BAC Information

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BAC

Clone NameB6Ng01-162L20
Chromosome8 (Build37)
Map Location 91,085,679 - 91,256,772
singlet/doubletdoublet
Overlap geneNkd1, 9130017C17Rik, Nod2, Cyld
Upstream gene4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369
Downstream geneLOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162L20.bB6Ng01-162L20.g
ACCDH955501DH955502
length1,1311,079
definitionDH955501|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L20, 5' end.DH955502|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,255,643 - 91,256,772)(91,085,679 - 91,086,743)
sequence
gaattcatgtgtcaagacagcagaggcctgtgttcagccattagtgtgcc
cacagaccctgaagttccagaccacaaacacagggtaaagacatgcaaga
gaatgttttgaaaaaagcttgcttacatagtcaagaagagcctggaaatc
agcccgccctctctgtccttccttcttccctccccccttcttcacttcct
ccctctctccctccccctcctctcattccccctctctctcacacacagac
aacatggggaaaaagttggaggccactagttaggacaaatacatcttgct
ctcctgagacatgtgcttctataaaataacttgtgagtgactagcagcag
aaacttactggtatcaaagaatataacatttggcttaaacagatttttat
caggaaatctaaagaatattatagcaatactacaaggtttgtttaatcaa
aagtattacaccaacaaaaagacccccagcctttattctgttctctgctt
ttgaaatcctaccatccctgctaaccacctcgctcttgtgcacagtttac
agagcagagctggcagagcctcttagtttaactgcagtgcacaatcctta
aggccacagattcatggttcaatcttcagagtttaatgttccctgtatta
ttcactccactttaggaaagtcgacacaaaggatggcaacagtgatccca
tgggaaataatttttaatataaagaatttccatgatcacattgatatact
aaagtatacacatacaatgccaacagtttactgccagttacttggttcat
tcaagtgcagtctactacattggaagcagatgccttcatcacatctgttc
acgaactagcttttaaaatctatataaataagatataaaatttgttaact
tgtcaaggaccaaatcttatgacctttcttaactcccagtcagtttctct
actcaaaggcacctcctttcagatacacacacacacacacacacacacac
acacacacacgtccaataagggcactatctacaggtactgcagaaatgtt
gtacttaccagaataaagttgagtctagtaacaagaattgcaatggccct
ggatgcctttctttctttcgatcatttatct
gaattccagatagaagacagagaagttttattttaaatctgttccaaatc
ttgcacaggcaagcctcacactaagcagttctgtgttgtgtctgagatgc
ccagtgctctgggtggagtcggacagcccaggatagacatccaaagatga
tcagtaactctggagggaggagctatgcatggacactgggaggggctgga
caggagattctcactcacagattctatagcgagcacatagagtcagaagg
agggacaaagatacttgggtcccccagagaatggtctgaagttcagccta
gagctgtagatgagcgctctgaggagatgaagggtggaaatgtcccttct
ctctgccagcagagactgagttctggtgtgaggtcctacccttcgctggc
tacactgtcattactatgatttctgggcccgaacctgtgctctttctggt
ttacacaagaccgagcagcctgtctgctgtctgggaagtcaccgcgtgag
gtcggagctccccaactgcagatacttaagtgggaacctgtcttaggtca
aaggcaaggattgtctctggtctcgaggttgtcccaaggcagtcaaatga
aggaactaagatgcaaaggttccatttctgggtggggctctggactctag
cttggtcctgtgaggacctctatagattatgacttctctctagagtttgt
ccagactcaacaggggcttttagccccctctgctcttctcagggccacac
agttctgagccttcagatcagtgccagggtgggttttgaggaagcctcat
aagagtggcagctgggaggcctcaaggagccttgtgtgctgaggctccag
agtggtgagctagtcaccttatcaaaggctctcacagtgctaacacaggg
ggtcagtaagagtgtgtcagacccttccgtggggagacccctggatacgt
tgtgtggtctttctgactgccggggcctgaactggctgcatacagaaatc
ttgcttctttggctggtaatatgggttgtggaaccccgtgagctgatctc
ttgctcccttactttgaggtctcttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_91255643_91256772
seq2: B6Ng01-162L20.b_49_1179 (reverse)

seq1  AGAT-AATGATTGGAAAGAAGAAAGGCATCCAGGGCCATTACAATTCTTG  49
      |||| |||||| | ||  |||||||||||||||||||||| |||||||||
seq2  AGATAAATGATCGAAAGAAAGAAAGGCATCCAGGGCCATTGCAATTCTTG  50

seq1  TTACTTAGACTCAACTTTATTCTGGTAAGTACACATTTTCTGCAGTAACT  99
      |||| ||||||||||||||||||||||||||||   ||||||||||| ||
seq2  TTAC-TAGACTCAACTTTATTCTGGTAAGTACAACATTTCTGCAGTACCT  99

seq1  GTAGATAGTG-CCTTATTGGGACGTGTGTGTGTGTGTGTGTGTGTGTGTG  148
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  GTAGATAGTGCCCTTATT-GGACGTGTGTGTGTGTGTGTGTGTGTGTGTG  148

seq1  TGTGTGTGTATCTGAAAGGAGGTGCCTTTGAGTAGAGAAACTGACTGGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATCTGAAAGGAGGTGCCTTTGAGTAGAGAAACTGACTGGGA  198

seq1  GTTAAGAAAGGTCATAAGATTTGGTCCTTGAC-AGTTAACAAATTTTATA  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTAAGAAAGGTCATAAGATTTGGTCCTTGACAAGTTAACAAATTTTATA  248

seq1  TCTTATTTATATAGATTTTAAAAGCTAGTTCGTGAACAGATGTGATGAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTATATAGATTTTAAAAGCTAGTTCGTGAACAGATGTGATGAAG  298

seq1  GCATCTGCTTCCAATGTAGTAGACTGCACTTGAATGAACCAAGTAACTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTTCCAATGTAGTAGACTGCACTTGAATGAACCAAGTAACTGG  348

seq1  CAGTAAACTGTTGGCATTGTATGTGTATACTTTAGTATATCAATGTGATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAACTGTTGGCATTGTATGTGTATACTTTAGTATATCAATGTGATC  398

seq1  ATGGAAATTCTTTATATTAAAAATTATTTCCCATGGGATCACTGTTGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATTCTTTATATTAAAAATTATTTCCCATGGGATCACTGTTGCCA  448

seq1  TCCTTTGTGTCGACTTTCCTAAAGTGGAGTGAATAATACAGGGAACATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGTCGACTTTCCTAAAGTGGAGTGAATAATACAGGGAACATTA  498

seq1  AACTCTGAAGATTGAACCATGAATCTGTGGCCTTAAGGATTGTGCACTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAAGATTGAACCATGAATCTGTGGCCTTAAGGATTGTGCACTGC  548

seq1  AGTTAAACTAAGAGGCTCTGCCAGCTCTGCTCTGTAAACTGTGCACAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAACTAAGAGGCTCTGCCAGCTCTGCTCTGTAAACTGTGCACAAGA  598

seq1  GCGAGGTGGTTAGCAGGGATGGTAGGATTTCAAAAGCAGAGAACAGAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTGGTTAGCAGGGATGGTAGGATTTCAAAAGCAGAGAACAGAATA  648

seq1  AAGGCTGGGGGTCTTTTTGTTGGTGTAATACTTTTGATTAAACAAACCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGGGTCTTTTTGTTGGTGTAATACTTTTGATTAAACAAACCTT  698

seq1  GTAGTATTGCTATAATATTCTTTAGATTTCCTGATAAAAATCTGTTTAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATTGCTATAATATTCTTTAGATTTCCTGATAAAAATCTGTTTAAG  748

seq1  CCAAATGTTATATTCTTTGATACCAGTAAGTTTCTGCTGCTAGTCACTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTATATTCTTTGATACCAGTAAGTTTCTGCTGCTAGTCACTCA  798

seq1  CAAGTTATTTTATAGAAGCACATGTCTCAGGAGAGCAAGATGTATTTGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTATTTTATAGAAGCACATGTCTCAGGAGAGCAAGATGTATTTGTC  848

seq1  CTAACTAGTGGCCTCCAACTTTTTCCCCATGTTGTCTGTGTGTGAGAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAGTGGCCTCCAACTTTTTCCCCATGTTGTCTGTGTGTGAGAGAG  898

seq1  AGGGGGAATGAGAGGAGGGGGAGGGAGAGAGGGAGGAAGTGAAGAAGGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAATGAGAGGAGGGGGAGGGAGAGAGGGAGGAAGTGAAGAAGGGG  948

seq1  GGAGGGAAGAAGGAAGGACAGAGAGGGCGGGCTGATTTCCAGGCTCTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGAAGGAAGGACAGAGAGGGCGGGCTGATTTCCAGGCTCTTCT  998

seq1  TGACTATGTAAGCAAGCTTTTTTCAAAACATTCTCTTGCATGTCTTTACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATGTAAGCAAGCTTTTTTCAAAACATTCTCTTGCATGTCTTTACC  1048

seq1  CTGTGTTTGTGGTCTGGAACTTCAGGGTCTGTGGGCACACTAATGGCTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGTGGTCTGGAACTTCAGGGTCTGTGGGCACACTAATGGCTGA  1098

seq1  ACACAGGCCTCTGCTGTCTTGACACATGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  ACACAGGCCTCTGCTGTCTTGACACATGAATTC  1131

seq1: chr8_91085679_91086743
seq2: B6Ng01-162L20.g_71_1149

seq1  GAATTCCAGATAGAAGACAGAGAAGTTTTATTTTAAATCTGTTCCAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAGAAGACAGAGAAGTTTTATTTTAAATCTGTTCCAAATC  50

seq1  TTGCACAGGCAAGCCTCACACTAAGCAGTTCTGTGTTGTGTCTGAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGGCAAGCCTCACACTAAGCAGTTCTGTGTTGTGTCTGAGATGC  100

seq1  CCAGTGCTCTGGGTGGAGTCGGACAGCCCAGGATAGACATCCAAAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTCTGGGTGGAGTCGGACAGCCCAGGATAGACATCCAAAGATGA  150

seq1  TCAGTAACTCTGGAGGGAGGAGCTATGCATGGACACTGGGAGGGGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACTCTGGAGGGAGGAGCTATGCATGGACACTGGGAGGGGCTGGA  200

seq1  CAGGAGATTCTCACTCACAGATTCTATAGCGAGCACATAGAGTCAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATTCTCACTCACAGATTCTATAGCGAGCACATAGAGTCAGAAGG  250

seq1  AGGGACAAAGATACTTGGGTCCCCCAGAGAATGGTCTGAAGTTCAGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAAGATACTTGGGTCCCCCAGAGAATGGTCTGAAGTTCAGCCTA  300

seq1  GAGCTGTAGATGAGCGCTCTGAGGAGATGAAGGGTGGAAATGTCCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTAGATGAGCGCTCTGAGGAGATGAAGGGTGGAAATGTCCCTTCT  350

seq1  CTCTGCCAGCAGAGACTGAGTTCTGGTGTGAGGTCCTACCCTTCGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGCAGAGACTGAGTTCTGGTGTGAGGTCCTACCCTTCGCTGGC  400

seq1  TACACTGTCATTACTATGATTTCTGGGCCCGAACCTGTGCTCTTTCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTCATTACTATGATTTCTGGGCCCGAACCTGTGCTCTTTCTGGT  450

seq1  TTACACAAGACCGAGCAGCCTGTCTGCTGTCTGGGAAGTCACCGCGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAGACCGAGCAGCCTGTCTGCTGTCTGGGAAGTCACCGCGTGAG  500

seq1  GTCGGAGCTCCCCAACTGCAGATACTTAAGTGGGAACCTGTCTTAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAGCTCCCCAACTGCAGATACTTAAGTGGGAACCTGTCTTAGGTCA  550

seq1  AAGGCAAGGATTGTCTCTGGTCTCGAGGTTGTCCCAAGGCAGTCAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGGATTGTCTCTGGTCTCGAGGTTGTCCCAAGGCAGTCAAATGA  600

seq1  AGGAACTAAGATGCAAAGGTTCCATTTCTGGGTGGGGCTCTGGACTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTAAGATGCAAAGGTTCCATTTCTGGGTGGGGCTCTGGACTCTAG  650

seq1  CTTGGTCCTGTGAGGACCTCTATAGATTATGACTTCTCTCTAGAGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCTGTGAGGACCTCTATAGATTATGACTTCTCTCTAGAGTTTGT  700

seq1  CCAGACTCAACAGGGGC-TTTAGCCCCCTCTGCTCTTCTCAGGGCCACAC  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAGACTCAACAGGGGCTTTTAGCCCCCTCTGCTCTTCTCAGGGCCACAC  750

seq1  AGTTCTGAGCCTTCAGATCAGGTGCCAGGGTGGGTTTTGAGGAAGCCTCA  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTTCTGAGCCTTCAGATCA-GTGCCAGGGTGGGTTTTGAGGAAGCCTCA  799

seq1  TAAGAGTGGCAGCTGGGAGGCCTCAAGGAGCCTTGTGTGCTGAGGCTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGGCAGCTGGGAGGCCTCAAGGAGCCTTGTGTGCTGAGGCTCCA  849

seq1  GAGTGGTGAGCTAGTCACCCTATCAAAGGCTCTCACAGTGCTAACACA-G  898
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  GAGTGGTGAGCTAGTCACCTTATCAAAGGCTCTCACAGTGCTAACACAGG  899

seq1  GGGTCAGT-AGAGTGTGTCAGACCC-TCCGTGGGGAGACCCCTGGATACG  946
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  GGGTCAGTAAGAGTGTGTCAGACCCTTCCGTGGGGAGACCCCTGGATACG  949

seq1  TTGTGTGGTCTTTCTGACTGCCGGGG-CTGAACTGGCTGCATACAGAA--  993
      |||||||||||||||||||||||||| |||||||||||||||||||||  
seq2  TTGTGTGGTCTTTCTGACTGCCGGGGCCTGAACTGGCTGCATACAGAAAT  999

seq1  CCTGCTCC--TGGCT-GTAA-ATGGGTTGGGGAAACTCCTGAGCTGATCT  1039
      | |||| |  ||||| |||| |||||||| |||| | | |||||||||||
seq2  CTTGCTTCTTTGGCTGGTAATATGGGTTGTGGAACCCCGTGAGCTGATCT  1049

seq1  CTTGCTCC--TACTTTG-GGTCT-TTGGGG  1065
      ||||||||  ||||||| ||||| ||||||
seq2  CTTGCTCCCTTACTTTGAGGTCTCTTGGGG  1079