BAC Information

Click to search

BAC

Clone NameB6Ng01-167A21
Chromosome8 (Build37)
Map Location 115,936,076 - 115,937,155
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167A21.bB6Ng01-167A21.g
ACCDH958656DH958657
length8281,057
definitionDH958656|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A21, 5' end.DH958657|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatccagtggctgtatttctttatctttgctactccccaataacc
atacagagaaaccaaagctgcacctcaattctggacaggtaagagatcta
taataacccctatgctaatatggctacctcccagctccatcccatgatac
gtgcatattgctattgatctggctctttaggcttcagatggtttttattc
atgttatcttggaccttctcctccttgtgctgatctgaatcaatctctct
ctctctctctctctctctctctctctctctttctctcattcccctggctg
gtggaagcccagccctaattctctctctctctctctctctctctctctct
ctctctctctctctctctctcttttttactttcattctgtgatcaacatt
tattgtcaaggcctagaagtcacgttctattgtatacacaaacttgtaat
aggttactcttgatatgatcattgcaatgacttttcctcactgaaaaaat
ataggagggcatataatcagtatttgaataacaaaggagacctttacaca
gtgaacaaaagtatgacgacgacattatccaaatggaggaatgggcggga
tcataccacagtcctcagaaggaatacaactgtgtgtcaacccctaaagc
tttatatctgcggttccctgagccagtatacgtgggattttggaggataa
tcagcacagtgagccattcgagttagatcatcaggttctcatacatcccg
gtgttctgccaaaaactacgtataagggaatcgcttatctggctcttcac
ttccagttgcaacccctcctctcctctg

gaattcagctgtgatggtaaatggtcagagacaggcacaaaaaaaaaaaa
aaataataatgtgagagagtgcttactccttattgaatataaaaagtacc
ctcgggttggggatgtgaaaacactttcccagcatgcatggagacccgaa
ttctgccataaaccaggcacagtggctcagacctgtaattacaatgctag
gaagctgatgataggatcagaaatccaaggctagcctgggctaccgtgag
ctccccataatagcaaggtaagtcttcactagtgcgactttctatactca
acaaaaacactgaataccaaccagtagcttgcagaagtggagaaacagta
tcttggccaaaatataatttactttatacaggtagcgtctaaaaaaaaaa
aaatggtgaaatcatataaagccttccttgccctgatctgaaaccaagga
atcatcctttagattattggaaatcgcctgtcgctccatgaggctaatgt
tactctttatggcacataaagctgccttagcatcaggcttattgcagaag
gcagcttgaggagacatatttgccctgcttaagcctttaaaatcttataa
aaatagcaagagcgtgtcatctggctctactgaaataacaccgctaagaa
gagaaagcattgcgaggagccggaaaaacaaatgcctccccagaggttgg
ccctcgcattgcggaggagactctttgtcaaagctcttggggagttttat
gcggaaccagatggggcaaaattttccctttattgcctttacctctaatt
gatgggtctctggggagagcccatctcataaagtgcaggaaccgtttccc
tccatactcctgtgtgttcctttttgggaagtccatcccattgactggac
ggaatcaatgcattataatgagcaaatctctttgaggtcacctcgtctaa
atctagatggtgtcgtgctgagcggaaaatgcgctcatagctatgtgctg
atgactgtttcagaaggtgtgaaccttagagtaacgtttcgaagaaatag
gtgacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_115936076_115937155
seq2: B6Ng01-167A21.g_64_1120

seq1  GAATTCAGCTGTGATGGTAAATGGTCAGAGACAGGCACAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTGATGGTAAATGGTCAGAGACAGGCACAAAAAAAAAAAA  50

seq1  AAATAATAATGTGAGAGAGTGCTTACTCCTTATTGAATATAAAAAGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATGTGAGAGAGTGCTTACTCCTTATTGAATATAAAAAGTACC  100

seq1  CTCGGGTTGGGGATGTGAAAACACTTTCCCAGCATGCATGGAGACCCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTTGGGGATGTGAAAACACTTTCCCAGCATGCATGGAGACCCGAA  150

seq1  TTCTGCCATAAACCAGGCACAGTGGCTCAGACCTGTAATTACAATGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATAAACCAGGCACAGTGGCTCAGACCTGTAATTACAATGCTAG  200

seq1  GAAGCTGATGATAGGATCAGAAATCCAAGGCTAGCCTGGGCTACCGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGATGATAGGATCAGAAATCCAAGGCTAGCCTGGGCTACCGTGAG  250

seq1  CTCCCCATAATAGCAAGGTAAGTCTTCACTAGTGCGACTTTCTATACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATAATAGCAAGGTAAGTCTTCACTAGTGCGACTTTCTATACTCA  300

seq1  ACAAAAACACTGAATACCAACCAGTAGCTTGCAGAAGTGGAGAAACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACACTGAATACCAACCAGTAGCTTGCAGAAGTGGAGAAACAGTA  350

seq1  TCTTGGCCAAAATATAATTTACTTTATACAGGTAGCGTCTAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCAAAATATAATTTACTTTATACAGGTAGCGTCTAAAAAAAAAA  400

seq1  AAATGGTGAAATCATATAAAGCCTTCCTTGCCCTGATCTGAAACCAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGAAATCATATAAAGCCTTCCTTGCCCTGATCTGAAACCAAGGA  450

seq1  ATCATCCTTTAGATTATTGGAAATCGCCTGTCGCTCCATGAGGCTAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTTTAGATTATTGGAAATCGCCTGTCGCTCCATGAGGCTAATGT  500

seq1  TACTCTTTATGGCACATAAAGCTGCCTTAGCATCAGGCTTATTGCAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTATGGCACATAAAGCTGCCTTAGCATCAGGCTTATTGCAGAAG  550

seq1  GCAGCTTGAGGAGACATATTTGCCCTGCTTAAGCCTTTAAAATCTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTGAGGAGACATATTTGCCCTGCTTAAGCCTTTAAAATCTTATAA  600

seq1  AAATAGCAAGAGCGTGTCATCTGGCTCTACTGAAATAACACCGCTAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAAGAGCGTGTCATCTGGCTCTACTGAAATAACACCGCTAAGAA  650

seq1  GAGAAAGCATTGCGAGGAGCCGGAAAAACAAATGCCTCCCCAGAGGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCATTGCGAGGAGCCGGAAAAACAAATGCCTCCCCAGAGGTTGG  700

seq1  CCCTCGCATTGCGGAGGAGACTCTTTGTCAAAGCTCTTGGGGAGTTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGCATTGCGGAGGAGACTCTTTGTCAAAGCTCTTGGGGAGTTTTAT  750

seq1  GCGGAACCAGATGGGGCAAAATTTTCCCTTTATTGCCTTTACCTCTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAACCAGATGGGGCAAAATTTTCCCTTTATTGCCTTTACCTCTAATT  800

seq1  GATGGGTCTCTGGGGAGAGCCCATCTCATAAAGTGCAGGGAACCGTTTCC  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGGGTCTCTGGGGAGAGCCCATCTCATAAAGTGCA-GGAACCGTTTCC  849

seq1  CTCCATACTCCTGTGTGTTCCTTTTTTGGGAAGTCCATCCCATTGACTGG  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCCATACTCCTGTGTGTTCC-TTTTTGGGAAGTCCATCCCATTGACTGG  898

seq1  ACGGGAATCAATGCAATTATAATGAGCAAATCTCTTTGAAGGTCACCTCG  950
      || ||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  AC-GGAATCAATGC-ATTATAATGAGCAAATCTCTTTG-AGGTCACCTCG  945

seq1  TCTAAATTCTAGATGGGTGTCGTGCCTTGAGCGGAAAATGCGCCTCATAG  1000
      |||||| ||||||| ||||||||||  ||||||||||||||| |||||| 
seq2  TCTAAA-TCTAGAT-GGTGTCGTGC--TGAGCGGAAAATGCG-CTCATA-  989

seq1  GCTAATGTGCTTGAATGACTGTTTCAGAAAGTTGTGGAACCTTTAGGAGG  1050
      ||| |||||||   ||||||||||||| ||| ||| |||||||      |
seq2  GCT-ATGTGCT--GATGACTGTTTCAG-AAGGTGT-GAACCTT-----AG  1029

seq1  TGAAGCGTTGCTGAAGGAAATAGGTGACTA  1080
       | | |||| | ||| ||||||||||||||
seq2  AGTAACGTTTC-GAA-GAAATAGGTGACTA  1057


| Home | SequenceCutter | Blast | Download |