BAC Information

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BAC

Clone NameB6Ng01-168F21
Chromosome8 (Build37)
Map Location 18,736,491 - 18,883,858
singlet/doubletdoublet
Overlap geneMcph1, Angpt2, Agpat5
Upstream geneLOC665638, LOC100040466
Downstream geneLOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168F21.bB6Ng01-168F21.g
ACCDH959624DH959625
length1,1931,153
definitionDH959624|Mus musculus domesticus DNA, BAC clone: B6Ng01-168F21, 5' end.DH959625|Mus musculus domesticus DNA, BAC clone: B6Ng01-168F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,736,491 - 18,737,713)(18,882,703 - 18,883,858)
sequence
gaattcagaccagactagcattgaactcataggcatctgcctgcctctgc
ctccttgaaagctagcattaaaagcctatactttggagtttaactttgcc
tatatctttcctaatatttgtattttttaattgtatattcggtgatagga
ttggttttaactattgttctttaaaatagaaataaagaaaaagtttagga
tagttactgtatgtatacacttatgtatgtatgtagtgattgtatacaca
tgtggaagccagaggcaaatgctggcatctttcttagtctctctccactt
atttatgaatcaaagtctctcgatgagcctggatctcaccaattcagctg
aaagagcttgccagtgaactccagagacctctctctgtgtctacacttcc
cgccaaatactggagtcccagatgcctgatgccatgcccagtgttcacac
gggtcccaggatttttcatgtttgtgtggcagataggtcactaactgggc
catttgtccagccccagtttttcagttattttgtgtgttagaatagaagc
agcgtgggcctcagtgccctagccagctttcagctaaagggactagcagg
tagataaacttccagattgcaacctgtttgttaactctgtagaccccttc
taactaaagtccacagaccttcccgtgtcagcattgagaccaaatgcttg
gtcttctttctcaagaagggagtcatttcttagcctcaagccctgcaggc
ttgctccatggggagatgtataagtagttaatctaacatatcctgcaagc
ctgtttaataggcagggacctcctgactacagcatacaaattacacttcc
atgtatagaaaacaggcatccttatgcaccatgaagagttggcatgcact
gtgcttggcatgctcgcactttggctgctctagtgaaaagctacacacgt
acatacctaactcttcaacacactatcctcctacctagggcccttagtcc
ccctcatgctcaaatgatgatgctaatattaatgccataatcatattaat
catagcagtgcctccccaagatctgggtgttgatcatcttatctaatgca
aataaaatgaaatgcttctatactaatcaaatcatattctcaacaagcaa
ttactcctgggttcagcatagctctgctcaagcacacaatgac
gaattccagccttctgtgagcctccatatgagtgctgggaactgaagccc
ttgaaagagtggcatgtgttcctaactactgagctatcgctctagacctc
agccatatttaaagtctctgaacttgtacttattttgatctggtcaaaat
aagctctaataggattgctgaaaaaacgtatttaacaaagacatgaaatc
gattttagcctcactttgtaagtaaaaaccattacaattcagcacagtaa
catgatacacaagctggattgtttttaggctgttatattctattggcgtg
tgtgtatgaatatacatgttcatgtgtatccatacatgaatatagacact
aacacatagaaaacaagtgacagcacatgactcttcaaagatgtttgaaa
tggctcgttttctggctttgaaaaaacaagaagcaaattttccctcaatt
aaaaaaaattatttattgtgattcaattggtctatttcaactagatcatt
ggtatagtaattttgtgacaaaaatctgtatgaaatttgcagaaatgtta
ccttgaatgactagtaggcaatcacgcttaaatcacaacatagaaacacg
gcaaatcacacgttagaaagcctcttctcacaggacacaccgtgccgtga
ctcacgacagtatgatgtgctcctgaaaggtagctctgttcacaggggac
atgtaccaacagtgtggctccatggaaatcaaagagaaataacacattta
tccaatcctgatggttcttgccataaacaaacgcacaatacttctgtagt
agccaagaaggctcaccctcaggagccagggagctgcccctctgagtcag
ggcagcaccacctgcaccccaacagtgaacagcaccactggaggacacaa
aaccacagagccagggctgaaatagcagtgagcacctacactctagatcg
aacgcagtgccaaagcaaatggagccaggcagaagcacgtgcgaggacag
agaggatgctggcagactttcatcgcttagagctctgtcatgtctattcc
gatatgaagataacgggtcccttgcatttataagaactaaccggcctcag
tgctgggaggtactaacaaaacagcctcagagactggctactagaagctc
tga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18736491_18737713
seq2: B6Ng01-168F21.b_46_1238

seq1  GAATTCAGACCAGACTAGCATTGAACTCATAGGCATCTGCCTGCCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCAGACTAGCATTGAACTCATAGGCATCTGCCTGCCTCTGC  50

seq1  CTCCTTGAAAGCTAGCATTAAAAGCCTATACTTTGGAGTTTAACTTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAAAGCTAGCATTAAAAGCCTATACTTTGGAGTTTAACTTTGCC  100

seq1  TATATCTTTCCTAATATTTGTATTTTTTAATTGTATATTCGGTGATAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTCCTAATATTTGTATTTTTTAATTGTATATTCGGTGATAGGA  150

seq1  TTGGTTTTAACTATTGTTCTTTAAAATAGAAATAAAGAAAAAGTTTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAACTATTGTTCTTTAAAATAGAAATAAAGAAAAAGTTTAGGA  200

seq1  TAGTTACTGTATGTATACACTTATGTATGTATGTAGTGATTGTATACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTGTATGTATACACTTATGTATGTATGTAGTGATTGTATACACA  250

seq1  TGTGGAAGCCAGAGGCAAATGCTGGCATCTTTCTTAGTCTCTCTCCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGCCAGAGGCAAATGCTGGCATCTTTCTTAGTCTCTCTCCACTT  300

seq1  ATTTATGAATCAAAGTCTCTCGATGAGCCTGGATCTCACCAATTCAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAATCAAAGTCTCTCGATGAGCCTGGATCTCACCAATTCAGCTG  350

seq1  AAAGAGCTTGCCAGTGAACTCCAGAGACCTCTCTCTGTGTCTACACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTTGCCAGTGAACTCCAGAGACCTCTCTCTGTGTCTACACTTCC  400

seq1  CGCCAAATACTGGAGTCCCAGATGCCTGATGCCATGCCCAGTGTTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAATACTGGAGTCCCAGATGCCTGATGCCATGCCCAGTGTTCACAC  450

seq1  GGGTCCCAGGATTTTTCATGTTTGTGTGGCAGATAGGTCACTAACTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCAGGATTTTTCATGTTTGTGTGGCAGATAGGTCACTAACTGGGC  500

seq1  CATTTGTCCAGCCCCAGTTTTTCAGTTATTTTGTGTGTTAGAATAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCCAGCCCCAGTTTTTCAGTTATTTTGTGTGTTAGAATAGAAGC  550

seq1  AGCGTGGGCCTCAGTGCCCTAGCCAGCTTTCAGCTAAAGGGACTAGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGGCCTCAGTGCCCTAGCCAGCTTTCAGCTAAAGGGACTAGCAGG  600

seq1  TAGATAAACTTCCAGATTGCAACCTGTTTGTTAACTCTGTAGACCCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAACTTCCAGATTGCAACCTGTTTGTTAACTCTGTAGACCCCTTC  650

seq1  TAACTAAAGTCCACAGACCTTCCCGTGTCAGCATTGAGACCAAATGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAGTCCACAGACCTTCCCGTGTCAGCATTGAGACCAAATGCTTG  700

seq1  GTCTTCTTTCTCAAGAAGGGAGTCATTTCTTAGCCTCAAGCCCTGCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTCTCAAGAAGGGAGTCATTTCTTAGCCTCAAGCCCTGCAGGC  750

seq1  TTGCTCCATGGGGAGATGTATAAGTAGTTAATCTAACATATCCTGCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCATGGGGAGATGTATAAGTAGTTAATCTAACATATCCTGCAAGC  800

seq1  CTGTTTAATAGGCAGGGACCTCCTGACTACAGCATACAAATTACACTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAATAGGCAGGGACCTCCTGACTACAGCATACAAATTACACTTCC  850

seq1  ATGTATAGAAAACAGGCATCCTTATGCACCATGAAGAGTTGGCATGCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGAAAACAGGCATCCTTATGCACCATGAAGAGTTGGCATGCACT  900

seq1  GTGCTTGGCATGCTCGCACTTTGGCTGCTCTAGTGAAAAGCTACACACGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGCTTGGCATGCTCGCACTTTGGCTGCTCTAGTGAAAAGCTACACAC-G  949

seq1  TACCATACCTAACTCTTCAAACACACTATCCTCCCTACCCTAGGGCCCCT  1000
      || ||||||||||||||| ||||||||||||| |||| |||||||||| |
seq2  TA-CATACCTAACTCTTC-AACACACTATCCT-CCTA-CCTAGGGCCCTT  995

seq1  AGTCCCCCTCATGCCTCAAAATGATGATGCTAATATTTAATGGCCATAAT  1050
      ||||||||||||| ||| ||||||||||||||||| ||||| ||||||||
seq2  AGTCCCCCTCATG-CTC-AAATGATGATGCTAATA-TTAAT-GCCATAAT  1041

seq1  CATATTTAATCATAGCAGTTGCCTCCCCAAGATCTTGGGTGTTTAATCAT  1100
      |||| ||||||||||||| ||||||||||||||| |||||| || |||||
seq2  CATA-TTAATCATAGCAG-TGCCTCCCCAAGATC-TGGGTG-TTGATCAT  1087

seq1  CTTATCTAAATGCAAATAAAATAAAAATGCTTCTAATACTAATCACATAC  1150
      ||||||| ||||||||||||||  |||||||||| |||||||||| || |
seq2  CTTATCT-AATGCAAATAAAAT-GAAATGCTTCT-ATACTAATCAAAT-C  1133

seq1  ATATTCCTCAACACAGCATTTAACTTCTGGGGGTTCAGCTT--CTGTCCT  1198
      ||||| ||||||| |||| || ||| ||  ||||||||| |  || | ||
seq2  ATATT-CTCAACA-AGCAATT-ACTCCT--GGGTTCAGCATAGCTCTGCT  1178

seq1  CCAAGCTGCAAGGCAACACAATGAC  1223
       |||||         ||||||||||
seq2  -CAAGC---------ACACAATGAC  1193

seq1: chr8_18882703_18883858
seq2: B6Ng01-168F21.g_67_1219 (reverse)

seq1  TCAGAGCTTCTAGTAGCCCAGCTACTGA-GCTGCTTTGTTAGTACCT-CC  48
      |||||||||||||||| ||||   |||| |||| ||||||||||||| ||
seq2  TCAGAGCTTCTAGTAG-CCAGTCTCTGAGGCTGTTTTGTTAGTACCTCCC  49

seq1  AGCACCTGA-GCCGTTAAGTACTTATAAATGCAAGGGACCCGTTATCTTC  97
      |||| |||| |||| | ||| |||||||||||||||||||||||||||||
seq2  AGCA-CTGAGGCCGGTTAGTTCTTATAAATGCAAGGGACCCGTTATCTTC  98

seq1  ATATCGGAATAGACATGAACAGAGCTCTAAGGCGATGAAAGTCTGCCAGC  147
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  ATATCGGAATAGACATG-ACAGAGCTCTAA-GCGATGAAAGTCTGCCAGC  146

seq1  ATCCTCTCTGTCCTCGCACGTGCCTTCTGCCTGGCTCCATTTGCTTTGGC  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCCTCTCTGTCCTCGCACGTG-CTTCTGCCTGGCTCCATTTGCTTTGGC  195

seq1  ACTGCGTTCGATCTAGAGTGTAGGTGCTCACTGCTTATTTCAGCCCTGGC  247
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGCGTTCGATCTAGAGTGTAGGTGCTCACTGC-TATTTCAGCCCTGGC  244

seq1  TCTGTGGTTTTGTGTCCTCCAGTGGTGCTGTTCACTGTTGGGGTGCAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTTTTGTGTCCTCCAGTGGTGCTGTTCACTGTTGGGGTGCAGGT  294

seq1  GGTGCTGCCCTGACTCAGAGGGGCAGCTCCCTGGCTCCTGAGGGTGAGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGCCCTGACTCAGAGGGGCAGCTCCCTGGCTCCTGAGGGTGAGCC  344

seq1  TTCTTGGCTACTACAGAAGTATTGTGCGTTTGTTTATGGCAAGAACCATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTACTACAGAAGTATTGTGCGTTTGTTTATGGCAAGAACCATC  394

seq1  AGGATTGGATAAATGTGTTATTTCTCTTTGATTTCCATGGAGCCACACTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGGATAAATGTGTTATTTCTCTTTGATTTCCATGGAGCCACACTG  444

seq1  TTGGTACATGTCCCCTGTGAACAGAGCTACCTTTCAGGAGCACATCATAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACATGTCCCCTGTGAACAGAGCTACCTTTCAGGAGCACATCATAC  494

seq1  TGTCGTGAGTCACGGCACGGTGTGTCCTGTGAGAAGAGGCTTTCTAACGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGAGTCACGGCACGGTGTGTCCTGTGAGAAGAGGCTTTCTAACGT  544

seq1  GTGATTTGCCGTGTTTCTATGTTGTGATTTAAGCGTGATTGCCTACTAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGCCGTGTTTCTATGTTGTGATTTAAGCGTGATTGCCTACTAGT  594

seq1  CATTCAAGGTAACATTTCTGCAAATTTCATACAGATTTTTGTCACAAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGGTAACATTTCTGCAAATTTCATACAGATTTTTGTCACAAAAT  644

seq1  TACTATACCAATGATCTAGTTGAAATAGACCAATTGAATCACAATAAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATACCAATGATCTAGTTGAAATAGACCAATTGAATCACAATAAATA  694

seq1  ATTTTTTTTAATTGAGGGAAAATTTGCTTCTTGTTTTTTCAAAGCCAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAATTGAGGGAAAATTTGCTTCTTGTTTTTTCAAAGCCAGAA  744

seq1  AACGAGCCATTTCAAACATCTTTGAAGAGTCATGTGCTGTCACTTGTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGCCATTTCAAACATCTTTGAAGAGTCATGTGCTGTCACTTGTTTT  794

seq1  CTATGTGTTAGTGTCTATATTCATGTATGGATACACATGAACATGTATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTTAGTGTCTATATTCATGTATGGATACACATGAACATGTATAT  844

seq1  TCATACACACACGCCAATAGAATATAACAGCCTAAAAACAATCCAGCTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACACACGCCAATAGAATATAACAGCCTAAAAACAATCCAGCTTG  894

seq1  TGTATCATGTTACTGTGCTGAATTGTAATGGTTTTTACTTACAAAGTGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATGTTACTGTGCTGAATTGTAATGGTTTTTACTTACAAAGTGAG  944

seq1  GCTAAAATCGATTTCATGTCTTTGTTAAATACGTTTTTTCAGCAATCCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATCGATTTCATGTCTTTGTTAAATACGTTTTTTCAGCAATCCTA  994

seq1  TTAGAGCTTATTTTGACCAGATCAAAATAAGTACAAGTTCAGAGACTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTTATTTTGACCAGATCAAAATAAGTACAAGTTCAGAGACTTTA  1044

seq1  AATATGGCTGAGGTCTAGAGCGATAGCTCAGTAGTTAGGAACACATGCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTGAGGTCTAGAGCGATAGCTCAGTAGTTAGGAACACATGCCA  1094

seq1  CTCTTTCAAGGGCTTCAGTTCCCAGCACTCATATGGAGGCTCACAGAAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAAGGGCTTCAGTTCCCAGCACTCATATGGAGGCTCACAGAAGG  1144

seq1  CTGGAATTC  1156
      |||||||||
seq2  CTGGAATTC  1153