BAC Information

Click to search

BAC

Clone NameB6Ng01-164C02
Chromosome8 (Build37)
Map Location 53,113,673 - 53,255,370
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164C02.bB6Ng01-164C02.g
ACCDH956541DH956542
length5061,175
definitionDH956541|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C02, 5' end.DH956542|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,113,673 - 53,114,184)(53,254,182 - 53,255,370)
sequence
cagattaattgagattaaataaagaactttttttgaatgtttcatctatg
aaaacagtaaaagcagttatagtttttcttcatactcagtagtcacactc
ataaccattaagtaaaattttggtttaattttaagttacataactagaca
aaaatatctgttaggtttatgtatagaaagtgtggtggaatttaatttaa
aatttgaatttgaaaaattatcccaataacattgaaactagcaagttaac
tgaacgaagcctgtgaaatagtatagccctttcttaaacctttagcttaa
agttaggacagagggtcatgattaatatgaaataaggttcttataaattt
tctcacccagttctttagtcttccatgagccataaatgtgggagatatgc
tgcatctacaagtactggatctgggtgtctcacagtctattgatatttgt
gttgtacacccagatccagtactttgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtg
gaattccaggacagggaagcaggaacgggtgtgtttgtgaacagggggga
gatgccaccaggggtttttggagaggaaatgaggaaagaggataaaaatt
gaaatataaataaaaaatatctaataataataaaataaataaattataaa
ttatttattatttagctgtatttttttaaatttttaattaataatgggat
tttttatcattaggacaaatgtaatattttgaaaataattgtagatttat
gtgtacacatacatatccacacatacctattgggtattggttatttaggg
gtaattattatgttcactagtgtctttgctagagttcaattcctgtgata
aatatgaacaaaggaaacttggagaaaaaatatttattctagcttacagt
tctcagtttagaattcatcatagaagtaagtcaagcaggaacttggaggc
gagagctaaagcaaaggccatggtgtagtgctgcctactgacttagtcct
catgtcttgttcagtgcacacacttgtagcacctaccagtccctgcccac
gtgtggaaccatccacagtttaaatgggacaacctagatcaatcattaat
caagaaaaaaaaattatttgtccttgggccaatcaggtgggagttatttt
cttaattaatgtttctctttcaaaatgactctaatcagtgtccaatgggt
gtagaaaacctagcaagcacaaacaggttataccctcttccctcattggt
gctattaattcaaccctaacaaacacttgtcgtttgctttcagtgagtat
atgttccatacattatttccagatagaagccttatgttaccttaccatgc
tgtgccttagaacaatacagttctcaccttcagtcaccatttttctcatt
ttatgaccatctcttgtcctgtaatttgccattgcccaagaacctccata
aacaccatatctgtaatatcattggatctagatttcatagccaatgcttt
tctttttgtcctgacctattttttttgttcatagtctaacatctacaaag
tctattttttagtgtctaatgcagttttaggggttaaaatgggaggtcca
atggtaaactactttctatctctacgaaaacaggttgatacaaacagcta
ctcacagtcaccttctgtatccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53113673_53114184
seq2: B6Ng01-164C02.b_45_556

seq1  GAATTCCAGATTAATTGAGATTAAATAAAGAACTTTTTTTGAATGTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTAATTGAGATTAAATAAAGAACTTTTTTTGAATGTTTCA  50

seq1  TCTATGAAAACAGTAAAAGCAGTTATAGTTTTTCTTCATACTCAGTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAAACAGTAAAAGCAGTTATAGTTTTTCTTCATACTCAGTAGTC  100

seq1  ACACTCATAACCATTAAGTAAAATTTTGGTTTAATTTTAAGTTACATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATAACCATTAAGTAAAATTTTGGTTTAATTTTAAGTTACATAAC  150

seq1  TAGACAAAAATATCTGTTAGGTTTATGTATAGAAAGTGTGGTGGAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAAAATATCTGTTAGGTTTATGTATAGAAAGTGTGGTGGAATTTA  200

seq1  ATTTAAAATTTGAATTTGAAAAATTATCCCAATAACATTGAAACTAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATTTGAATTTGAAAAATTATCCCAATAACATTGAAACTAGCAA  250

seq1  GTTAACTGAACGAAGCCTGTGAAATAGTATAGCCCTTTCTTAAACCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTGAACGAAGCCTGTGAAATAGTATAGCCCTTTCTTAAACCTTTA  300

seq1  GCTTAAAGTTAGGACAGAGGGTCATGATTAATATGAAATAAGGTTCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGTTAGGACAGAGGGTCATGATTAATATGAAATAAGGTTCTTAT  350

seq1  AAATTTTCTCACCCAGTTCTTTAGTCTTCCATGAGCCATAAATGTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTCACCCAGTTCTTTAGTCTTCCATGAGCCATAAATGTGGGAG  400

seq1  ATATGCTGCATCTACAAGTACTGGATCTGGGTGTCTCACAGTCTATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGCATCTACAAGTACTGGATCTGGGTGTCTCACAGTCTATTGAT  450

seq1  ATTTGTGTTGTACACCCAGATCCAGTACTTTGTGTGTGTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTGTACACCCAGATCCAGTACTTTGTGTGTGTGTGTGTGTGTG  500

seq1  TGTGTGTGTGTG  512
      ||||||||||||
seq2  TGTGTGTGTGTG  512

seq1: chr8_53254182_53255370
seq2: B6Ng01-164C02.g_68_1242 (reverse)

seq1  ACTGGAATACAGAAGGTTGACTGTGAGTAGCCTGATTTGTATCAAACTTG  50
      ||||| |||||||||| ||||||||||||| ||| |||||||||| ||  
seq2  ACTGG-ATACAGAAGG-TGACTGTGAGTAG-CTG-TTTGTATCAACCT--  44

seq1  GGTTTTGTAGAAGAGTAGAAAGTAGGTTTAACCATTGGACCTCCCTTTTT  100
      | ||| |||| ||| ||||||||||  || ||||||||||||||| ||||
seq2  GTTTTCGTAG-AGA-TAGAAAGTAG--TTTACCATTGGACCTCCCATTTT  90

seq1  AACCCCTAAAACTGCCATTTAGACACT-ATAAATAGACTTTGTAGATGTT  149
      |||||||||||||||   ||||||||| | ||||||||||||||||||||
seq2  AACCCCTAAAACTGC--ATTAGACACTAAAAAATAGACTTTGTAGATGTT  138

seq1  AGACTATGAACAAAAAAAAATAGGTCAGGAACAAAAAGAAAAGCATTGGC  199
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AGACTATGAAC-AAAAAAAATAGGTCAGG-ACAAAAAGAAAAGCATTGGC  186

seq1  TATGAAATCTAAGATCCAATGATATTACAGATAATGGTGTTTATGGAGGT  249
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TATGAAATCT-AGATCCAATGATATTACAGAT-ATGGTGTTTATGGAGGT  234

seq1  TCTTGGGCAATGGCAAATTACAGGACAAGAGATGGTCAT-AAATGAGAAA  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTGGGCAATGGCAAATTACAGGACAAGAGATGGTCATAAAATGAGAAA  284

seq1  AATGGTGACTGAAGGTGAGAACTGTATTGTTCTAAGGCACAGCATGGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGACTGAAGGTGAGAACTGTATTGTTCTAAGGCACAGCATGGTAA  334

seq1  GGTAACATAAGGCTTCTATCTGGAAATAATGTATGGAACATATACTCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATAAGGCTTCTATCTGGAAATAATGTATGGAACATATACTCACT  384

seq1  GAAAGCAAACGACAAGTGTTTGTTAGGGTTGAATTAATAGCACCAATGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAACGACAAGTGTTTGTTAGGGTTGAATTAATAGCACCAATGAG  434

seq1  GGAAGAGGGTATAACCTGTTTGTGCTTGCTAGGTTTTCTACACCCATTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGTATAACCTGTTTGTGCTTGCTAGGTTTTCTACACCCATTGG  484

seq1  ACACTGATTAGAGTCATTTTGAAAGAGAAACATTAATTAAGAAAATAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATTAGAGTCATTTTGAAAGAGAAACATTAATTAAGAAAATAACT  534

seq1  CCCACCTGATTGGCCCAAGGACAAATAATTTTTTTTTCTTGATTAATGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGATTGGCCCAAGGACAAATAATTTTTTTTTCTTGATTAATGAT  584

seq1  TGATCTAGGTTGTCCCATTTAAACTGTGGATGGTTCCACACGTGGGCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGGTTGTCCCATTTAAACTGTGGATGGTTCCACACGTGGGCAGG  634

seq1  GACTGGTAGGTGCTACAAGTGTGTGCACTGAACAAGACATGAGGACTAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTAGGTGCTACAAGTGTGTGCACTGAACAAGACATGAGGACTAAG  684

seq1  TCAGTAGGCAGCACTACACCATGGCCTTTGCTTTAGCTCTCGCCTCCAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGCAGCACTACACCATGGCCTTTGCTTTAGCTCTCGCCTCCAAG  734

seq1  TTCCTGCTTGACTTACTTCTATGATGAATTCTAAACTGAGAACTGTAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTGACTTACTTCTATGATGAATTCTAAACTGAGAACTGTAAGC  784

seq1  TAGAATAAATATTTTTTCTCCAAGTTTCCTTTGTTCATATTTATCACAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAATATTTTTTCTCCAAGTTTCCTTTGTTCATATTTATCACAGG  834

seq1  AATTGAACTCTAGCAAAGACACTAGTGAACATAATAATTACCCCTAAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCTAGCAAAGACACTAGTGAACATAATAATTACCCCTAAATA  884

seq1  ACCAATACCCAATAGGTATGTGTGGATATGTATGTGTACACATAAATCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACCCAATAGGTATGTGTGGATATGTATGTGTACACATAAATCTA  934

seq1  CAATTATTTTCAAAATATTACATTTGTCCTAATGATAAAAAATCCCATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTTTCAAAATATTACATTTGTCCTAATGATAAAAAATCCCATTA  984

seq1  TTAATTAAAAATTTAAAAAAATACAGCTAAATAATAAATAATTTATAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAAATTTAAAAAAATACAGCTAAATAATAAATAATTTATAATT  1034

seq1  TATTTATTTTATTATTATTAGATATTTTTTATTTATATTTCAATTTTTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTATTATTATTAGATATTTTTTATTTATATTTCAATTTTTAT  1084

seq1  CCTCTTTCCTCATTTCCTCTCCAAAAACCCCTGGTGGCATCTCCCCCCTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCTCATTTCCTCTCCAAAAACCCCTGGTGGCATCTCCCCCCTG  1134

seq1  TTCACAAACACACCCGTTCCTGCTTCCCTGTCCTGGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAACACACCCGTTCCTGCTTCCCTGTCCTGGAATTC  1175