BAC Information

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BAC

Clone NameB6Ng01-166N04
Chromosome8 (Build37)
Map Location 54,646,171 - 54,647,216
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676688, Aga
Downstream geneNeil3, LOC100040107, Vegfc, Spcs3, Asb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N04.bB6Ng01-166N04.g
ACCDH958490DH958491
length1,1171,138
definitionDH958490|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N04, 5' end.DH958491|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagaagatacactgggggagttcagcttgcgggttcactcctg
gctgcctctttagctcatatttgtaagctcttttgtgtgctaagaccacc
tgccttaggaatggtacatcccatactgggtatagtcctcctacatcagt
taataatgtttatggtccctcagagacatgctcacagatcgacctgatct
atgtagttccccaacttagggtttttttttttcccctcagatgaatcaag
gccttgtcaaattgagaattaaggctaataaagacagtatctcaggatac
ttctgcttctctgacaaaacatgtcttagagtaatttatgaaaattggaa
acacacacacactgattatagttctgcatgttgcgaagttagaggtcaag
tcagccagtaggattagtgtctgctaagagccggaactcagcatacaagg
cagcatgtgttagcccgtcctaacaaagaggaatggcattgaactctctt
cagcttcctttaaatgacagtgatcacacagggacctctaagacaccatc
acttctcagaaggtaccacttcgttgttcttctgaattctgacttcgcat
tggatacttgtcaagtttacccttctgttttagtggtcagttagggaaat
ccatattttgagatgtatccaaggtcataaggataaacagaagtcaagca
gtttatcagagactctcagtcaccctctcagatacttcactgacaataat
cagctaaactactgacaggaatttgggggaaggtaagcactacatagaac
aaagcaaggtttaattttcccatctccacctcaccatttagcattctcca
aaactcttttaaacaccgttttatgttttcagaggtagtcagtcaaggac
aaaaatctcagagcaaattctgactcaacttcaaatcagaataatttaca
acagctgtcatttgcatcttctttcacagaggagtctcaaacgtctagtt
agaccactgtagtttcaggtctgcgacattacagctcttctccactgtgc
agaaaatcatatttaattctcagttcttttgccttaccctgtaagggtga
ggggttggagtcaatct
gaattcccgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atacctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaatttgtctgaagttctctctttgttggatct
ttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttggg
tagagtaccctctacttctatcttgtgaaaaattttgtgcagaactggaa
ttagatcttctttgaaggtctgatagaactctgcactaaacccgtctggt
cctgggctttttttggctgggaaactatttataactgcttctatttcttt
aggggatatgggactgtttagaaggtcaacttgatcctgattcaactttg
gtacctggtatctgtccagaaatttgtccatttcatccaggttttccagt
tttgttgagtatagccttttgtagaaggatctgatggtgttttggatttc
ttcaggttctgttgttatgtgtcccttttcagttctgattttgttaatta
ggattttgtccctgtgccctctagtgagtctagctaatggtttatctatc
ttgttgattttctcaaagaaccaactcctcgtttgggttaattctttgag
tagttcttcttgtttccacttggtgattttcacccctgagtttgattatt
tcctgccgtctactcctcttggtgatttgcttcctttttcctagagcttt
agatgtgtgacagctgctagtatgtgctctctccgtttcttctgagcact
cagagctatgagtttccctctagaatgcttcatgtgttcaagtttgggta
cgttgggcttcattcattgactctagagccttaatttcttcttatcttct
tgacagacatgaaagaagtgtgtcagtcacggaggtggctctaaggttat
ctcggtgagctcctagtctgtgtgtcactggagactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54646171_54647216
seq2: B6Ng01-166N04.b_122_1162 (reverse)

seq1  AGATTGAACTCCAA-CCCTCACATTTACAGGGTAAAGGCAAAAAGAACTG  49
      |||||| ||||||| |||||||  ||||||||| ||||| ||||||||||
seq2  AGATTG-ACTCCAACCCCTCACCCTTACAGGGT-AAGGC-AAAAGAACTG  47

seq1  AGAA-TAAATATTGATTGTCTGCACAGTGGAG-AGAGCTGTAATGTCGCA  97
      |||| |||||| ||||| |||||||||||||| |||||||||||||||||
seq2  AGAATTAAATA-TGATTTTCTGCACAGTGGAGAAGAGCTGTAATGTCGCA  96

seq1  GACCTGAAACTACAGTGGTCTAACTAGACGTTTGAGACTCCTCTGTTGAA  147
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACCTGAAACTACAGTGGTCTAACTAGACGTTTGAGACTCCTCTG-TGAA  145

seq1  AGAAGATGCAAAAATGACAGCTGTTGTAAATTATTCTGATTTTGAAGTTG  197
      |||||||||  |||||||||||||||||||||||||||| ||||||||||
seq2  AGAAGATGC--AAATGACAGCTGTTGTAAATTATTCTGA-TTTGAAGTTG  192

seq1  AGTCAGAATTTGCTCTGAGATTTTTGTCCTTGACTGACTACCTCTGAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATTTGCTCTGAGATTTTTGTCCTTGACTGACTACCTCTGAAAA  242

seq1  CATAAAACGGTGTTTAAAAGAGTTTTGGAGAATGCTAAATGGTGAGGTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACGGTGTTTAAAAGAGTTTTGGAGAATGCTAAATGGTGAGGTGG  292

seq1  AGATGGGAAAATTAAACCTTGCTTTGTTCTATGTAGTGCTTACCTTCCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGAAAATTAAACCTTGCTTTGTTCTATGTAGTGCTTACCTTCCCC  342

seq1  CAAATTCCTGTCAGTAGTTTAGCTGATTATTGTCAGTGAAGTATCTGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTGTCAGTAGTTTAGCTGATTATTGTCAGTGAAGTATCTGAGA  392

seq1  GGGTGACTGAGAGTCTCTGATAAACTGCTTGACTTCTGTTTATCCTTATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACTGAGAGTCTCTGATAAACTGCTTGACTTCTGTTTATCCTTATG  442

seq1  ACCTTGGATACATCTCAAAATATGGATTTCCCTAACTGACCACTAAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGATACATCTCAAAATATGGATTTCCCTAACTGACCACTAAAACA  492

seq1  GAAGGGTAAACTTGACAAGTATCCAATGCGAAGTCAGAATTCAGAAGAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTAAACTTGACAAGTATCCAATGCGAAGTCAGAATTCAGAAGAAC  542

seq1  AACGAAGTGGTACCTTCTGAGAAGTGATGGTGTCTTAGAGGTCCCTGTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAGTGGTACCTTCTGAGAAGTGATGGTGTCTTAGAGGTCCCTGTGT  592

seq1  GATCACTGTCATTTAAAGGAAGCTGAAGAGAGTTCAATGCCATTCCTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGTCATTTAAAGGAAGCTGAAGAGAGTTCAATGCCATTCCTCTT  642

seq1  TGTTAGGACGGGCTAACACATGCTGCCTTGTATGCTGAGTTCCGGCTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGACGGGCTAACACATGCTGCCTTGTATGCTGAGTTCCGGCTCTT  692

seq1  AGCAGACACTAATCCTACTGGCTGACTTGACCTCTAACTTCGCAACATGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACACTAATCCTACTGGCTGACTTGACCTCTAACTTCGCAACATGC  742

seq1  AGAACTATAATCAGTGTGTGTGTGTTTCCAATTTTCATAAATTACTCTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATAATCAGTGTGTGTGTGTTTCCAATTTTCATAAATTACTCTAA  792

seq1  GACATGTTTTGTCAGAGAAGCAGAAGTATCCTGAGATACTGTCTTTATTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTTGTCAGAGAAGCAGAAGTATCCTGAGATACTGTCTTTATTA  842

seq1  GCCTTAATTCTCAATTTGACAAGGCCTTGATTCATCTGAGGGGAAAAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATTCTCAATTTGACAAGGCCTTGATTCATCTGAGGGGAAAAAAA  892

seq1  AAAACCCTAAGTTGGGGAACTACATAGATCAGGTCGATCTGTGAGCATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTAAGTTGGGGAACTACATAGATCAGGTCGATCTGTGAGCATGT  942

seq1  CTCTGAGGGACCATAAACATTATTAACTGATGTAGGAGGACTATACCCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGGACCATAAACATTATTAACTGATGTAGGAGGACTATACCCAG  992

seq1  TATGGGATGTACCATTCCTAAGGCAGGTGGTCTTAGCACACAAAAGAGC  1046
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATGTACCATTCCTAAGGCAGGTGGTCTTAGCACACAAAAGAGC  1041