BAC Information

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BAC

Clone NameB6Ng01-163J10
Chromosome8 (Build37)3 (Build37)
Map Location 40,694,598 - 40,695,842157,677,011 - 157,677,299
singlet/doubletsingletsinglet
Overlap geneMsr1
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
Downstream geneEG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J10.bB6Ng01-163J10.g
ACCDH956136DH956137
length1,215947
definitionDH956136|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J10, 5' end.DH956137|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,694,598 - 40,695,842)(157,677,011 - 157,677,299)
sequence
gaattcttccctctattgcacagttgctttgaaaattactcacaatatca
ataacacatttttcttaagagatagcagtttatgcaacttatcctactat
cctctcagtttatcatctctgacaccttagctagactctgatttctatcc
tcaatagagaaagagaaaagaacttttacaacttgacttttcttttatga
gactttttttgagagtttcatgcaacatattttgatcatatttacttccg
ttccccaactcctcttagatccaccctcaccacacattttcgtgtccatt
tttaaaaacctataaagtcccatttatattgcccaattattcttggatac
gggccctgaagtggacccattttgatataccaagggtatatcaaagaaat
ccactactcctttccccaaagttatcaattgtcaacagtgacttagctac
taatgatgagactttggacccatctaccctaatgttcagatttttgctgt
ctttagctggtatagataacctctttaatagcacaattattttatggttg
attttagggttttaatatgaattatttcattcattttgtactttcatgtt
ttgtttttttctctggttggaatatttgtatgtccctcttaaatattttt
ggtccctaactcaccaagctttttaaaaaatgtaatctgtataaaataga
ttgagacttgaaccacttaaactgtataaattacaccaattgaaatggtt
tgggattttattttaaattaagttagcattagttaaagctaaatattaca
tagctgatgcctatgaaggcaactgctaattttcacttttatattgaagt
tttttttaatatccttaaatgtgctctttatttctgagtaaataatttca
agtgccattaaattggcaaataattaagtaacacaaaaaagaacccaatg
ttttaatttttaagagtactccataatgaagactacaccaaatcttcaca
ctgttcaaaagaaaggattaggatctaaaatataaggggggagggttaaa
gcatgggttggttcattcgatttatttctcccaagagttagcccagtata
aaactcagttcaagtcagctaactttatgctcaaggatagaaagcatggc
aactgctacctgttgcacaatgagtttcacatgtgctccatataggaacc
cgacctgaggacacc
gaattcattagtgagtgtctatttacatcaggcagtttaggtacagctgg
taaaacaaaatttaataacgttttctagcccatgctttcttaaatttttt
cgctcaatcacttcttttgaggaaatgtatacaatttttgtatattgtta
tataaaataggtataccaataaaatatttactggtaacaaattataagaa
aaattattttcaacaagtctttggaacttgtgcaattttaccattcattc
catatacaaccaccaaacccagacactattgtgtatgccacaaagatttt
gctgacaggaccctgacatagctctctcttgtgaggctatgccaatgcct
ggcaaatacagaagtggatgctcacagtcatctattggatggaacacagg
gtccttaatgaaggagctagaaaaattacccaaggagctaaaggtgtctg
caaccctataggaggaacaacaatattaactaaccaataacccccccccc
cagagctgtgtctctagtttcatatgtagcagaagatggcttaatcaacc
atcaatgggaggagaggcccttggtcttgcaaattcatatgccccagtag
aggggaatgccagcgccaggaagcaggagtgggtgggttggggagcaggg
tggcagaagggaatagggagctttggggttagcatttgaaatgtaaccga
agacaatatctaataaaaatgccaaaaaagatgagagatatttttacact
attgagtgggagcccttttttacttttacaaaaatatttgatttattttg
tgtgtgtgtaatgtttggaactccagacttatagcatcttcattgttttc
tagaaattattgcattagatttataacaatcaatgctgctaaacacagtt
gcacagacatgtattacaaaatgttcagaagtagatttagggtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40694598_40695842
seq2: B6Ng01-163J10.b_46_1260

seq1  GAATTCTTCCCTCTATTGCACAGTTGCTTTGAAAATTACTCACAATATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTCTATTGCACAGTTGCTTTGAAAATTACTCACAATATCA  50

seq1  ATAACACATTTTTCTTAAGAGATAGCAGTTTATGCAACTTATCCTACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACATTTTTCTTAAGAGATAGCAGTTTATGCAACTTATCCTACTAT  100

seq1  CCTCTCAGTTTATCATCTCTGACACCTTAGCTAGACTCTGATTTCTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGTTTATCATCTCTGACACCTTAGCTAGACTCTGATTTCTATCC  150

seq1  TCAATAGAGAAAGAGAAAAGAACTTTTACAACTTGACTTTTCTTTTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAGAAAGAGAAAAGAACTTTTACAACTTGACTTTTCTTTTATGA  200

seq1  GACTTTTTTTGAGAGTTTCATGCAACATATTTTGATCATATTTACTTCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTTGAGAGTTTCATGCAACATATTTTGATCATATTTACTTCCG  250

seq1  TTCCCCAACTCCTCTTAGATCCACCCTCACCACACATTTTCGTGTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAACTCCTCTTAGATCCACCCTCACCACACATTTTCGTGTCCATT  300

seq1  TTTAAAAACCTATAAAGTCCCATTTATATTGCCCAATTATTCTTGGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACCTATAAAGTCCCATTTATATTGCCCAATTATTCTTGGATAC  350

seq1  GGGCCCTGAAGTGGACCCATTTTGATATACCAAGGGTATATCAAAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGAAGTGGACCCATTTTGATATACCAAGGGTATATCAAAGAAAT  400

seq1  CCACTACTCCTTTCCCCAAAGTTATCAATTGTCAACAGTGACTTAGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTCCTTTCCCCAAAGTTATCAATTGTCAACAGTGACTTAGCTAC  450

seq1  TAATGATGAGACTTTGGACCCATCTACCCTAATGTTCAGATTTTTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGAGACTTTGGACCCATCTACCCTAATGTTCAGATTTTTGCTGT  500

seq1  CTTTAGCTGGTATAGATAACCTCTTTAATAGCACAATTATTTTATGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTGGTATAGATAACCTCTTTAATAGCACAATTATTTTATGGTTG  550

seq1  ATTTTAGGGTTTTAATATGAATTATTTCATTCATTTTGTACTTTCATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGGTTTTAATATGAATTATTTCATTCATTTTGTACTTTCATGTT  600

seq1  TTGTTTTTTTCTCTGGTTGGAATATTTGTATGTCCCTCTTAAATATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTCTCTGGTTGGAATATTTGTATGTCCCTCTTAAATATTTTT  650

seq1  GGTCCCTAACTCACCAAGCTTTTTAAAAAATGTAATCTGTATAAAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTAACTCACCAAGCTTTTTAAAAAATGTAATCTGTATAAAATAGA  700

seq1  TTGAGACTTGAACCACTTAAACTGTATAAATTACACCAATTGAAATGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTTGAACCACTTAAACTGTATAAATTACACCAATTGAAATGGTT  750

seq1  TGGGATTTTATTTTAAATTAAGTTAGCATTAGTTAAAGCTAAATATTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTATTTTAAATTAAGTTAGCATTAGTTAAAGCTAAATATTACA  800

seq1  TAGCTGATGCCTATGAAGGCAACTGCTAATTTTCACTTTTATATTGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATGCCTATGAAGGCAACTGCTAATTTTCACTTTTATATTGAAGT  850

seq1  TTTTTTTAATATCCTTAAATGTGCTCTTTATTTCTGAGTAAATAATTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATATCCTTAAATGTGCTCTTTATTTCTGAGTAAATAATTTCA  900

seq1  AGTGCCATTAAATTGGCAAAATAATTAAGTAACACAAAAAAGAACCCAAT  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTGCCATTAAATTGGC-AAATAATTAAGTAACACAAAAAAGAACCCAAT  949

seq1  GTTTTAATTTTTAAGAGTACTCCATAATGAAGACTACAACCAAATCTTCA  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTTTAATTTTTAAGAGTACTCCATAATGAAGACTAC-ACCAAATCTTCA  998

seq1  CACTGTTCAAAAAAGAAAGGATTAAGAATCTAAAAATATAAAGGGGGGAG  1050
      ||||||||  ||||||||||||| || |||| ||||||| ||||||||||
seq2  CACTGTTC--AAAAGAAAGGATT-AGGATCT-AAAATAT-AAGGGGGGAG  1043

seq1  GGTTAAAGGCATGTG-TGGTTCA-TCGATTTTATTCTTCACAAAGAGTCA  1098
      ||||||| ||||| | ||||||| |||||||  ||||   | |||||| |
seq2  GGTTAAA-GCATGGGTTGGTTCATTCGATTTATTTCT--CCCAAGAGTTA  1090

seq1  GCCACAGTATAAAACTCAGTTTCAAAAGTTCAGCTTAAACTTTATGCTCA  1148
      ||| ||||||||||||||| |||||    ||||||  |||||||||||||
seq2  GCC-CAGTATAAAACTCAG-TTCAA---GTCAGCT--AACTTTATGCTCA  1133

seq1  GGGATAGAGAAAGCAATGCACAACTGCTAGCTGTGTTTGCACAATGATGT  1198
       ||||  ||||||||  |  ||||||||| |||   ||||||||||| ||
seq2  AGGAT--AGAAAGCATGG--CAACTGCTACCTG---TTGCACAATGA-GT  1175

seq1  CTCCACCAGTGTGCTACAAATAGGAGAACCCCAGCCCTGAGGACACC  1245
       | |||   |||||| || ||||  ||||||  | ||||||||||||
seq2  -TTCAC--ATGTGCTCCATATAG--GAACCC--GACCTGAGGACACC  1215

seq1: chr3_157677011_157677299
seq2: B6Ng01-163J10.g_120_607

seq1  --------------------------------------------------  0
                                                        
seq2  AAACAAAATTTAATAACGTTTTCTAGCCCATGCTTTCTTAAATTTTTTCG  50

seq1  --------------------------------------------------  0
                                                        
seq2  CTCAATCACTTCTTTTGAGGAAATGTATACAATTTTTGTATATTGTTATA  100

seq1  --------------------------------AAACAAAATTTAATAAAG  18
                                       |||||| | ||| ||| 
seq2  TAAAATAGGTATACCAATAAAATATTTACTGGTAACAAATTATAAGAAA-  149

seq1  GGTGATGACTAACAAGTCATTCAA-----TGTAATCTCACCCTTCTT---  60
        | ||    |||||||| ||  |     || ||| | ||| ||| |   
seq2  AATTATTTTCAACAAGTCTTTGGAACTTGTGCAATTTTACCATTCATTCC  199

seq1  AT-GACAAATAGCA-----------TATT-TGTA----ATAAATTTTTT-  92
      ||  ||||  | ||           |||| ||||    | |||  |||| 
seq2  ATATACAACCACCAAACCCAGACACTATTGTGTATGCCACAAAGATTTTG  249

seq1  ---------------CTAAGCT-TCCCATTT-------------TTTTTG  113
                     |  |||| || | | |             |   ||
seq2  CTGACAGGACCCTGACATAGCTCTCTCTTGTGAGGCTATGCCAATGCCTG  299

seq1  GATAGTTCA----------CTAGAACTTATCTCT--GATAGAAAAGTGGC  151
      |  | | ||          ||   | | |||| |  ||| ||| |  || 
seq2  GCAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGG-  348

seq1  CTATGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGG  201
          | ||  |||| |||||||||| ||| |||||||||||||||||| |
seq2  ----GTCCTTAATGAAGGAGCTAGAAAAATTACCCAAGGAGCTAAAGGTG  394

seq1  TCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTA-------  244
      |||||||||||||||| ||||||||||||| ||||||||| ||       
seq2  TCTGCAACCCTATAGGAGGAACAACAATATTAACTAACCAATAACCCCCC  444

seq1  CACCTGGAGCTCGTGTCTCTAGCTGGATATGTAGCAGAAGATGGC  289
      | ||  ||||| |||||||||| |  |||||||||||||||||||
seq2  CCCCCAGAGCT-GTGTCTCTAGTTTCATATGTAGCAGAAGATGGC  488