BAC Information

Click to search

BAC

Clone NameB6Ng01-166B17
Chromosome8 (Build37)
Map Location 19,932,550 - 19,996,314
singlet/doubletdoublet
Overlap geneLOC100040599, EG665822, 6820431F20Rik
Upstream geneXkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166B17.bB6Ng01-166B17.g
ACCDH957973DH957974
length1,1171,069
definitionDH957973|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B17, 5' end.DH957974|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,932,550 - 19,933,670)(19,995,252 - 19,996,314)
sequence
gaattcttctcactgtgttacaaacatgcccatttttttggtttctttct
tgttgtttccatagtctaatttcctaacacttacattttaacacagtggt
tctcaacctatctgtcatgaccaattggaggaggtgcacagaacaggctc
acacaagttgcctaagaaagtctgaaaacactgataggacattacaactg
ataacattatcaaacctacagttatggagcagcaacaaaaacaattttat
ggttgggagtcaccacaacatgaggaactctattaaagaaagggtcacag
cattagggaggtagggaagcactacctaatacagggcctgacaaggagtg
aggatatgaaggagatgagggtactgttcaagctaggtttctcttccctg
acactacttgcagtactcaaccacaggcacacacatccaacattttcctt
cataacaagcaaatatgttacttatcaaatgggggagaattaacattagg
gatgctttttcttcataagtgttagttattggctctccccaagaacacac
ataaactccagaactccaaaaacccacaaaatccttttgcatcctcctct
gtggtctatgtaaagttttgctagattcttccagcaatgcaaaggtatag
agttaactttttgtttggttgtgaaattaactcttttcttttggggtgca
tgctttcaaatcaactttacttcttagtaatcatggggtattgacacata
aaaaataaaaactgtaattaaacatgaaatattttctaatacgcttatct
attttcaaattgctaggatatcatcaagatgtaaaaatatttaggctaga
ctagattaagagaaaatcatgaaatgagaaacaggatattgttcttccgg
gttgagactaagcttaattcattatgtgccaaattttctccatcttatat
aagatgatcattaacattgctaaaacctcttttggcattctttctcctcc
atgctgggggaacaaaatgcacagtttaccatttaaataaatgccagtta
attgccactgctatccttattcatagtacctgggtggaactccttataga
aacaatggatcacttag
gaattcctaatttatttttttttatttgctttcttaactcttacctaata
catattaattcatttttcatattcttacttcaaacaacagcttgtggagt
tattgtctatggtttcatggagatctttgcttttagtctttgggtaaact
aaggataaatgtgggatttcatctagactacttaaaatagtaaaaactct
agtcttctttttttctctcagggaaccaaggctagtgactaacagttgga
acccatgaaactaaccaataaggaacatgatgtctcataagtcctaggag
gttgcaaagaaacacctcaacactgggctcagtgatgctgcgtaacatag
cccaacacttcttccttgctctttgtatttacactataaatactgcttta
ttcactgagtgtaaaagcttccataagatccctagagatgtaagtaagca
tatttttatgaacagcatgtttaaatatacagaggtcatgaatatttcaa
tcctgaattaatcctgtttttcagtaattcaggacatgtgattgtccact
gaatctttgcacaaattttgttcatctttctaactcctctgttcactcac
tcaaaaaattaatagtacctatttaatgtgttcaaaaaagtttatgcctc
ctctgttaacctcatatgagctgaagagatgtttcttttcttttttttta
aagaaaaagatttatttggttttttatttttatgagtacgctagatctgt
cttcagacacacactagacgagtgtatcggataccactacagaagagtgt
gagccaccccgtggttgctgggaattgaacccaggacctccggcaaaaca
gtcagtgctcttaactgctgagcgatctctccaaccccatagtgatgttt
ctacacttatgtaggacttgatttctgaagctttttgctagagtcctcaa
gtatagattcagcatatgacttatcgaacaaaaggcttcttgtacttcga
gttctttacgatctttgagtctgagagggaaggacactgttactttgcta
tgctaggtttgaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19932550_19933670
seq2: B6Ng01-166B17.b_42_1158

seq1  GAATTCTTCTCACTGTGTTACAAACATGCCCATTTTTTTGGTTTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCACTGTGTTACAAACATGCCCATTTTTTTGGTTTCTTTCT  50

seq1  TGTTGTTTCCATAGTCTAATTTCCTAACACTTACATTTTAACACAGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTCCATAGTCTAATTTCCTAACACTTACATTTTAACACAGTGGT  100

seq1  TCTCAACCTATCTGTCATGACCAATTGGAGGAGGTGCACAGAACAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCTATCTGTCATGACCAATTGGAGGAGGTGCACAGAACAGGCTC  150

seq1  ACACAAGTTGCCTAAGAAAGTCTGAAAACACTGATAGGACATTACAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTGCCTAAGAAAGTCTGAAAACACTGATAGGACATTACAACTG  200

seq1  ATAACATTATCAAACCTACAGTTATGGAGCAGCAACAAAAACAATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTATCAAACCTACAGTTATGGAGCAGCAACAAAAACAATTTTAT  250

seq1  GGTTGGGAGTCACCACAACATGAGGAACTCTATTAAAGAAAGGGTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAGTCACCACAACATGAGGAACTCTATTAAAGAAAGGGTCACAG  300

seq1  CATTAGGGAGGTAGGGAAGCACTACCTAATACAGAGCCTGACAAGGAGTG  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATTAGGGAGGTAGGGAAGCACTACCTAATACAGGGCCTGACAAGGAGTG  350

seq1  AGGATATGAAGGAGATGAGGGGACTGTTCAAGCTAGGTTTCTCTTCCCTG  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGATATGAAGGAGATGAGGGTACTGTTCAAGCTAGGTTTCTCTTCCCTG  400

seq1  ACACTACTTGCAGTACTCAACCACAGGCACACACATCCAACATTTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTTGCAGTACTCAACCACAGGCACACACATCCAACATTTTCCTT  450

seq1  CATAACAAGCAAATATGTTACTTATCAAATGGGGGAGAATTAACATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAAGCAAATATGTTACTTATCAAATGGGGGAGAATTAACATTAGG  500

seq1  GATGCTTTTTCTTCATAAGTGTTAGTTATTGGCTCTCCCCAAGAACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTTTCTTCATAAGTGTTAGTTATTGGCTCTCCCCAAGAACACAC  550

seq1  ATAAACTCCAGAACTCCAAAAACCCACAAAATCCTTTTGCATCCTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCCAGAACTCCAAAAACCCACAAAATCCTTTTGCATCCTCCTCT  600

seq1  GTGGTCTATGTAAAGTTTTGCTAGATTCTTCCAGCAATGCAAAGGTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTATGTAAAGTTTTGCTAGATTCTTCCAGCAATGCAAAGGTATAG  650

seq1  AGTTAACTTTTTGTTTGGTTGTGAAATTAACTCTTTTCTTTTGGGGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTTTTTGTTTGGTTGTGAAATTAACTCTTTTCTTTTGGGGTGCA  700

seq1  TGCTTTCAAATCAACTTTACTTCTTAGTAATCATGGGGTATTGACACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAAATCAACTTTACTTCTTAGTAATCATGGGGTATTGACACATA  750

seq1  AAAAATAAAAACTGTAATTAAACATGAAATATTTTCTAATACGCTTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAACTGTAATTAAACATGAAATATTTTCTAATACGCTTATCT  800

seq1  ATTTTCAAATTGCTAGGATATCATCAAGATGTAAAAATATTTAGGCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAATTGCTAGGATATCATCAAGATGTAAAAATATTTAGGCTAGA  850

seq1  CTAGATTAAGAGAAAATCATGAAATGAGAAACAGGATATTGTTCTTCCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTAAGAGAAAATCATGAAATGAGAAACAGGATATTGTTCTTCCGG  900

seq1  GTTGAGACTAAGCTTAATTCATTATGTGCCAAATTTTCTCCATCTTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGACTAAGCTTAATTCATTATGTGCCAAATTTTCTCCATCTTATAT  950

seq1  AAGATGATCATTAACATTGCTAAAACCTCTTTTGGCATTCTTTCTCCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATCATTAACATTGCTAAAACCTCTTTTGGCATTCTTTCTCCTCC  1000

seq1  ATTGCTGGGGGGAACAAAATGCACAGTTTACCATTTTAAATAAATGCCAG  1050
      | |||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  A-TGCT-GGGGGAACAAAATGCACAGTTTACCA-TTTAAATAAATGCCAG  1047

seq1  TTAAATTGCCACTGCTATCCTTA-TCATAGTACCT--GTGGAACTACTTT  1097
      || |||||||||||||||||||| |||||||||||  |||||||| | ||
seq2  TT-AATTGCCACTGCTATCCTTATTCATAGTACCTGGGTGGAACT-CCTT  1095

seq1  ATAGAAACACATTGGATCACTTAG  1121
      ||||||  ||| ||||||||||||
seq2  ATAGAA--ACAATGGATCACTTAG  1117

seq1: chr8_19995252_19996314
seq2: B6Ng01-166B17.g_65_1133 (reverse)

seq1  TTTTTTTTC--ACTCTGCAT-GC-AAGTAACAATGT-CTTTCCTCTCAGA  45
      |||||||||  ||   |||| || |||||||| ||| ||| |||||||||
seq2  TTTTTTTTCAAACCTAGCATAGCAAAGTAACAGTGTCCTTCCCTCTCAGA  50

seq1  CACAAGAATCCTGAAG-ACTGGAATGACAAG-AGCCTATTGTATGATAAG  93
      | |||  ||| | ||| ||| |||  ||||| ||||| ||||  ||||||
seq2  CTCAAAGATCGTAAAGAACTCGAAGTACAAGAAGCCTTTTGTTCGATAAG  100

seq1  TCATAT-CTGAATCTATACTTCAGGACTTCTAGCAAAAAGCTTCAGAAAT  142
      |||||| |||||||||||||| ||||| ||||||||||||||||||||||
seq2  TCATATGCTGAATCTATACTTGAGGAC-TCTAGCAAAAAGCTTCAGAAAT  149

seq1  CAAGTCCTACATAAACTAGTAGAAACATCACTATGGGGTTGGAGAGATGG  192
      ||||||||||||||    |||||||||||||||||||||||||||||| |
seq2  CAAGTCCTACATAA--GTGTAGAAACATCACTATGGGGTTGGAGAGATCG  197

seq1  CTCAGCAGTTAAGAGCACTGACTGTTCTGCCGGAGGTCCTGGGTTCAATT  242
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAGCAGTTAAGAGCACTGACTGTTTTGCCGGAGGTCCTGGGTTCAATT  247

seq1  CCCAGCAACCACATGGTGGCTCACAATCATCTGTAGTGGGATCCGATGCA  292
      ||||||||||||  ||||||||||| || |||||||||| ||||||| ||
seq2  CCCAGCAACCACGGGGTGGCTCACACTCTTCTGTAGTGGTATCCGATACA  297

seq1  CTCGTCTAGTGTGTGTCTGAAGACAGCTGCAGTGTACTCATAAAAAT-AA  341
      |||||||||||||||||||||||||| |  || |||||||||||||| ||
seq2  CTCGTCTAGTGTGTGTCTGAAGACAGATCTAGCGTACTCATAAAAATAAA  347

seq1  AAACTAAATAAATCTTTTTTTTTTAAAAAAAAGAAAAGAAACATCTCTTC  391
      |||| |||||||||||||| ||| ||||||||||||||||||||||||||
seq2  AAACCAAATAAATCTTTTTCTTTAAAAAAAAAGAAAAGAAACATCTCTTC  397

seq1  AGCTCATATTAGGTTTACAGAGGAGGCATAAACTTTTTTGAACACATTAA  441
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTCATATGAGGTTAACAGAGGAGGCATAAACTTTTTTGAACACATTAA  447

seq1  ATAGGTACTATTAATTTTTTGAGTGAGTGAACAGAGGAGTTAGAAAGATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTACTATTAATTTTTTGAGTGAGTGAACAGAGGAGTTAGAAAGATG  497

seq1  AACAAAATTTGTGCAAAGATTCAGTGGACAATCACATGTCCTGAATTACT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTTGTGCAAAGATTCAGTGGACAATCACATGTCCTGAATTACT  547

seq1  GAAAAACAGGATAAATTCAGGATTGAAATATTCATGACCTCTGTATATTT  591
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAGGATTAATTCAGGATTGAAATATTCATGACCTCTGTATATTT  597

seq1  AAACATGATGTTCATAAAAATATGCTTACTTACATCTCTAGGGATCTTAT  641
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTGTTCATAAAAATATGCTTACTTACATCTCTAGGGATCTTAT  647

seq1  GGAAGCTTTTACACTCAGTCAATAAAGCAGTATTTATAGTGTAAATACAA  691
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGAAGCTTTTACACTCAGTGAATAAAGCAGTATTTATAGTGTAAATACAA  697

seq1  AGAGCAAGGAAGAAGTGCTGGGCTATGTTACGCAGCATCACTGAGCCCAG  741
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGCAAGGAAGAAGTGTTGGGCTATGTTACGCAGCATCACTGAGCCCAG  747

seq1  TGTTGAGGTGTTTCTTTGCAACATCCTAGGACTTATGAGACATCATGTTC  791
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTGAGGTGTTTCTTTGCAACCTCCTAGGACTTATGAGACATCATGTTC  797

seq1  CTTATTGGTTAGTTTCATGGGTTCCAACTGTTAGTCACTAGCCTTGGTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGGTTAGTTTCATGGGTTCCAACTGTTAGTCACTAGCCTTGGTTC  847

seq1  CCTGAGAGAAAAAAAGAAGACTAGAGTTTTTACTATTTTAAGTAGTCTAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGAAAAAAAGAAGACTAGAGTTTTTACTATTTTAAGTAGTCTAG  897

seq1  ATGAAATCCCACATTTATCCTTAGTTTACCCAAAGACTAAAAGCAAAGAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCCCACATTTATCCTTAGTTTACCCAAAGACTAAAAGCAAAGAT  947

seq1  CTCCATGAAACCATAGACAATAACTCCACAAGCTGTTGTTTGAAGTAAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAAACCATAGACAATAACTCCACAAGCTGTTGTTTGAAGTAAGA  997

seq1  ATATGAAAAATGAATTAATATGTATTAGGTAAGAGTTAAGAAAGCAAATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAAATGAATTAATATGTATTAGGTAAGAGTTAAGAAAGCAAATA  1047

seq1  AAAAATAATAAATTAGGAATTC  1063
      ||||| ||||||||||||||||
seq2  AAAAAAAATAAATTAGGAATTC  1069