BAC Information

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BAC

Clone NameB6Ng01-162L18
Chromosome8 (Build37)
Map Location 72,450,134 - 72,602,871
singlet/doubletdoublet
Overlap geneGatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2
Upstream geneLOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6
Downstream geneHapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162L18.bB6Ng01-162L18.g
ACCDH955497DH955498
length1,1011,028
definitionDH955497|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L18, 5' end.DH955498|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,450,134 - 72,451,229)(72,601,853 - 72,602,871)
sequence
gaattctggggtccccccactactcaaagctgatgtaataagagaaaagg
cccagattgggctgggtcacttataggatattgaaacacaacatcatagt
gtcctagacaacccagtatacaggcagatcctctcatcttagtgacctat
ggagaaagatgtaataaaggcaacaggcaagcagcccatagtgaaaagag
gtagaaagtgagtcagagatagaaaggcccacaagttaagagatggcaac
tggggcaagagagcaccagaactagtattaagggcatatatgtagagttc
ccagagtagaataatagctaagagacaaagtggcctagggatttctctct
gagctttaggcattgcctgttcttcaagccacacagtagcccaaggacag
gctttctggtagggactgtaagagatgtgaagtgaagggtcacatatgca
catgctgagactgtcttgagatattaccctaacagctgggacacgggtgt
ttattcaagacaaattccagcagactgctagggggcctagtttgcatgct
agggaagataatatccaacctgtccccatgtttggcttgtgtgtggttac
cccaaagtggtgggcagtcaacttttctctcacggacttagccttgtgct
tccattagaagggaaaggtgatggaggaggacctaacccagatgtaggcc
agggacctagtgacagagtcataagaaataaactgccacatacactaaaa
acaattttgacatttttaaggagaaagccctcagcttctttcacataact
gaatctgcacagacctcaggagcctgccattaactgctgggcatggagca
agggcaaggctggtcactgtccagatgatcacatgataggcacagcagtt
attcagcccaaatcagagctgtacaagagaatgggcccacagaactcaat
accacaaaccatggtgagcaaagaaaacagaagggtagagagtgtatgga
gcatgttgaaggcctctctggaagaagttcctgggtattactttttttta
ccttgcttgcttccagtgtaagtgccttgtcaagactccattacaagagt
a
gaattctagggaagtcttcactacctctatctcacccccaccccttacct
ggccaatggctccagcaaataccaaggcccagtccggcagccaggagcag
ccagggaaggcaagggcgtaggcagccaggcagtagaatggtagagcata
gaacaaatacatcagcatctaggggagatcacagctgtgaggacacaggt
ggggcatcctcaaggctcctctctttctctatggggtccttcccattacc
cacattaggtctgcactttgctacaggactctggcctagcaagtgggaac
accctctttccaaggctaacatgattgacaggggcatgtgactcaggcta
ggctaatcagagcctgaatgagccatgttcttaaatactagggtatttag
ggtaaccaagggggtggatgaaaccctggagtgcttctgggatgtgtctt
aaagcactggatctcaccacacccaaagtccacatgtccatctgcctggt
aaccacttcagagaagcttcaggcaaccactttcagagaagcttgggcag
gaccacagcctgccctctcacctgcaactttgggtaggccacagggtccc
gaaggtatggctcatatttggtaaatatagatgaagcaggcatctgtggg
gcagtcaagtaccacctaagatacacaaaaaaacaccattcatgtcaaac
atctcacaaggcccctccctactccaactctcaagctgagcccacaataa
tcactctggtccctctcagccctccctgcttctctccccttgccttgggg
ttcaccataagattgcagagaagaggctacagggaataggcgattgtcag
gtcagagttggtgaagtacttcctttgggtgatcagatagaagaatgctt
ttccttttggcaatgaataagtaaatacatttggtgagatgcatgctaaa
atagggagactggaggtgtaaagagcatggtcagcatggcagactcccca
agaccccggaagacagtgaaaagcgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72450134_72451229
seq2: B6Ng01-162L18.b_45_1145

seq1  GAATTCTGGGGTCCCCCCACTACTCAAAGCTGATGTAATAAGAGAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGTCCCCCCACTACTCAAAGCTGATGTAATAAGAGAAAAGG  50

seq1  CCCAGATTGGGCTGGGTCACTTATAGGATATTGAAACACAACATCATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTGGGCTGGGTCACTTATAGGATATTGAAACACAACATCATAGT  100

seq1  GTCCTAGACAACCCAGTATACAGGCAGATCCTCTCATCTTAGTGACCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGACAACCCAGTATACAGGCAGATCCTCTCATCTTAGTGACCTAT  150

seq1  GGAGAAAGATGTAATAAAGGCAACAGGCAAGCAGCCCATAGTGAAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGATGTAATAAAGGCAACAGGCAAGCAGCCCATAGTGAAAAGAG  200

seq1  GTAGAAAGTGAGTCAGAGATAGAAAGGCCCACAAGTTAAGAGATGGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGTGAGTCAGAGATAGAAAGGCCCACAAGTTAAGAGATGGCAAC  250

seq1  TGGGGCAAGAGAGCACCAGAACTAGTATTAAGGGCATATATGTAGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAGAGAGCACCAGAACTAGTATTAAGGGCATATATGTAGAGTTC  300

seq1  CCAGAGTAGAATAATAGCTAAGAGACAAAGTGGCCTAGGGATTTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTAGAATAATAGCTAAGAGACAAAGTGGCCTAGGGATTTCTCTCT  350

seq1  GAGCTTTAGGCATTGCCTGTTCTTCAAGCCACACAGTAGCCCAAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTAGGCATTGCCTGTTCTTCAAGCCACACAGTAGCCCAAGGACAG  400

seq1  GCTTTCTGGTAGGGACTGTAAGAGATGTGAAGTGAAGGGTCACATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGGTAGGGACTGTAAGAGATGTGAAGTGAAGGGTCACATATGCA  450

seq1  CATGCTGAGACTGTCTTGAGATATTACCCTAACAGCTGGGACACGGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGAGACTGTCTTGAGATATTACCCTAACAGCTGGGACACGGGTGT  500

seq1  TTATTCAAGACAAATTCCAGCAGACTGCTAGGGGGCCTAGTTTGCATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAGACAAATTCCAGCAGACTGCTAGGGGGCCTAGTTTGCATGCT  550

seq1  AGGGAAGATAATATCCAACCTGTCCCCATGTTTGGCTTGTGTGTGGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGATAATATCCAACCTGTCCCCATGTTTGGCTTGTGTGTGGTTAC  600

seq1  CCCAAAGTGGTGGGCAGTCAACTTTTCTCTCACGGACTTAGCCTTGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTGGTGGGCAGTCAACTTTTCTCTCACGGACTTAGCCTTGTGCT  650

seq1  TCCATTAGAAGGGAAAGGTGATGGAGGAGGACCTAACCCAGATGTAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGAAGGGAAAGGTGATGGAGGAGGACCTAACCCAGATGTAGGCC  700

seq1  AGGGACCTAGTGACAGAGTCATAAGAAATAAACTGCCACATACACTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTAGTGACAGAGTCATAAGAAATAAACTGCCACATACACTAAAA  750

seq1  ACAATTTTGACA-TTTTAAGGAGAAAGCCCTCAGCTTCTTTCACATAACT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTGACATTTTTAAGGAGAAAGCCCTCAGCTTCTTTCACATAACT  800

seq1  GAATCTGCACAGACCTCAGGAGCCTGCCATTAACTGCTGGGCATGGAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCACAGACCTCAGGAGCCTGCCATTAACTGCTGGGCATGGAGCA  850

seq1  AGGGCAAGGCTGGTCACTGTCCAGATGATCACATGATAGGCACAGCAG-T  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGGCAAGGCTGGTCACTGTCCAGATGATCACATGATAGGCACAGCAGTT  900

seq1  ATTCAGCCCAAATCAGAGCTGTACAGAAGAATGGGCCCACAGAACTCAAT  948
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  ATTCAGCCCAAATCAGAGCTGTACAAGAGAATGGGCCCACAGAACTCAAT  950

seq1  ACCACAAACCATGGTGAGCAAAGAAAACAGAAGGGTAGAGAGTGTATGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACCATGGTGAGCAAAGAAAACAGAAGGGTAGAGAGTGTATGGA  1000

seq1  GCATTGTGGAAGG-CTCTCTGGAAGAAGGTTCTGGGTAATACTTTTTTTT  1047
      ||| ||| ||||| |||||||||||||| | ||||||| |||||||||||
seq2  GCA-TGTTGAAGGCCTCTCTGGAAGAAGTTCCTGGGTATTACTTTTTTTT  1049

seq1  AACCTTGC-TGCTTCAAGTGTATGTGCC-TGTCAGAACT-CATTAC-AGA  1093
       ||||||| |||||| |||||| ||||| |||||  ||| |||||| |||
seq2  -ACCTTGCTTGCTTCCAGTGTAAGTGCCTTGTCAAGACTCCATTACAAGA  1098

seq1  GTA  1096
      |||
seq2  GTA  1101

seq1: chr8_72601853_72602871
seq2: B6Ng01-162L18.g_72_1099 (reverse)

seq1  CAGCGCTCTTCACTGTCTTCCGGGGTC-TGGTGAGTCTGCCTTGCTG-CC  48
      ||||||| ||||||||||||||||||| ||| ||||||||| ||||| ||
seq2  CAGCGCTTTTCACTGTCTTCCGGGGTCTTGGGGAGTCTGCCATGCTGACC  50

seq1  CTGCTCTTT-CACCTCCAGTCTCCCT-TTTTAGCCTGCCTCTC-CCAAAT  95
       |||||||| |||||||||||||||| ||||||| ||| |||| ||||||
seq2  ATGCTCTTTACACCTCCAGTCTCCCTATTTTAGCATGCATCTCACCAAAT  100

seq1  GTATTTCCTTATTCATTGCCAAAAGG-ACAGCATTCTTCTATCTGATCAC  144
      |||||| ||||||||||||||||||| | |||||||||||||||||||||
seq2  GTATTTACTTATTCATTGCCAAAAGGAAAAGCATTCTTCTATCTGATCAC  150

seq1  CC-AAGGAAGTTCTTCACCAACTCTGACCTGACAATCGCCTATTCCCTGT  193
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAAGTACTTCACCAACTCTGACCTGACAATCGCCTATTCCCTGT  200

seq1  AGCCTCTTCTCTGCAATCTTATGGTGAACCCCAAGGCAAGGGGAGAGAAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTCTCTGCAATCTTATGGTGAACCCCAAGGCAAGGGGAGAGAAG  250

seq1  CAGGGAGGGCTGAGAGGGACCAGAGTGATTATTGTGGGCTCAGCTTGAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGGCTGAGAGGGACCAGAGTGATTATTGTGGGCTCAGCTTGAGA  300

seq1  GTTGGAGTAGGGAGGGGCCTTGTGAGATGTTTGACATGAATGGTGTTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGTAGGGAGGGGCCTTGTGAGATGTTTGACATGAATGGTGTTTTT  350

seq1  TTGTGTATCTTAGGTGGTACTTGACTGCCCCACAGATGCCTGCTTCATCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATCTTAGGTGGTACTTGACTGCCCCACAGATGCCTGCTTCATCT  400

seq1  ATATTTACC-AATATGAGCCATACCTTCGGGACCCTGTGGCCTACCCAAA  442
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACCAAATATGAGCCATACCTTCGGGACCCTGTGGCCTACCCAAA  450

seq1  GTTGCAGGTGAGAGGGCAGGCTGTGGTCCTGCCCAAGCTTCTCTG-AAGT  491
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTGCAGGTGAGAGGGCAGGCTGTGGTCCTGCCCAAGCTTCTCTGAAAGT  500

seq1  GGTTGCCTGAAGCTTCTCTGAAGTGGTTACCAGGCAGATGGACATGTGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCTGAAGCTTCTCTGAAGTGGTTACCAGGCAGATGGACATGTGGA  550

seq1  CTTTGGGTGTGGTGAGATCCAGTGCTTTAAGACACATCCCAGAAGCACTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTGTGGTGAGATCCAGTGCTTTAAGACACATCCCAGAAGCACTC  600

seq1  CAGGGTTTCATCCACCCCCTTGGTTACCCTAAATACCCTAGTATTTAAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCATCCACCCCCTTGGTTACCCTAAATACCCTAGTATTTAAGA  650

seq1  ACATGGCTCATTCAGGCTCTGATTAGCCTAGCCTGAGTCACATGCCCCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTCATTCAGGCTCTGATTAGCCTAGCCTGAGTCACATGCCCCTG  700

seq1  TCAATCATGTTAGCCTTGGAAAGAGGGTGTTCCCACTTGCTAGGCCAGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATGTTAGCCTTGGAAAGAGGGTGTTCCCACTTGCTAGGCCAGAG  750

seq1  TCCTGTAGCAAAGTGCAGACCTAATGTGGGTAATGGGAAGGACCCCATAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGCAAAGTGCAGACCTAATGTGGGTAATGGGAAGGACCCCATAG  800

seq1  AGAAAGAGAGGAGCCTTGAGGATGCCCCACCTGTGTCCTCACAGCTGTGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGGAGCCTTGAGGATGCCCCACCTGTGTCCTCACAGCTGTGA  850

seq1  TCTCCCCTAGATGCTGATGTATTTGTTCTATGCTCTACCATTCTACTGCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTAGATGCTGATGTATTTGTTCTATGCTCTACCATTCTACTGCC  900

seq1  TGGCTGCCTACGCCCTTGCCTTCCCTGGCTGCTCCTGGCTGCCGGACTGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCTACGCCCTTGCCTTCCCTGGCTGCTCCTGGCTGCCGGACTGG  950

seq1  GCCTTGGTATTTGCTGGAGCCATTGGCCAGGTAAGGGGTGGGGGTGAGAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTATTTGCTGGAGCCATTGGCCAGGTAAGGGGTGGGGGTGAGAT  1000

seq1  AGAGGTAGTGAAGACTTCCCTAGAATTC  1019
      ||||||||||||||||||||||||||||
seq2  AGAGGTAGTGAAGACTTCCCTAGAATTC  1028