BAC Information

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BAC

Clone NameB6Ng01-167M04
Chromosome8 (Build37)
Map Location 87,514,598 - 87,515,715
singlet/doubletsinglet
Overlap geneHook2
Upstream genePrkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb
Downstream geneBest2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167M04.bB6Ng01-167M04.g
ACCDH959171DH959172
length1,2601,103
definitionDH959171|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M04, 5' end.DH959172|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggacgaaattcaaaacagtctatcagaggtaaagtggagagag
agagcaggagcaaagaggaaacgtggtgcaccaattaagcatacaggcct
ttccacgggtctcgaacccgaggaaaagatcatgtcagggaagaatacct
ggggagagtttggaaagaaggagaaggaaaaagagaagaaaaaagatcaa
tcagcggaggtttctaggagaaggagcctatacccgccactagatgagtt
taagcggctagctcttagtagctcagaatcagatgaaggacttagctcct
ctgaagaaacggacttggaggaggaagcagttcattataagggagaaagg
taccagcaagataaaatacaagctactcagtccagaaaaaggcaaaaagc
ggctggcgaaagccagcttgctgcttggcctccggactgtcggcttcagg
gtcctagtgcacctccgccctatgtgcagaggtaccattcagaatcttat
gtgcagaggtaccattcagaaccttatgtgcagagataccattcagactc
gttcattccaaaagaagaacagaggaaaatgcaacaggcatttccagttt
ttgagggagctgagggtaggcatgttcacgctccagtagagtatatacag
attaaggagcttgcagaagcagtctgcaattatggagtcagcgctaattt
cactatagcacaagtcgaaaggcttgcaaatcacgctatgactcctggtg
attggcagactgtagtaaaagctgcagcccccagtatgggaatgtatctt
gagtggaaagccttgtggcaggactcctgccagacgcaggcaaggtccaa
tgccaccatggaaggggaccaaagaacatggacgtttgaattgcttacag
gtcaggacagcatgctgctaaccaaacaaattatcattggggagtgtatg
ctcagatctcagctgccgctgttaaggcatggaagcactctctaggaagg
gggagacgagtggacatttgacaaaaatcacccagggttcacaggagtca
ttctcagatttgtggccagaatgatgaagcagcaggagatatttggtgga
tccgaggcacctatgctttattgacatctggttattggacaagctaccaa
ggatgcaatcacgcaatccaccctatggaaagatagtttccggactagtt
aagaggtgtgccgtggccttaagagaacgcttactcaatggcctgtgaat
agtggcagtc
tccggagccatgagtgtggacaaggccgagctatgcgggtctctgctcac
ctgggtaggtcggggggcggggctgggtcaggtgtgcgccctctcctctc
gtcctgtcttggtcttctttcctcggttttggacctggaaggaggaatag
atcgtaggcttgctgggccgttggactctgacctgaccacctgcgtctgt
cacgtgggcaggcctgagcgaaaagaccaggtgaggccacgcccctctgg
agggcacaggcctggtcacatgttagcagtggggaccaggtgactggtgg
taacgccctgacctaggtttgcagggtttgccaggataggtaaaatgaag
ccacgccccgtccttgcctaggcgtgtagaagtcacgcccccgaagatgt
gatatgttggtgctacaggctaatgcctttctaaccccgtgaaatgtctg
atggctggggaaaaagtctgcaattccaggtcctcaattttcctgttgcc
cttccgtcttccccctttagttgcagacgttccaagtttcacccccctgt
gccagtccccaggacctgagcagcggactcgccatagcccatgtgctgaa
tcagatgtgagtgtggcggctgagtgggaggatcctgaagggctccccag
cctgctcatcccatctttctgcccctagagacccttcctggttcaacaac
gaatggctccagggcatctcagaggactcaagccccagctggaggttgaa
ggtgacaggtggactcatgactagggaataactagaggacttaaggaggt
gaaggcaaagggaaagctagatacatgtcctgtgcgatggacaggcagtc
tttgtcaggaagagagccagatgtctggtgatcagcaagctatttttgtt
tatattgagcacccacaataggacaaaaaacttgccaccattcttatgat
gtgggcaaaagcacacacacacacatgttactttcagaggtgtgctggca
aatgcttgtatcccagctatggtggtgtgttaaacaggagggtggtaaca
tcatcatccgtcttcaaccttttaagcaaggatatagttggcaagagaat
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87514598_87515715
seq2: B6Ng01-167M04.g_76_1178

seq1  TCCGGAGCCATGAGTGTGGACAAGGCCGAGCTATGCGGGTCTCTGCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGCCATGAGTGTGGACAAGGCCGAGCTATGCGGGTCTCTGCTCAC  50

seq1  CTGGGTAGGTCGGGGGGCGGGGCTGGGTCAGGTGTGCGCCCTCTCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGGTCGGGGGGCGGGGCTGGGTCAGGTGTGCGCCCTCTCCTCTC  100

seq1  GTCCTGTCTTGGTCTTCTTTCCTCGGTTTTGGACCTGGAAGGAGGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCTTGGTCTTCTTTCCTCGGTTTTGGACCTGGAAGGAGGAATAG  150

seq1  ATCGTAGGCTTGCTGGGCCGTTGGACTCTGACCTGACCACCTGCGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAGGCTTGCTGGGCCGTTGGACTCTGACCTGACCACCTGCGTCTGT  200

seq1  CACGTGGGCAGGCCTGAGCGAAAAGACCAGGTGAGGCCACGCCCCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGGCAGGCCTGAGCGAAAAGACCAGGTGAGGCCACGCCCCTCTGG  250

seq1  AGGGCACAGGCCTGGTCACATGTTAGCAGTGGGGACCAGGTGACTGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGCCTGGTCACATGTTAGCAGTGGGGACCAGGTGACTGGTGG  300

seq1  TAACGCCCTGACCTAGGTTTGCAGGGTTTGCCAGGATAGGTAAAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCCCTGACCTAGGTTTGCAGGGTTTGCCAGGATAGGTAAAATGAAG  350

seq1  CCACGCCCCGTCCTTGCCTAGGCGTGTAGAAGTCACGCCCCCGAAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCCGTCCTTGCCTAGGCGTGTAGAAGTCACGCCCCCGAAGATGT  400

seq1  GATATGTTGGTGCTACAGGCTAATGCCTTTCTAACCCCGTGAAATGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTGGTGCTACAGGCTAATGCCTTTCTAACCCCGTGAAATGTCTG  450

seq1  ATGGCTGGGGAAAAAGTCTGCAATTCCAGGTCCTCAATTTTCCTGTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGGAAAAAGTCTGCAATTCCAGGTCCTCAATTTTCCTGTTGCC  500

seq1  CTTCCGTCTTCCCCCTTTAGTTGCAGACGTTCCAAGTTTCACCCCCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTCTTCCCCCTTTAGTTGCAGACGTTCCAAGTTTCACCCCCCTGT  550

seq1  GCCAGTCCCCAGGACCTGAGCAGCGGACTCGCCATAGCCCATGTGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCCCCAGGACCTGAGCAGCGGACTCGCCATAGCCCATGTGCTGAA  600

seq1  TCAGATGTGAGTGTGGCGGCTGAGTGGGAGGATCCTGAAGGGCTCCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTGAGTGTGGCGGCTGAGTGGGAGGATCCTGAAGGGCTCCCCAG  650

seq1  CCTGCTCATCCCATCTTTCTGCCCCTAGAGACCCTTCCTGGTTCAACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCATCCCATCTTTCTGCCCCTAGAGACCCTTCCTGGTTCAACAAC  700

seq1  GAATGGCTCCAGGGCATCTCAGAGGACTCAAGCCCCAGCTGGAGGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTCCAGGGCATCTCAGAGGACTCAAGCCCCAGCTGGAGGTTGAA  750

seq1  GGTGACAGGTGGACTCATGACTAGGGAATAACTAGAGGACTTAAGGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGGTGGACTCATGACTAGGGAATAACTAGAGGACTTAAGGAGGT  800

seq1  GAAGGCAAAGGGAAAGCTAGATACATGTCCTGTGCGATGGACAGGCAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAAGGGAAAGCTAGATACATGTCCTGTGCGATGGACAGGCAGTC  850

seq1  -TTGTCAGGAAGAGAGCCAGATGTCTGGTGATCAGCAAGCTATTTTTGTT  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGGAAGAGAGCCAGATGTCTGGTGATCAGCAAGCTATTTTTGTT  900

seq1  TATATTGAGCACCCACAATAGGACAAAAAAACTTGCCACCATTCTTATGA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATATTGAGCACCCACAATAGGAC-AAAAAACTTGCCACCATTCTTATGA  949

seq1  TGTGGGCAAAAGCACACACACAACACATGTTAACTTCCAAGAGGTGTGCT  999
      ||||||||||||||||||||| ||||||||||  |||  |||||||||||
seq2  TGTGGGCAAAAGCACACACAC-ACACATGTTACTTTC--AGAGGTGTGCT  996

seq1  GGCAAATGCTTGTAATCCCAGCTATGGTGGTGTGTTAATACAGGAGGGTG  1049
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GGCAAATGCTTGT-ATCCCAGCTATGGTGGTGTGTTAA-ACAGGAGGGTG  1044

seq1  GTAAACCATCCATCATCCCGTCTCAAAACCTTTAAAAGGCCAGGGATATA  1099
      ||||  ||| |||||| ||||||  || | |||||     || |||||||
seq2  GTAA--CAT-CATCAT-CCGTCTTCAACCTTTTAA----GCAAGGATATA  1086

seq1  GTTGGCAAAAGAGAATTTG  1118
      ||||||  |||||||||||
seq2  GTTGGC--AAGAGAATTTG  1103