA  1129
      | |||| ||| |  |||||||||||||||||
seq2  CTTTCTTCTGGGTCAAGACACAGACAAAAGA  1122