BAC Information

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BAC

Clone NameB6Ng01-168D17
Chromosome8 (Build37)
Map Location 113,349,099 - 113,494,577
singlet/doubletdoublet
Overlap geneSf3b3, Cog4, Fuk, St3gal2
Upstream geneAp1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
Downstream geneDdx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168D17.bB6Ng01-168D17.g
ACCDH959524DH959525
length1,1151,013
definitionDH959524|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D17, 5' end.DH959525|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,349,099 - 113,350,222)(113,493,558 - 113,494,577)
sequence
gaattctttaccaaatattcactagaagatgaggatgaggtacaaaacag
gctatttggctttcaagagatttcacatctgtaatctgaattagatttcc
tagtttttgtccttaatctttaaaaaaggggccaaactgtcttgtttgtg
gacacttcagagtcccaattctctttcttgtgaatccatgcatgcttaag
atacatacactgacaacactgcctaagcacaacaacagaaccccacccca
aggaccataatggaagataacacagggccagcagaacaaaacaagtaaca
tacaggatccatctcgaaatagaccagctctcccccagtcagggcgatca
ccacttgtcgctggttcactgcacacttcacaatcgttttcttgccggga
gtcttccactcattaactcttttatctgctcgtatgtgtcggatgccatc
tggatacacctagaagtcagtcaaagaaaaacatctaactagcaatctga
ttgtcacccagaatggccctcacactggcacactgggaccacacaaatga
ggcactgcttgtttttgaaatgttcatgctttgccacctcagttgagaaa
ggtcccaagcccacatgttaatgataaagatgagaaaagcagtgataggg
aatgaccaacagggaggaaatgttaggcttcaaattttcctaactgccga
gttattcaaagcctgaaagggatgaattctcagtacccctttttatgttg
ataagacattagaccctcccctcacgttttctggaaggtgagaatgaaga
aacatgaattcaagcacaccacaaaacaagagaatgatgggcaaaggatg
agcaaaagacggacgtcaaagcacgctgaggaggtgcacgctcacctgca
ccagtgcatcatctcctaacacggagcaagacaaggttgcagtgttgccc
aagaagccagagtctgtcacgtcctccacagtctctccgatagatagcac
gagtgtgctattcacgaaagacacatgatgtagcatcaaactcatctgaa
aaaagaaaacgaagactgtaggaaaattcgaaattactagccattaggaa
ggagtgagactcaac
gaattcaaccccctactacctggtgcgccacggaaagccctggagagtgt
ctcaccggaaccacatttctttggatggcttcactcacccacccggccta
agctggaaatgagcagttcaaggcgctcctgcccagccccagacccgcct
cttaaaaagcatcaaaattcttatccaaagcaggtttaggggagggggtc
gaggcccgccgcctcccaaggccatgattggtggagacggcggcgccaga
aattctccttgagttgcgtgattggctaagaaagaagctcctcccaactg
cagcactgattggttgctggggacggcgcagtctgattggtgggctgcaa
ccggcgcttgccggacccagaagtgactggttctgaaggcgctcagggcc
gctcagttccctcggtagacctcgatcttgctggccttggccagcatgtc
gatgatgtgggcttcgaagtcggcgtcatgcacgcctgtcttccggaact
cgcccgcgtaccggttgttctcccagtagtggtgccagttgcctcgactg
tcggccccgaacccatacacgttcacctgtgaggagggtggcacaggggt
cactgggagtcgggggcgtggttggggacacccaggcctgacataagggc
actgactcagaggggacttctgtctctttctcatttgtgtttcgcttttt
tcgactgggtcttatgtagcccaagttggcctcaaacgctgctcctgtct
caactctccgtatctgattacaggtgccaccaagaccctgctaaaaatgt
gccttttgaatgaagtagttttgttattaatcttaacacgaattgacgat
gggaaatgagaaaaaattgtttacagcaataaccatatgaaaaacatggg
ttctgcttacgaaacttcttccagcgaacacggctagatcgtgaaacggc
tgatgcctctgattctgttactcctaaattctgctctagacgacaccgac
tgcctacctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113349099_113350222
seq2: B6Ng01-168D17.b_45_1159

seq1  GAATTCTTTACCAAATATTCACTAGAAGATGAGGATGAGGTACAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATTCTTTACCAAATATTCACTAGAAGATGAGGATGAGGTACAAAACAG  50

seq1  GCTATTTGGCTTTCAAGAGATTTCACATCTGTAATCTGAATTAGATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGGCTTTCAAGAGATTTCACATCTGTAATCTGAATTAGATTTCC  100

seq1  TAGTTTTTGTCCTTAATCTTTAAAAAAGGGGCCAAACTGTCTTGTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGTCCTTAATCTTTAAAAAAGGGGCCAAACTGTCTTGTTTGTG  150

seq1  GACACTTCAGAGTCCCAATTCTCTTTCTTGTGAATCCATGCATGCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCAGAGTCCCAATTCTCTTTCTTGTGAATCCATGCATGCTTAAG  200

seq1  ATACATACACTGACAACACTGCCTAAGCACAACAACAGAACCCCACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACTGACAACACTGCCTAAGCACAACAACAGAACCCCACCCCA  250

seq1  AGGACCATAATGGAAGATAACACAGGGCCAGCAGAACAAAACAAGTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATAATGGAAGATAACACAGGGCCAGCAGAACAAAACAAGTAACA  300

seq1  TACAGGATCCATCTCGAAATAGACCAGCTCTCCCCCAGTCAGGGCGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATCCATCTCGAAATAGACCAGCTCTCCCCCAGTCAGGGCGATCA  350

seq1  CCACTTGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTTGCCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTTGCCGGGA  400

seq1  GTCTTCCACTCATTAACTCTTTTATCTGCTCGTATGTGTCGGATGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCACTCATTAACTCTTTTATCTGCTCGTATGTGTCGGATGCCATC  450

seq1  TGGATACACCTAGAAGTCAGTCAAAGAAGAACATCTAACTAGCAATCTGA  500
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGATACACCTAGAAGTCAGTCAAAGAAAAACATCTAACTAGCAATCTGA  500

seq1  TTGTCACCCAGAATGGCCCTCACACTGGCACACTGGGACCACACAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCCAGAATGGCCCTCACACTGGCACACTGGGACCACACAAATGA  550

seq1  GGCACTGCTTGTTTTTGAAATGTTCATGCTTTGCCACCTCAGTTGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCTTGTTTTTGAAATGTTCATGCTTTGCCACCTCAGTTGAGAAA  600

seq1  GGTCCCAAGCCCACATGTTAATGATAAAGATGAGAAAAGCAGTGATAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAAGCCCACATGTTAATGATAAAGATGAGAAAAGCAGTGATAGGG  650

seq1  AATGACCAACAGGGAGGAAATGTTAGGCTTCAAATTTTCCTAACTGCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAACAGGGAGGAAATGTTAGGCTTCAAATTTTCCTAACTGCCGA  700

seq1  GTTATTCAAAGCCTGAAAGGGATGAATTCTCAGTACCCCTTTTTATGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAAAGCCTGAAAGGGATGAATTCTCAGTACCCCTTTTTATGTTG  750

seq1  ATAAGACATTAGACCCTCCCCTCAGGTTTTCTGGAAGGTGAGAATGAAGA  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAAGACATTAGACCCTCCCCTCACGTTTTCTGGAAGGTGAGAATGAAGA  800

seq1  AACATGAATTCAAGCACACCACAAAACAAGAGAAGGATGGGCAAAGGATG  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACATGAATTCAAGCACACCACAAAACAAGAGAATGATGGGCAAAGGATG  850

seq1  GGCAAAGGACGGACGGCCAAGGCACGCTGAGGAGGTGCACGCTCACCTGC  900
       ||||| ||||||| | ||| |||||||||||||||||||||||||||||
seq2  AGCAAAAGACGGAC-GTCAAAGCACGCTGAGGAGGTGCACGCTCACCTGC  899

seq1  ACCAGTGCATCATCTCCTAACAAGGAGCAGGACAAGGTTGGAGTGGTGCC  950
      |||||||||||||||||||||| |||||| |||||||||| |||| ||||
seq2  ACCAGTGCATCATCTCCTAACACGGAGCAAGACAAGGTTGCAGTGTTGCC  949

seq1  CAAGAAGCCAGAGTCAGTCACTTCTTCCACAGTCTCTCCGATAGATAGCA  1000
      ||||||||||||||| ||||| || |||||||||||||||||||||||||
seq2  CAAGAAGCCAGAGTCTGTCACGTCCTCCACAGTCTCTCCGATAGATAGCA  999

seq1  CAAGTGTGGCATTCACGAAAGACACAATGATGTAGGCATCAAACTCATCT  1050
      | ||||||  ||||||||||||||| |||||||| |||||||||||||||
seq2  CGAGTGTGCTATTCACGAAAGACAC-ATGATGTA-GCATCAAACTCATCT  1047

seq1  GGAAAAAAGAAAACAGAGGAGCTGTTAGGAAAAATTCAAATTTACTAG-C  1099
       ||||||||||||| || || ||| |||| ||||||| || ||||||| |
seq2  -GAAAAAAGAAAAC-GAAGA-CTG-TAGG-AAAATTCGAAATTACTAGCC  1092

seq1  ATTAGAAAGGCAGTTGAGACACAAC  1124
      ||||| |||| || |||||| ||||
seq2  ATTAGGAAGG-AG-TGAGACTCAAC  1115

seq1: chr8_113493558_113494577
seq2: B6Ng01-168D17.g_68_1080 (reverse)

seq1  GATGAGGTAGGCAGTCGGTGTTGTCTAGAGCAGAA-TTAGGAGAACCATA  49
      ||||||||||||||||||||| ||||||||||||| ||||||| | || |
seq2  GATGAGGTAGGCAGTCGGTGTCGTCTAGAGCAGAATTTAGGAGTAACAGA  50

seq1  AACAGAGGAAACAGCCCTTTCCCCATCTTAGCTGTGGTTCCCGGGAAGTA  99
      | |||||| | ||||| |||| | ||| |||| || |||| | ||||| |
seq2  ATCAGAGGCATCAGCCGTTTCACGATC-TAGCCGT-GTTCGCTGGAAGAA  98

seq1  GTTTTTGTAAACAGAAACCATGTTTTTTCATATCTGTTATTCCTATAAAC  149
      | ||| |||| ||||| ||||| ||||||||||  |||||| || |||||
seq2  G-TTTCGTAAGCAGAACCCATG-TTTTTCATAT-GGTTATTGCTGTAAAC  145

seq1  AATATTTTTGCATTTCCCATCGTCATTACCTTTTAAGATTTACTAACAAA  199
      ||| ||||  ||||||||||||||| | | | |||||| ||| |||||||
seq2  AATTTTTTCTCATTTCCCATCGTCAATTCGTGTTAAGA-TTAATAACAAA  194

seq1  ACTACTTCATTTAAAAGGCACATTTTTAGCAGGGTCATGGTGGCACCTGT  249
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  ACTACTTCATTCAAAAGGCACATTTTTAGCAGGGTCTTGGTGGCACCTGT  244

seq1  AATCAGATACGGAGAGTTTGAGACAGGAGCAGCGTTTGAGGCCAACCTGG  299
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  AATCAGATACGGAGAG-TTGAGACAGGAGCAGCGTTTGAGGCCAACTTGG  293

seq1  GCTACATAAGACCCAGTCGTGAAAAAGCGAAACACAAATGAGAAAGAGAC  349
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  GCTACATAAGACCCAGTCG-AAAAAAGCGAAACACAAATGAGAAAGAGAC  342

seq1  AGAAGTCCCCTCTGAGTCAGTGCCCTTATGTCAGGCCTGGGTGTCCCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCCCTCTGAGTCAGTGCCCTTATGTCAGGCCTGGGTGTCCCCAA  392

seq1  CCACGCCCCCGACTCCCAGTGACCCCTGTGCCACCCTCCTCACAGGTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCCCGACTCCCAGTGACCCCTGTGCCACCCTCCTCACAGGTGAA  442

seq1  CGTGTATGGGTTCGGGGCCGACAGTCGAGGCAACTGGCACCACTACTGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATGGGTTCGGGGCCGACAGTCGAGGCAACTGGCACCACTACTGGG  492

seq1  AGAACAACCGGTACGCGGGCGAGTTCCGGAAGACAGGCGTGCATGACGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACCGGTACGCGGGCGAGTTCCGGAAGACAGGCGTGCATGACGCC  542

seq1  GACTTCGAAGCCCACATCATCGACATGCTGGCCAAGGCCAGCAAGATCGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCGAAGCCCACATCATCGACATGCTGGCCAAGGCCAGCAAGATCGA  592

seq1  GGTCTACCGAGGGAACTGAGCGGCCCTGAGCGCCTTCAGAACCAGTCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACCGAGGGAACTGAGCGGCCCTGAGCGCCTTCAGAACCAGTCACT  642

seq1  TCTGGGTCCGGCAAGCGCCGGTTGCAGCCCACCAATCAGACTGCGCCGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCGGCAAGCGCCGGTTGCAGCCCACCAATCAGACTGCGCCGTC  692

seq1  CCCAGCAACCAATCAGTGCTGCAGTTGGGAGGAGCTTCTTTCTTAGCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCAATCAGTGCTGCAGTTGGGAGGAGCTTCTTTCTTAGCCAA  742

seq1  TCACGCAACTCAAGGAGAATTTCCGGCGCCGCCGTCTCCACCAATCATGG  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCACGCAACTCAAGGAGAATTTCTGGCGCCGCCGTCTCCACCAATCATGG  792

seq1  CCTTGGGAGGCGGCGGGCCTCGACCCCCTCCCCTAAACCTGCTTTGGATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAGGCGGCGGGCCTCGACCCCCTCCCCTAAACCTGCTTTGGATA  842

seq1  AGAATTTTGATGCTTTTTAAGAGGCGGGTCTGGGGCTGGGCAGGAGCGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTGATGCTTTTTAAGAGGCGGGTCTGGGGCTGGGCAGGAGCGCC  892

seq1  TTGAACTGCTCATTTCCAGCTTAGGCCGGGTGGGTGAGTGAAGCCATCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGCTCATTTCCAGCTTAGGCCGGGTGGGTGAGTGAAGCCATCCA  942

seq1  AAGAAATGTGGTTCCGGTGAGACACTCTCCAGGGCTTTCCGTGGCGCACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGTGGTTCCGGTGAGACACTCTCCAGGGCTTTCCGTGGCGCACC  992

seq1  AGGTAGTAGGGGGTTGAATTC  1020
      |||||||||||||||||||||
seq2  AGGTAGTAGGGGGTTGAATTC  1013