BAC Information

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BAC

Clone NameB6Ng01-169C12
Chromosome8 (Build37)
Map Location 91,346,527 - 91,418,235
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
Downstream geneSall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C12.bB6Ng01-169C12.g
ACCDH960207DH960208
length1,1251,167
definitionDH960207|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C12, 5' end.DH960208|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,346,527 - 91,347,660)(91,417,024 - 91,418,235)
sequence
gaattcacttatgaaagcagctgtgttgtgaatgaaagggtcagtcacca
cggaagaagagttctaattgtcctctctacagtccttggagcatctgggg
gatatgctgcactacacaggatccttgtggaagccctgtgttggtcatag
ttgggaggaacaagaggagagcctaggctagaacattgcttagggtctcc
agggaaaatcaagacatggagggagagggtcataaatatatgaagctggt
gattttctagtttggatcactttaggtcaagggctagatcatttgggcca
tttgggtcaaggtctcacctagtatttggtagaatgggagagtttgatga
aaaacatattcaggatccactagcttgcaggtggacaaattctctctgga
ctctagaggttggctggtcctgaaagagtacgtctgtgtgtcaccagaca
gcacggacatacagcccccagatcacttagaaatatgttggggacatagc
tcagtagtagaacattgacctaggaggcaggaagccctgagttttatccc
cagcaccacaaacaaaacaccaaaacaaaacccataaccttaaaaaaacc
tgccaccacaacaagaaacaacaaaacaacaacaaccataagtgtttctg
ctcagagggaagggcgtccttggacttggaagcccttcaggaaccattca
gctctgagggaaaaggtatccctgtgtaagggcatcttgagatatgacgt
ggggtgggggggaaccacacagctctgaggtggaacattgtccaatggaa
gggtatcaggagacatgggaactcaggaacaacacagtcctgagaggaag
cctcctcagcagaggtgtcacagctcccaggggaggggatcagcagctga
gctgggcctcattcccactcttttgcttcccccttcattgtttctttccc
cttggcttctttggacagtgagtcacaccaggcagaaaatatcatgaaag
aagatttatggagggttcagtatggagggatagctgcctctgctcctggc
agtgggcagcaggagtggaacaaaggacagaacttataaggattggtaag
ggttggactttcgggcagctatttc
gaattctttcaaagagatcaaggtagggtctcttgcaggaagctatatct
aagccaagatctcggtagcagtcataagaaagaaactggcagaaaatggg
ggtaggagaggacagaaaccataaagatcaagtgggatggaaagagaaga
gggcaggtctttagctagtcatggagggaccacgaagggatcctactgac
cataaagccctggtgtcacaggttatcctgattttgttggaaaagcctgg
ttctagctacagtgagatgactcatctttataatcaacttgacagaactg
ggcaccaagaaaacaaatctctgctcatgtctctgaaagattttctggat
tcataagctatgaagacccatcccaaatatgatgtggggtcccagactga
agaaaaaggagaaaggaacttgttccatttgctaacaaaaaccacggacc
ccagatcacagatctggagcctcagaagcacttgctacagcttggattct
cccagctgctgctactctgtcacccaaagcagaaagctgtcctggaagtc
aaatgaccttgatcccaatggctttgttcagagactctcaggcctgtgca
tgtaccaggaataagctggaagaatactgaagctcctctgagctctcttg
gtggtacaagggctctgagctttcttggtggcacagggctcactgctcag
aagctctatgggacattccttagtggccctcaccactgcccaagctctgg
tctctggccatgcactgctttaagggttatctcagaccctcactgaactg
cttcccccaggctgtgactctaacaggtgatgcagagctcttatctttcc
tctcatgcccacctccaccccactctctctgtttctttcttctttctctc
tctcttttttaaactttgctttctgggtgggtttctctgcttgctttctc
acagactaattattatacatgaaaaatagcttcttgcactagagagacat
tctctactcagtaactgggagtttcatgtagtcacagagcatatacactg
cggatttacactacattctctgtctgtcttgaacaacgagtctatatagt
cagcatatcaatgcttaatagctaaaggattcctgaccaagcagcgtacg
actgatccagttcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_91346527_91347660
seq2: B6Ng01-169C12.b_48_1172

seq1  GAATTCACTTATGAAAGCAGCTGTGTTGTGAATGAAAGGGTCAGTCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATGAAAGCAGCTGTGTTGTGAATGAAAGGGTCAGTCACCA  50

seq1  CGGAAGAAGAGTTCTAATTGTCCTCTCTACAGTCCTTGGAGCATCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAAGAGTTCTAATTGTCCTCTCTACAGTCCTTGGAGCATCTGGGG  100

seq1  GATATGCTGCACTACACAGGATCCTTGTGGAAGCCCTGTGTTGGTCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTGCACTACACAGGATCCTTGTGGAAGCCCTGTGTTGGTCATAG  150

seq1  TTGGGAGGAACAAGAGGAGAGCCTAGGCTAGAACATTGCTTAGGGTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGAACAAGAGGAGAGCCTAGGCTAGAACATTGCTTAGGGTCTCC  200

seq1  AGGGAAAATCAAGACATGGAGGGAGAGGGTCATAAATATATGAAGCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAATCAAGACATGGAGGGAGAGGGTCATAAATATATGAAGCTGGT  250

seq1  GATTTTCTAGTTTGGATCACTTTAGGTCAAGGGCTAGATCATTTGGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTAGTTTGGATCACTTTAGGTCAAGGGCTAGATCATTTGGGCCA  300

seq1  TTTGGGTCAAGGTCTCACCTAGTATTTGGTAGAATGGGAGAGTTTGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCAAGGTCTCACCTAGTATTTGGTAGAATGGGAGAGTTTGATGA  350

seq1  AAAACATATTCAGGATCCACTAGCTTGCAGGTGGACAAATTCTCTCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATTCAGGATCCACTAGCTTGCAGGTGGACAAATTCTCTCTGGA  400

seq1  CTCTAGAGGTTGGCTGGTCCTGAAAGAGTACGTCTGTGTGTCACCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGTTGGCTGGTCCTGAAAGAGTACGTCTGTGTGTCACCAGACA  450

seq1  GCACGGACATACAGCCCCCAGATCACTTAGAAATATGTTGGGGACATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGACATACAGCCCCCAGATCACTTAGAAATATGTTGGGGACATAGC  500

seq1  TCAGTAGTAGAACATTGACCTAGGAGGCAGGAAGCCCTGAGTTTTATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTAGAACATTGACCTAGGAGGCAGGAAGCCCTGAGTTTTATCCC  550

seq1  CAGCACCACAAACAAAACACCAAAACAAAACCCATAACCTTAAAAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCACAAACAAAACACCAAAACAAAACCCATAACCTTAAAAAAACC  600

seq1  TGCCACCACAACAAGAAACAACAAAACAACAACAACCATAAGTGTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACAACAAGAAACAACAAAACAACAACAACCATAAGTGTTTCTG  650

seq1  CTCAGAGGGAAGGGCGTCCTTGGACTTGGAAGCCCTTCAGGAACCATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGGAAGGGCGTCCTTGGACTTGGAAGCCCTTCAGGAACCATTCA  700

seq1  GCTCTGAGGGAAAAGGTATCCCTGTGTAAGGGCATCTTGAGATATGACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGGGAAAAGGTATCCCTGTGTAAGGGCATCTTGAGATATGACGT  750

seq1  GGGGTGGGGGGGAACCACACAGCTCTGAGGTGGAACATTGTCCAATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGGGGAACCACACAGCTCTGAGGTGGAACATTGTCCAATGGAA  800

seq1  GGGTATCAGGAGACATGGGAACTCAGGAACAACACAGTCCTGAGAGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCAGGAGACATGGGAACTCAGGAACAACACAGTCCTGAGAGGAAG  850

seq1  CCTCCTCAGCAGAGGTGTCACAGCTCCCAGGGGAGGGGATCAGCAGCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGCAGAGGTGTCACAGCTCCCAGGGGAGGGGATCAGCAGCTGA  900

seq1  GCTGGGCCTCATTCCCACTCTTTTGCTTCCCCCTTCATTGTTTCTTTTCC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTGGGCCTCATTCCCACTCTTTTGCTTCCCCCTTCATTGTTTC-TTTCC  949

seq1  CCTTGGCTTCTTTGGACAAGTGAGTCACACCAGGCAGAAAATATCATGAA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTTGGCTTCTTTGGAC-AGTGAGTCACACCAGGCAGAAAATATCATGAA  998

seq1  AG-AGATTTATTGGAGGGTCCAGTATGGAGGGATAGCTGCCCTCTGCTCC  1049
      || ||||||| |||||||| ||||||||||||||||||| ||||||||||
seq2  AGAAGATTTA-TGGAGGGTTCAGTATGGAGGGATAGCTG-CCTCTGCTCC  1046

seq1  TGGCAGTGGGCAGCAGGGAGTTGGACAAAGGACAGGACTTATAGGGGATT  1099
      ||||||||||||||| ||||| | ||||||||||| ||||||| ||   |
seq2  TGGCAGTGGGCAGCA-GGAGTGGAACAAAGGACAGAACTTATAAGG--AT  1093

seq1  TGTTAGGGGTTGGAGCTTTTCAGGGCAGCGATTTC  1134
      || || |||||||| ||||   ||||||| |||||
seq2  TGGTAAGGGTTGGA-CTTT--CGGGCAGCTATTTC  1125

seq1: chr8_91417024_91418235
seq2: B6Ng01-169C12.g_68_1234 (reverse)

seq1  CCCTGAACTGGATCTTAGCTCCGGTAACAGCCCATGCCTGTGGCTCAGAG  50
      ||||||||||||||  || ||  |||     |  |||   | | ||||  
seq2  CCCTGAACTGGATC--AG-TC--GTA-----CGCTGC---TTGGTCAGGA  37

seq1  ATCCTTTCTAAGCCTATTTTAGGCATTTGATTATTGCCTGACTAATAATA  100
      |||||||   |||   | ||| ||| |||| |||   ||||||    |||
seq2  ATCCTTT---AGC---TATTAAGCA-TTGA-TAT--GCTGACT----ATA  73

seq1  GGGACTCGTTTTGTCAAAGAACAGACAGGAGGATGTAGTGTAAAT-CGCA  149
        |||||||| | ||||   ||||||| ||| ||||||||||||| ||||
seq2  TAGACTCGTTGT-TCAA--GACAGACA-GAGAATGTAGTGTAAATCCGCA  119

seq1  GTGTATAATTGCTCTGTGACTACCATTGAAAACTCCCAGTTACTGGAGTA  199
      |||||||  ||||||||||||| |||   ||||||||||||||| |||| 
seq2  GTGTATA--TGCTCTGTGACTA-CAT--GAAACTCCCAGTTACT-GAGT-  162

seq1  AGAGAATGTCTCTCTTAGGTGCAAGAAGCTATTTTTTCATGTAATAATAA  249
      |||||||||||||||   ||||||||||||| |||||||||| |||||||
seq2  AGAGAATGTCTCTCT--AGTGCAAGAAGCTA-TTTTTCATGT-ATAATAA  208

seq1  TTAGTCTGTGAGAAAGCAAGCAGAGAAACCCACCCAGAAAGCAAAGTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAGTCTGTGAGAAAGCAAGCAGAGAAACCCACCCAGAAAGCAAAGTTT-  257

seq1  AAAAAAAGAGAGAGAGAAAAGAAGAAAAGAAACAGAGAGAGTGGGGTGGA  349
       ||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  -AAAAAAGAGAGAGAG-AAAGAAG-AAAGAAACAGAGAGAGTGGGGTGGA  304

seq1  GGTGGGCATGAGAGGAAAGATAAGAGCTCTGCATCACCTGTTAGAGTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCATGAGAGGAAAGATAAGAGCTCTGCATCACCTGTTAGAGTCAC  354

seq1  AGCCTGGGGGAAGCAGTTCAGTGAGGGTCTGAGATAACCCTTAAAGCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGGAAGCAGTTCAGTGAGGGTCTGAGATAACCCTTAAAGCAGT  404

seq1  GCATGGCCAGAGACCAGAGCTTGGGCAGTGGTGAGGGCCACTAAGGAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCAGAGACCAGAGCTTGGGCAGTGGTGAGGGCCACTAAGGAATG  454

seq1  TCCCATAGAGCTTCTGAGCAGTGAGCCCTGTGCCACCAAGAAAGCTCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGAGCTTCTGAGCAGTGAGCCCTGTGCCACCAAGAAAGCTCAGA  504

seq1  GCCCTTGTACCACCAAGAGAGCTCAGAGGAGCTTCAGTATTCTTCCAGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTACCACCAAGAGAGCTCAGAGGAGCTTCAGTATTCTTCCAGCT  554

seq1  TATTCCTGGTACATGCACAGGCCTGAGAGTCTCTGAACAAAGCCATTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGGTACATGCACAGGCCTGAGAGTCTCTGAACAAAGCCATTGGG  604

seq1  ATCAAGGTCATTTGACTTCCAGGACAGCTTTCTGCTTTGGGTGACAGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTCATTTGACTTCCAGGACAGCTTTCTGCTTTGGGTGACAGAGT  654

seq1  AGCAGCAGCTGGGAGAATCCAAGCTGTAGCAAGTGCTTCTGAGGCTCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCTGGGAGAATCCAAGCTGTAGCAAGTGCTTCTGAGGCTCCAG  704

seq1  ATCTGTGATCTGGGGTCCGTGGTTTTTGTTAGCAAATGGAACAAGTTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGATCTGGGGTCCGTGGTTTTTGTTAGCAAATGGAACAAGTTCCT  754

seq1  TTCTCCTTTTTCTTCAGTCTGGGACCCCACATCATATTTGGGATGGGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTTTCTTCAGTCTGGGACCCCACATCATATTTGGGATGGGTCT  804

seq1  TCATAGCTTATGAATCCAGAAAATCTTTCAGAGACATGAGCAGAGATTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTTATGAATCCAGAAAATCTTTCAGAGACATGAGCAGAGATTTG  854

seq1  TTTTCTTGGTGCCCAGTTCTGTCAAGTTGATTATAAAGATGAGTCATCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGGTGCCCAGTTCTGTCAAGTTGATTATAAAGATGAGTCATCTC  904

seq1  ACTGTAGCTAGAACCAGGCTTTTCCAACAAAATCAGGATAACCTGTGACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTAGAACCAGGCTTTTCCAACAAAATCAGGATAACCTGTGACA  954

seq1  CCAGGGCTTTATGGTCAGTAGGATCCCTTCGTGGTCCCTCCATGACTAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTTTATGGTCAGTAGGATCCCTTCGTGGTCCCTCCATGACTAGC  1004

seq1  TAAAGACCTGCCCTCTTCTCTTTCCATCCCACTTGATCTTTATGGTTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCTGCCCTCTTCTCTTTCCATCCCACTTGATCTTTATGGTTTCT  1054

seq1  GTCCTCTCCTACCCCCATTTTCTGCCAGTTTCTTTCTTATGACTGCTACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCCTACCCCCATTTTCTGCCAGTTTCTTTCTTATGACTGCTACC  1104

seq1  GAGATCTTGGCTTAGATATAGCTTCCTGCAAGAGACCCTACCTTGATCTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTGGCTTAGATATAGCTTCCTGCAAGAGACCCTACCTTGATCTC  1154

seq1  TTTGAAAGAATTC  1212
      |||||||||||||
seq2  TTTGAAAGAATTC  1167