BAC Information

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BAC

Clone NameB6Ng01-163M18
Chromosome8 (Build37)
Map Location 109,553,449 - 109,670,337
singlet/doubletdoublet
Overlap geneVps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
Upstream geneDus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
Downstream geneCyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163M18.bB6Ng01-163M18.g
ACCDH956292DH956293
length1,1361,245
definitionDH956292|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M18, 5' end.DH956293|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,669,196 - 109,670,337)(109,553,449 - 109,554,732)
sequence
gaattcctgggagaaatcccaggtccctggaaagccttgtttcataatct
ggtagcctacttccttattcatgctccacttcttgaagatttcacaactt
tcctaaattgcaccactggctgggcccaagtgctccaatgatgaacctgt
ggggaacaactcacatccaagtgatagtatcctgtctcacaatatttgtt
taattcttaagcatttatctctctgtgtatgtatgcacatttataggcac
acatatggtcacatgacaactgatgggagttgtttctttcctcctgtcat
gtgggttcttgagatccaagtctccagtccttaactttatatatatatat
atatatagatagatagatagatagatagagagagagctgagactatagct
taacaatagagctctttaactatcaatggtgaagccttgggtcttcctca
gcactgaaaagaactagactagaacagatggtgggatggaaatgtctctt
caaatcagacatggaaacagtaaagaggaaaggtgaccttctatggtgtc
tggacaaactaataattaaacattttgctatgagtttttccaagacagca
ataaagctaaaatccaaacataaccaaagacttaagtatagtacaagaaa
aaataaacacaactgtgttaactcaaagtttggaaacagggaagcaggct
ggggagatggctctgtggatagagctctggctatccaggcatgaggacct
gagttcaaaactcacgtaaaaggacagaccctgtgagaacacgactatca
ttccagcactgaggaggaggagtcagacagatgctaggtgctcactgacc
agccattctaatctacacaacaagccccagggtaaatgagagaccctgtc
tcaataaatatgtcggggaaaaaacagaggacacctaacattaatctcca
tcttccatgaaaagatagagagttgattaatctctctctctctctctctg
cctcttctcaaacaactggtgacaattcaaagcagagccaataaaaaaag
cagagcaaaaaatactttgagccctcgtcaatattacattttcttggtta
tattacttttgtggaaagtaattgtgctacgtcata
gaattccaagggtgtccagcaagtgtgccttccgcctagcaggcttcaag
ggagcatggccctaccagtaacttgagttttagacctccagcctctagaa
ctcctggggtctttttttttctttttggcataatttttttcttcctgtga
actcagaacctctggaagagcagccagtgctcttaactgctgtgccatct
ctccagcatctctccagccccgactggttttttgaaacggggtctcttta
tgctgtcctgttggtcttggagcttgctgtatagttcaggctgtcctcaa
actcacaagagatcctcttgcctctggctcctgagcgcaggttattaaaa
gcatgtgccaccatgatctttattgtagctatgagggagggaacagtcag
aggcatccggaagagcccagagctgagaaagaacagagtggactgaatag
ggtcagctgactggacctgactgtgaggggagcaggagctgtgcagagag
ggagagacaagacaagaccaagagggcacagagctgaaatcgcagggtta
tgaggagaaatgagtagctggggaagggaagcccatgagtgacgtttagg
ggagggagcaaagcgcacattagcccacagacctggaggctagtgtgcgc
ttccctatgctgacaggcacctcagacagccatgttccttctgccagtgg
taagggaaatgacgtggctcctttgataaaggggaagcagctccagaatc
tcaggaaatgcagtttcctttgcacctgacacagagagagagaccctgcc
tgaaaaaaagaagtatctgggcatggcaacccaaaactttaatcccagca
aaggcaggcagatctctgagagtttgggtgggcaggagtgtggcaatcag
aggacaactataagaagtctgctctcttcttccacccagcatgaacttgg
ggattatagctcatttgtcttgtcaacaagtgctttaacttgctgagcca
tctccgctgggccagaaaaagttacagttaaaaaactagccacaaacctt
gtgggggtaccagccctttatctcagaactcaaccgacagaggcaggtgt
gattccctctgatcaagttacgccttcggccgacaacctgaattcagaca
gcccaggacaacacgtgaatccgtctctgtaaaaatctgattgtagaaca
cctacataaacagcttgataagactacttctctcataacatagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109669196_109670337
seq2: B6Ng01-163M18.b_44_1179 (reverse)

seq1  TATGCACGTAGCACACATCACTCTCACACAAAAGTAATAATAAACAAAGA  50
      |||| |||||||||| || ||| || |||||||||||||   ||| ||||
seq2  TATG-ACGTAGCACA-ATTACTTTC-CACAAAAGTAATA--TAACCAAGA  45

seq1  AAATGTAATATTGACGA-GGCTCAAGTTATTTTTTGCTCTTGCTTTTTTT  99
      ||||||||||||||||| |||||||  |||||||||||| ||||||||||
seq2  AAATGTAATATTGACGAGGGCTCAAAGTATTTTTTGCTC-TGCTTTTTTT  94

seq1  TTTGGCTCTTGCTTTGAATTGTCA-CAGTTGTTTTGAG-AGAGGCAGAGA  147
       ||||||| ||||||||||||||| |||||| |||||| |||||||||||
seq2  ATTGGCTC-TGCTTTGAATTGTCACCAGTTG-TTTGAGAAGAGGCAGAGA  142

seq1  GAGAGAGAGAGAGATTAATCAACTCTCTATTTTCTCATGGAAGATGGAGA  197
      |||||||||||||||||||||||||||||| || ||||||||||||||||
seq2  GAGAGAGAGAGAGATTAATCAACTCTCTATCTTTTCATGGAAGATGGAGA  192

seq1  TTAATGTTAGGTGTCCTCTGTTTTTTCCCCGACCTTATTTATTGAGACAG  247
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  TTAATGTTAGGTGTCCTCTGTTTTTTCCCCGA-CATATTTATTGAGACAG  241

seq1  GGTCTCTCATTTACCCTGGGGCTTGTTGTGTAGATTAGAATGGCTGGCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTCTCTCATTTACCCTGGGGCTTGTTGTGTAGATTAGAATGGCTGGTCA  291

seq1  GTGAGCACCTAGCATCTGTCTGACTCCTCCTCCTCAGTGCTGGAATGATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACCTAGCATCTGTCTGACTCCTCCTCCTCAGTGCTGGAATGATA  341

seq1  GTCGTGTTCTCACAGGGTCTGTCCTTTTACGTGAGTTTTGAACTCAGGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTTCTCACAGGGTCTGTCCTTTTACGTGAGTTTTGAACTCAGGTC  391

seq1  CTCATGCCTGGATAGCCAGAGCTCTATCCACAGAGCCATCTCCCCAGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTGGATAGCCAGAGCTCTATCCACAGAGCCATCTCCCCAGCCT  441

seq1  GCTTCCCTGTTTCCAAACTTTGAGTTAACACAGTTGTGTTTATTTTTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTGTTTCCAAACTTTGAGTTAACACAGTTGTGTTTATTTTTTCT  491

seq1  TGTACTATACTTAAGTCTTTGGTTATGTTTGGATTTTAGCTTTATTGCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATACTTAAGTCTTTGGTTATGTTTGGATTTTAGCTTTATTGCTG  541

seq1  TCTTGGAAAAACTCATAGCAAAATGTTTAATTATTAGTTTGTCCAGACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAAAACTCATAGCAAAATGTTTAATTATTAGTTTGTCCAGACAC  591

seq1  CATAGAAGGTCACCTTTCCTCTTTACTGTTTCCATGTCTGATTTGAAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGGTCACCTTTCCTCTTTACTGTTTCCATGTCTGATTTGAAGAG  641

seq1  ACATTTCCATCCCACCATCTGTTCTAGTCTAGTTCTTTTCAGTGCTGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCATCCCACCATCTGTTCTAGTCTAGTTCTTTTCAGTGCTGAGG  691

seq1  AAGACCCAAGGCTTCACCATTGATAGTTAAAGAGCTCTATTGTTAAGCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAAGGCTTCACCATTGATAGTTAAAGAGCTCTATTGTTAAGCTA  741

seq1  TAGTCTCAGCTCTCTCTCTATCTATCTATCTATCTATCTATATATATATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCAGCTCTCTCTCTATCTATCTATCTATCTATCTATATATATATA  791

seq1  TATATATAAAGTTAAGGACTGGAGACTTGGATCTCAAGAACCCACATGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAAGTTAAGGACTGGAGACTTGGATCTCAAGAACCCACATGAC  841

seq1  AGGAGGAAAGAAACAACTCCCATCAGTTGTCATGTGACCATATGTGTGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAAGAAACAACTCCCATCAGTTGTCATGTGACCATATGTGTGCC  891

seq1  TATAAATGTGCATACATACACAGAGAGATAAATGCTTAAGAATTAAACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTGCATACATACACAGAGAGATAAATGCTTAAGAATTAAACAA  941

seq1  ATATTGTGAGACAGGATACTATCACTTGGATGTGAGTTGTTCCCCACAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGAGACAGGATACTATCACTTGGATGTGAGTTGTTCCCCACAGG  991

seq1  TTCATCATTGGAGCACTTGGGCCCAGCCAGTGGTGCAATTTAGGAAAGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATTGGAGCACTTGGGCCCAGCCAGTGGTGCAATTTAGGAAAGTT  1041

seq1  GTGAAATCTTCAAGAAGTGGAGCATGAATAAGGAAGTAGGCTACCAGATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTTCAAGAAGTGGAGCATGAATAAGGAAGTAGGCTACCAGATT  1091

seq1  ATGAAACAAGGCATTCCAGGGACCTGGGATTTCTCCCAGGAATTC  1142
      |||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAAACAAGGCTTTCCAGGGACCTGGGATTTCTCCCAGGAATTC  1136

seq1: chr8_109553449_109554732
seq2: B6Ng01-163M18.g_68_1312

seq1  GAATTCCAAGGGTGTCCAGCAAGTGTGCCTTCCGCCTAGCAGGCTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGTGTCCAGCAAGTGTGCCTTCCGCCTAGCAGGCTTCAAG  50

seq1  GGAGCATGGCCCTACCAGTAACTTGAGTTTTAGACCTCCAGCCTCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGCCCTACCAGTAACTTGAGTTTTAGACCTCCAGCCTCTAGAA  100

seq1  CTCCTGGGGTCTTTTTTTTTCTTTTTGGCATAATTTTTTTCTTCCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGGTCTTTTTTTTTCTTTTTGGCATAATTTTTTTCTTCCTGTGA  150

seq1  ACTCAGAACCTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGTGCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAACCTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGTGCCATCT  200

seq1  CTCCAGCATCTCTCCAGCCCCGACTGGTTTTTTGAAACGGGGTCTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATCTCTCCAGCCCCGACTGGTTTTTTGAAACGGGGTCTCTTTA  250

seq1  TGCTGTCCTGTTGGTCTTGGAGCTTGCTGTATAGTTCAGGCTGTCCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTGTTGGTCTTGGAGCTTGCTGTATAGTTCAGGCTGTCCTCAA  300

seq1  ACTCACAAGAGATCCTCTTGCCTCTGGCTCCTGAGCGCAGGTTATTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAGAGATCCTCTTGCCTCTGGCTCCTGAGCGCAGGTTATTAAAA  350

seq1  GCATGTGCCACCATGATCTTTATTGTAGCTATGAGGGAGGGAACAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCACCATGATCTTTATTGTAGCTATGAGGGAGGGAACAGTCAG  400

seq1  AGGCATCCGGAAGAGCCCAGAGCTGAGAAAGAACAGAGTGGACTGAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCGGAAGAGCCCAGAGCTGAGAAAGAACAGAGTGGACTGAATAG  450

seq1  GGTCAGCTGACTGGACCTGACTGTGAGGGGAGCAGGAGCTGTGCAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTGACTGGACCTGACTGTGAGGGGAGCAGGAGCTGTGCAGAGAG  500

seq1  GGAGAGACAAGACAAGACCAAGAGGGCACAGAGCTGAAATCGCAGGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACAAGACAAGACCAAGAGGGCACAGAGCTGAAATCGCAGGGTTA  550

seq1  TGAGGAGAAATGAGTAGCTGGGGAAGGGAAGCCCATGAGTGACGTTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAAATGAGTAGCTGGGGAAGGGAAGCCCATGAGTGACGTTTAGG  600

seq1  GGAGGGAGCAAAGCGCACATTAGCCCACAGACCTGGAGGCTAGTGTGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGCAAAGCGCACATTAGCCCACAGACCTGGAGGCTAGTGTGCGC  650

seq1  TTCCCTATGCTGACAGGCACCTCAGACAGCCATGTTCCTTCTGCCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATGCTGACAGGCACCTCAGACAGCCATGTTCCTTCTGCCAGTGG  700

seq1  TAAGGGAAATGACGTGGCTCCTTTGATAAAGGGGAAGCAGCTCCAGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAATGACGTGGCTCCTTTGATAAAGGGGAAGCAGCTCCAGAATC  750

seq1  TCAGGAAATGCAGTTTCCTTTGCACCTGACACAGAGAGAGAGACCCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATGCAGTTTCCTTTGCACCTGACACAGAGAGAGAGACCCTGCC  800

seq1  TGAAAAAAAGAAGTATCTGGGCATGGCAACCCAAAACTTTAATCCCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAGAAGTATCTGGGCATGGCAACCCAAAACTTTAATCCCAGCA  850

seq1  AAGGCAGGCAGATCTCTGAGAGTTTGGGTGGGCAGGAGTGTGGCAATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGCAGATCTCTGAGAGTTTGGGTGGGCAGGAGTGTGGCAATCAG  900

seq1  AGGACAACTATAAGAAGTCTGCTCTCTTCTTCCACCCAGCAGGAAC-TGG  949
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  AGGACAACTATAAGAAGTCTGCTCTCTTCTTCCACCCAGCATGAACTTGG  950

seq1  GGATATTAGCTCATTTGTCTTGTGCACAAGTGCTTTTACCTGCTGAGCCA  999
      ||||  |||||||||||||||||  ||||||||||| || ||||||||||
seq2  GGATTATAGCTCATTTGTCTTGTCAACAAGTGCTTTAACTTGCTGAGCCA  1000

seq1  TCT-CGCTGGCCCAGAAAAGTTAACAGTT-AAAAACTAG-CACAAACTTG  1046
      ||| |||||| ||||||||  | |||||| ||||||||| ||||||| | 
seq2  TCTCCGCTGGGCCAGAAAAAGTTACAGTTAAAAAACTAGCCACAAACCTT  1050

seq1  GTGGTGGTACAAGCCTTTAATCTCAGAACTCAGACGGCAGAGGCAGGTG-  1095
      |||| ||||| |||| || |||||||||||||  || |||||||||||| 
seq2  GTGGGGGTACCAGCCCTTTATCTCAGAACTCAACCGACAGAGGCAGGTGT  1100

seq1  GAT---CTCTGTTCGAGGTTACGCCT--GGTCGACAGCCTGAGTTCCAAG  1140
      |||   ||||| || | |||||||||  || ||||| ||||| |||  ||
seq2  GATTCCCTCTGATC-AAGTTACGCCTTCGGCCGACAACCTGAATTC--AG  1147

seq1  ACAGCCAAGG-CAACACAGTGAAACCCTGTCTTGAAAAAAAAATAAAAAT  1189
      |||||| ||| |||||| ||||| ||  ||||    |||||  | |   |
seq2  ACAGCCCAGGACAACAC-GTGAATCC--GTCTCTGTAAAAATCTGATTGT  1194

seq1  A-AAAACCATCACAAAACAGGCT--TTAGAATCATTCTCTCATAAC--AG  1234
      | || |||  ||  ||||||  |  | ||| |  ||||||||||||  ||
seq2  AGAACACCTACA-TAAACAGCTTGATAAGACTACTTCTCTCATAACATAG  1243

seq1  TTACCTGGGATTGAACCCACAGTGTGACATTCACTATGTATACATTAGTT  1284
      ||                                                
seq2  TT------------------------------------------------  1245