BAC Information

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BAC

Clone NameB6Ng01-165C12
Chromosome8 (Build37)
Map Location 17,159,856 - 17,160,862
singlet/doubletsinglet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C12.bB6Ng01-165C12.g
ACCDH957290DH957291
length1,2591,001
definitionDH957290|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C12, 5' end.DH957291|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccagctctccagtgttgcgtgccctcaactagtcaggaagaac
gatgctgcaacaggatccttctgcacacgtttattcagtcctgtttcttc
ttgtttatatctctcttgtttatatctcccctgtttttatatctcccctg
tttatatctcccttgtttatatatctcccttgtttttatatctcccttgt
ttatatatcgcgcccgaaccctgggcctctcactcttttatactctcagt
tctcatccacgcacagcaggccacgccccctcgccagtcacgaggcttca
gctaatcagggcagcaggggcaaatctccaccaaattggattcacctgta
tcctggtacacctgcgcagcactcaagatgtttgtgtcttatatgaggaa
gtcaggtgcaagtcatatgacttagctgcagtccctggcgcctttgggac
tgccgccacacccgctccccacaattcccccttttttcttttttggcaga
gagaatgtctgtagatagccccccgcagccatgccccttacccgtccttg
ggtgacaaacagcattggtttgatccctgtcttaggttggtgacatgccc
agggagtcttatcactgactacctctctattatgccaagccacacctggg
gagattgtgtttttgctttgcggcaggtgcatcaaaaggccaggatgtta
attaacctatggccagatcttaattgctgcaagcaagcctcatgggtgaa
ggtagaggtctgatccccagtgtgcaagcataggggccctacacaaaacc
atcccttaggctcatcacccagagaggtcttggccagctcctgtgtcatt
ttcctgtggggaagggaactaggacactgaaccttcatgcatcagacatg
ccctccacaggatgccaacagcaagctatcctctgtgcagtgcttagctt
cgcacccatggcataagcagcattattcctttaaagcggcaaatcgaatc
tgaggagaatggtcccgcctccactgcagcaaaagcctatgctaccatgg
cgaaaggtgcgggcccgccatctctgcaccttaacaaatggtgccaaaca
ccaaaacatcaccacactattacaaggctcattcccatgggctctcatcc
cctgctcaactctctgaacaaggtaataaatggccgaaagggctcatcct
taaggaaattcgaggatcataaaggacacgtaaaaaatggaaagtgtact
agtgctcga
gaattcaacctctgagtcccagacagtagaagagcatggactcccacaaa
ttttcctctgacaatcacatgaatgctgtaacatgtgtggtgtgcaagca
tgcatacacacacacacacacacacacacacacacacacacacacacaca
cacaaatacatttgaaagtgtgatatagtactaaataaatatatttcctg
cagtagagcaattctgcctcaaaattcatgtttgtttagcaaatctgcct
cttcaacacacagtcctgctccagctcctgtacagagatgaaaaagtaga
ttacctccctcctctgctcttgcctgtgagagttcagacattcctacagc
cttaaaatttctacttcctggagttggatccaatatctctctgaagaaca
ttaatattcacaagtccatgtatgattcatgcctcagcatgtccatacac
tctaaggtggaacaagcagtccttgaaagcatgaatcctacattccatgg
aggttcaacgtgtatcattctactctccgaatgcactctcttgaacattc
attcaaagaaaggatttgtaactaaaagtacattcttgattttgcatacc
tcctgtatcatagctggccctaaatacaaagattttactgagtaacagtt
tgggaagcacagacaaccatcttgtggggtacccaaagtgtgacaacctg
gatgccacatgacacctgtatctctggggaccgtaggctcttgccttcag
agctgggctttaataaaattctcacaagcagatgatctactgcgtggaca
caatgaaacacaaaagattttcccatgacatttttcatttgtctcaagta
tttaccttattatttatgtgcacgcatatgtgtaaattgtatgcatggga
tgaggtgcactgcatgtgtgtgaagtgggatggcaacttcaagtctattc
tttagtgcacgccaccatttttgttgtgattgcaacaaggatgggttaac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17159856_17160862
seq2: B6Ng01-165C12.g_70_1070

seq1  GAATTCAACCTCTGAGTCCCAGACAGTAGAAGAGCATGGACTCCCACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTCTGAGTCCCAGACAGTAGAAGAGCATGGACTCCCACAAA  50

seq1  TTTTCCTCTGACAATCACATGAATGCTGTAACATGTGTGGTGTGCAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTGACAATCACATGAATGCTGTAACATGTGTGGTGTGCAAGCA  100

seq1  TGCATACACACACACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACACACACACACACACACACACACACACACACACACACACACACA  150

seq1  CACAAATACATTTGAAAGTGTGATATAGTACTAAATAAATATATTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATACATTTGAAAGTGTGATATAGTACTAAATAAATATATTTCCTG  200

seq1  CAGTAGAGCAATTCTGCCTCAAAATTCATGTTTGTTTAGCAAATCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGCAATTCTGCCTCAAAATTCATGTTTGTTTAGCAAATCTGCCT  250

seq1  CTTCAACACACAGTCCTGCTCCAGCTCCTGTACAGAGATGAAAAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACACACAGTCCTGCTCCAGCTCCTGTACAGAGATGAAAAAGTAGA  300

seq1  TTACCTCCCTCCTCTGCTCTTGCCTGTGAGAGTTCAGACATTCCTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCCCTCCTCTGCTCTTGCCTGTGAGAGTTCAGACATTCCTACAGC  350

seq1  CTTAAAATTTCTACTTCCTGGAGTTGGATCCAATATCTCTCTGAAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTTCTACTTCCTGGAGTTGGATCCAATATCTCTCTGAAGAACA  400

seq1  TTAATATTCACAAGTCCATGTATGATTCATGCCTCAGCATGTCCATACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTCACAAGTCCATGTATGATTCATGCCTCAGCATGTCCATACAC  450

seq1  TCTAAGGTGGAACAAGCAGTCCTTGAAAGCATGAATCCTACATTCCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTGGAACAAGCAGTCCTTGAAAGCATGAATCCTACATTCCATGG  500

seq1  AGGTTCAACGTGTATCATTCTACTCTCCGAATGCACTCTCTTGAACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAACGTGTATCATTCTACTCTCCGAATGCACTCTCTTGAACATTC  550

seq1  ATTCAAAGAAAGGATTTGTAACTAAAAGTACATTCTTGATTTTGCATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGAAAGGATTTGTAACTAAAAGTACATTCTTGATTTTGCATACC  600

seq1  TCCTGTATCATAGCTGGCCCTAAATACAAAGATTTTACTGAGTAACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATCATAGCTGGCCCTAAATACAAAGATTTTACTGAGTAACAGTT  650

seq1  TGGGAAGCACAGACAACCATCTTGTGGGGTACCCAAAGTGTGACAACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCACAGACAACCATCTTGTGGGGTACCCAAAGTGTGACAACCTG  700

seq1  GATGCCACATGACACCTGTATCTCTGGGGACCGTAGGCTCTTGCCTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCACATGACACCTGTATCTCTGGGGACCGTAGGCTCTTGCCTTCAG  750

seq1  AGCTGGGCTTTAATAAAATTCTCACAAGCAGATGATCTACTGCGTGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCTTTAATAAAATTCTCACAAGCAGATGATCTACTGCGTGGACA  800

seq1  CAATGAAACACAAAAGAATTTCCCATGACATTTTTCATTTGTACTCAAGT  850
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  CAATGAAACACAAAAGATTTTCCCATGACATTTTTCATTTGT-CTCAAGT  849

seq1  ATTTACCTTATTATTTTATGTGCACGCATATGTGTAAATTGTATGCATGG  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTTATTA-TTTATGTGCACGCATATGTGTAAATTGTATGCATGG  898

seq1  GATGAGGTGCACATGCATGTGTGTGAAAGTGGGATGGCAACTTCAAGTCT  950
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GATGAGGTGCAC-TGCATGTGTGTG-AAGTGGGATGGCAACTTCAAGTCT  946

seq1  ATTCCTTTAGTGCACGCCACCATTTTTGTTGTTGATTGCAACAAGGATGG  1000
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATT-CTTTAGTGCACGCCACCATTTTTGTTG-TGATTGCAACAAGGATGG  994

seq1  TTTAACA  1007
       ||||||
seq2  GTTAACA  1001