BAC Information

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BAC

Clone NameB6Ng01-162D16
Chromosome5 (Build37)8 (Build37)
Map Location 84,085,158 - 84,085,97559,664,544 - 59,665,079
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D16.bB6Ng01-162D16.g
ACCDH955119DH955120
length9971,122
definitionDH955119|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D16, 5' end.DH955120|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,085,158 - 84,085,975)(59,664,544 - 59,665,079)
sequence
gaattcactctgaactggcctctatctcatagagattcacctgcctctgc
ctcccaactctgcagtgccaagaccactaaacaaagcatattcttgagtg
tttacattttgcactattactgaagttatgaggaattttatacgtactga
attataaatcctagtggagatgctggtagcctgagtccaggagaaagttg
tacaaggaggaattatgatgtgaatattgatatggaaaaataatattttc
agattataactccatcctatatgctcttatgaaaccacaaaaaaaaagta
gaagggtaacattgtcttctttttttattattattagatattttctttat
ttacatttcaaatgctaaaccttttcccagtttcctgtctgaaaaatttc
ctatctcctcccccccccccccccgctccctaactgacccattcttgctt
cctggccctggcattcccctatactggggcatagaacctccacaggacca
aggggctctcctcccaatgatggtcaactaggccatcctctgctacgtat
gcagctgaagccatgagtcccaccatgtgttttctttgcttggtggttta
gttccagagagctctagggttactggttagttcatattgttgttccttct
ataaagctgcagaccccttcagctccttgggtacctgctctagttccttc
attggggaccctgtgctttgtccaatgcatgactgtgagcttccacttct
gtatttgccaggcactggcagagcctcacaggagaaagctatatcaggct
cctgtcagcaaaatcttttttttaaattgggtatttattttcatttacat
ttccaatgctatcccaaaagtcccacacacactcccccacccagtcccct
acccacccacccccacttcttggccctggcgttcccctgtacggaggcat
ataaagtttgcacaaccaatgggcctcctctttccactgatggccga
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatagtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaaggtttatctat
cttgttgattttctcaaagaaccaactcctcgtttggttaattctttgaa
tagttctttcttgtttccacttggtttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttccttttttttctag
agcttttagatgtgttgtcaagctgctagtttgtgctctctcccgttttt
ctgaaggcactcataagctatgagtttcccttcttaagaaatgctttcat
tgtgtccaaaggttttgggtacgtgtggcttcattttcattaacttctta
aaaagtcttaatttctctttctttaatcttcctgaccaaggtatcattga
agaaagaggtgtgttcagtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84085158_84085975
seq2: B6Ng01-162D16.b_46_864

seq1  GAATTCACTCTGAACTGGCCTCTATCTCATAGAGATTCACCTGCCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGAACTGGCCTCTATCTCATAGAGATTCACCTGCCTCTGC  50

seq1  CTCCCAACTCTGCAGTGCCAAGACCACTAAACAAAGCATATTCTTGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACTCTGCAGTGCCAAGACCACTAAACAAAGCATATTCTTGAGTG  100

seq1  TTTACATTTTGCACTATTACTGAAGTTATGAGGAATTTTATACGTACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTTGCACTATTACTGAAGTTATGAGGAATTTTATACGTACTGA  150

seq1  ATTATAAATCCTAGTGGAGATGCTGGTAGCCTGAGTCCAGGAGAAAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAATCCTAGTGGAGATGCTGGTAGCCTGAGTCCAGGAGAAAGTTG  200

seq1  TACAAGGAGGAATTATGATGTGAATATTGATATGGAAAAATAATATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGAGGAATTATGATGTGAATATTGATATGGAAAAATAATATTTTC  250

seq1  AGATTATAACTCCATCCTATATGCTCTTATGAAACCACAAAAAAAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAACTCCATCCTATATGCTCTTATGAAACCACAAAAAAAAAGTA  300

seq1  GAAGGGTAACATTGTCTTCTTTTTTTATTATTATTAGATATTTTCTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTAACATTGTCTTCTTTTTTTATTATTATTAGATATTTTCTTTAT  350

seq1  TTACATTTCAAATGCTAAACCTTTTCCCAGTTTCCTGTCTGAAAAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCAAATGCTAAACCTTTTCCCAGTTTCCTGTCTGAAAAATTTC  400

seq1  CTATCTCCT-CCCCCCCCCCCCCCGCTCCCTAACTGACCCATTCTTGCTT  449
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCTCCCCCCCCCCCCCCCGCTCCCTAACTGACCCATTCTTGCTT  450

seq1  CCTGGCCCTGGCATTCCCCTATACTGGGGCATAGAACCTCCACAGGACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCTGGCATTCCCCTATACTGGGGCATAGAACCTCCACAGGACCA  500

seq1  AGGGGCTCTCCTCCCAATGATGGTCAACTAGGCCATCCTCTGCTACGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTCTCCTCCCAATGATGGTCAACTAGGCCATCCTCTGCTACGTAT  550

seq1  GCAGCTGAAGCCATGAGTCCCACCATGTGTTTTCTTTGCTTGGTGGTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGAAGCCATGAGTCCCACCATGTGTTTTCTTTGCTTGGTGGTTTA  600

seq1  GTTCCAGAGAGCTCTAGGGTTACTGGTTAGTTCATATTGTTGTTCCTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAGAGCTCTAGGGTTACTGGTTAGTTCATATTGTTGTTCCTTCT  650

seq1  ATAAAGCTGCAGACCCCTTCAGCTCCTTGGGTACCTGCTCTAGTTCCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTGCAGACCCCTTCAGCTCCTTGGGTACCTGCTCTAGTTCCTTC  700

seq1  ATTGGGGACCCTGTGCTTTGTCCAATGCATGACTGTGAGCTTCCACTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGACCCTGTGCTTTGTCCAATGCATGACTGTGAGCTTCCACTTCT  750

seq1  GTATTTGCCAGGCACTGGCAGAGCCTCACAGGAGAAAGCTATATCAGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCCAGGCACTGGCAGAGCCTCACAGGAGAAAGCTATATCAGGCT  800

seq1  CCTGTCAGCAAAATCTTTT  818
      |||||||||||||||||||
seq2  CCTGTCAGCAAAATCTTTT  819

seq1: chr8_59664544_59665079
seq2: B6Ng01-162D16.g_649_1188 (reverse)

seq1  GAAACTGAACAACACTCTT--CTCAATGATACCTTGGTCAAGGAAGGAAT  48
      |||||||||||   |||||   ||||||||||||||||| ||||| || |
seq2  GAAACTGAACACACCTCTTTCTTCAATGATACCTTGGTC-AGGAA-GATT  48

seq1  AAAGAAAGA-AATTAAAGACTTTTT-AGAGTTTAATGAAAATGAAGCCAC  96
      ||||||||| || | |||||||||| |||  |||||||||||||||||||
seq2  AAAGAAAGAGAAATTAAGACTTTTTAAGAAGTTAATGAAAATGAAGCCAC  98

seq1  AACGTACCCAAACCTTTGGGACACAATGAAAGCATTTC-TAAG-AGGGAA  144
       ||||||||||| | || |||||||||||||||||||| |||| ||||||
seq2  -ACGTACCCAAAACCTTTGGACACAATGAAAGCATTTCTTAAGAAGGGAA  147

seq1  ACTCATAGC-TATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACT  193
      ||||||||| ||||||||||||||   ||||||||||||||||||| |||
seq2  ACTCATAGCTTATGAGTGCCTTCA--GAAAAACGGGAGAGAGCACAAACT  195

seq1  AGCAGCTTGACAACACATCTAAAAGCTCTAG-AAAAAAAGGAAGCAAATT  242
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATT  245

seq1  CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATC  295

seq1  -AACCAAGTGGAAACAAG-AAGAACTATTCAAAGAATTAACCAAACGAGG  340
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAACCAAGTGGAAACAAGAAAGAACTATTCAAAGAATTAACCAAACGAGG  345

seq1  AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT  390
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA-CCTTAGCTAGACT  394

seq1  CACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAA  444

seq1  AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCC  490
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACTATCAGATCC  494

seq1  TTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAA  540