BAC Information

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BAC

Clone NameB6Ng01-165C17
Chromosome8 (Build37)
Map Location 33,983,355 - 33,984,539
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C17.bB6Ng01-165C17.g
ACCDH957300DH957301
length1,1811,131
definitionDH957300|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C17, 5' end.DH957301|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaccatgagacaggggctgagtccttctttctctctttatcat
tataatggtttgggcaggaagatgatactgtcagtccttttatgggtaac
agaagcaatgcagaaacaaagtgtcaagaagaagatcatttgatctgact
cttcaaattgctgtacaaagcctccttactggcttcatagtacaggacat
gctgtttgggattagctaggcatggaccactttctccccgcccctcatga
gctcttccagtgcaaaaagttcagtgatatttataaatcatggctcttca
acctatttcttaaattatacctttcctttggaatctagatttatatatca
aatgacttactagataacctatatatccaacaagcaattcacagtaaaca
tatcaaagagtgtctctttctcctgctaggacatcaatgcatctatttat
taataatgaaactatgatcaccacagttgctacttctattctcagtggtc
ccttgatgagccaagcattataatatataaaagtgtgttgatcctcagat
ttttcttactccccaaattctgtcgtctctgaaccaattcttattctgat
aataacaacttcttatctttgttttctcctccaacaaaaaaatagtcttt
cctactgatatgagtgactcttcaaaaccaaaaagaacgcacaatgcccc
tattgaaagctcttgagttgttatcacaataaaatattctttataataac
acaagatgtctttcattcccccccaccccacccccctaccgcaaagtact
taaattaatagaaaattggatcaaattttattttgtgtgttatgggtatt
ttgcatgcagctgcaatgtttgtaaaggccagaagagggcattgggtgcc
ctgaagctggagttgcttatagttttgagctgccatgtgtgggctctgaa
tccaacctggggccactgggaaaagtagccagtgctcttaaccacggagt
catctctctgcagcctcattctcaaggagtttattctggttcattctcct
gctaaagcttggtgcatggatactagcattgtcctcctgttgcaggtagc
agtaacgttcaatgcttatgcacccccaatgtttctttctcgaatcgcct
ggtttcttgccattttgtgtactgtggctcc
gaattctctatttagctctgtacccaatttttaattgagttatttagtta
gttggagtctaacttcttgagttctttatatattttggatattagccctc
tgttggatgtaggagtagtgaagatctttccccaatctttaggcagctat
tttgtcctattgacagtgtcctttgccttacagaagctttctagtgtcat
gaggggcccacttagcaattgttgatcttagtacctgagctgttggtatt
ctgttcaggaaggtatgtcctgcacccatgccttcaaggttattccccac
tttatctcgtattaaatttattgtatttaggtttatcttgaggtatttga
tctatttgtacttgagttttgtgcaacaatttgttgaagaagctttcttt
ttccattgtatggtttttagcttctttgccaaagatcaaatgtcccaaga
tgtgtgggttcacttctggaccttcaattctatcccatttgtcaacctgt
ctgtttctgtaccaataccatgcagtttttttttgttttttttttctcat
ctatattttattatttcacttttttccccatttttattaggtatttagct
catttacatttaccataccatgcagcttttaatcactgtttatctataat
aaaacttgaggtcagagatggtgattcctccaaaagttcttttagtgttc
atgattgttttggctttcctggattttttttttgtttttccatatgaagt
tgaaaattacactttcaaggcctgtaaaaaaaaattgtgttggaaatttg
gatgggaatttcactgaatctgtagattgctttctagacagatgccactt
ataactgaatttaggatcaggtaaactatctaaatagtccaataacctgt
aatgaaacagatgcagtcattaaagacttccgacaaaaaaaaaaagccct
gattaagaaattgaagagattttagagatgaaaaaaattcttctatgcct
catggatcaggtaggaattatatagtgaaattgtccatcttaccaggttt
tgtgttttttaaggaattccggtgtctatgaacatggtggcctttgcact
catattgggttccctttagcctttaactcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_33983355_33984539
seq2: B6Ng01-165C17.b_43_1223 (reverse)

seq1  GGAGCAACAGTACACAAAATGCACAGAAAACCAGCTGATTCTGAGAAAGA  50
      ||||| |||||||||||||||  ||  |||||||  ||||| ||||||||
seq2  GGAGCCACAGTACACAAAATG-GCAAGAAACCAGGCGATTC-GAGAAAGA  48

seq1  AACATGTGCGGGTGCATAAGCATGGAACGTTACTGCTACCTGCACAGGGA  100
      ||||| || |||||||||||||| ||||||||||||||||||||   |||
seq2  AACAT-TGGGGGTGCATAAGCATTGAACGTTACTGCTACCTGCAACAGGA  97

seq1  GAGCAATGCTAGTATCATGGCACCAAGCTCTAGGCAGGAGAATGAACCAG  150
      |  |||||||||||||   |||||||||| || |||||||||||||||||
seq2  GGACAATGCTAGTATCCATGCACCAAGCTTTA-GCAGGAGAATGAACCAG  146

seq1  -ATAAACTCCTTGAGAAATGAGGCTGCAGAGAGATGACTCCGTGGTTAAG  199
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATAAACTCCTTGAG-AATGAGGCTGCAGAGAGATGACTCCGTGGTTAAG  195

seq1  AGCACTGGCTACTTTTCCCAGTGGCCCCAGGTTGGATTCAGAGCCCACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCTACTTTTCCCAGTGGCCCCAGGTTGGATTCAGAGCCCACAC  245

seq1  ATGGCAGCTCAAAACTATAAGCAACTCCAGCTTCAGGGCACCCAATGCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTCAAAACTATAAGCAACTCCAGCTTCAGGGCACCCAATGCCC  295

seq1  TCTTCTGGCCTTTACAAACATTGCAGCTGCATGCAAAATACCCATAACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCCTTTACAAACATTGCAGCTGCATGCAAAATACCCATAACAC  345

seq1  ACAAAATAAAATTTGATCCAATTTTCTATTAATTTAAGTACTTTGCGGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAATTTGATCCAATTTTCTATTAATTTAAGTACTTTGCGGTA  395

seq1  GGGGGGTGGGGTGGGGGGGAATGAAAGACATCTTGTGTTATTATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGGGTGGGGGGGAATGAAAGACATCTTGTGTTATTATAAAGAA  445

seq1  TATTTTATTGTGATAACAACTCAAGAGCTTTCAATAGGGGCATTGTGCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTGTGATAACAACTCAAGAGCTTTCAATAGGGGCATTGTGCGT  495

seq1  TCTTTTTGGTTTTGAAGAGTCACTCATATCAGTAGGAAAGACTATTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGGTTTTGAAGAGTCACTCATATCAGTAGGAAAGACTATTTTTT  545

seq1  TGTTGGAGGAGAAAACAAAGATAAGAAGTTGTTATTATCAGAATAAGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGGAGAAAACAAAGATAAGAAGTTGTTATTATCAGAATAAGAAT  595

seq1  TGGTTCAGAGACGACAGAATTTGGGGAGTAAGAAAAATCTGAGGATCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGAGACGACAGAATTTGGGGAGTAAGAAAAATCTGAGGATCAAC  645

seq1  ACACTTTTATATATTATAATGCTTGGCTCATCAAGGGACCACTGAGAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTATATATTATAATGCTTGGCTCATCAAGGGACCACTGAGAATA  695

seq1  GAAGTAGCAACTGTGGTGATCATAGTTTCATTATTAATAAATAGATGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCAACTGTGGTGATCATAGTTTCATTATTAATAAATAGATGCAT  745

seq1  TGATGTCCTAGCAGGAGAAAGAGACACTCTTTGATATGTTTACTGTGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCTAGCAGGAGAAAGAGACACTCTTTGATATGTTTACTGTGAAT  795

seq1  TGCTTGTTGGATATATAGGTTATCTAGTAAGTCATTTGATATATAAATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTGGATATATAGGTTATCTAGTAAGTCATTTGATATATAAATCT  845

seq1  AGATTCCAAAGGAAAGGTATAATTTAAGAAATAGGTTGAAGAGCCATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAAAGGAAAGGTATAATTTAAGAAATAGGTTGAAGAGCCATGAT  895

seq1  TTATAAATATCACTGAACTTTTTGCACTGGAAGAGCTCATGAGGGGCGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATATCACTGAACTTTTTGCACTGGAAGAGCTCATGAGGGGCGGG  945

seq1  GAGAAAGTGGTCCATGCCTAGCTAATCCCAAACAGCATGTCCTGTACTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGGTCCATGCCTAGCTAATCCCAAACAGCATGTCCTGTACTAT  995

seq1  GAAGCCAGTAAGGAGGCTTTGTACAGCAATTTGAAGAGTCAGATCAAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTAAGGAGGCTTTGTACAGCAATTTGAAGAGTCAGATCAAATG  1045

seq1  ATCTTCTTCTTGACACTTTGTTTCTGCATTGCTTCTGTTACCCATAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTCTTGACACTTTGTTTCTGCATTGCTTCTGTTACCCATAAAAG  1095

seq1  GACTGACAGTATCATCTTCCTGCCCAAACCATTATAATGATAAAGAGAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAGTATCATCTTCCTGCCCAAACCATTATAATGATAAAGAGAGA  1145

seq1  AAGAAGGACTCAGCCCCTGTCTCATGGTAGGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGACTCAGCCCCTGTCTCATGGTAGGAATTC  1181