BAC Information

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BAC

Clone NameB6Ng01-169H13
Chromosome8 (Build37)
Map Location 105,747,814 - 105,961,670
singlet/doubletdoublet
Overlap gene1600027J07Rik
Upstream geneCdh11, EG667618, LOC100041368
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169H13.bB6Ng01-169H13.g
ACCDH960443DH960444
length890857
definitionDH960443|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H13, 5' end.DH960444|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,747,814 - 105,748,703)(105,960,805 - 105,961,670)
sequence
gaattcaatttaaattatttaaaaataatcttgtttcaggtattttgtta
caactgaatgaaacaacagcaaagaacaatagtcaatccaagactcaagc
cgatctcggtgatttgtaatgtaaacctggacactgaaacagttacacat
aaattatgtacatacacactagagtatcccaagacccattgtactcaata
tggcttaccgagtataagcctgccatcatttgcttgacagttgtctagta
agaaaagtaaccatttataaaattaaaataatcctaggttttctctgcct
ctgacaaggcacattacattacctagcagcatgttttgtgtttcataggg
gctcagtgcatatcatatattcatacatttgtaatgtatgatgtcatgac
acctaatcaaattaattttcaatgatggtgatctctctctctctctctct
ctctctctctctctctctctctgtatgtgtgtgtgtgtgtgtgtgtgtgt
gtaaaagagagaaaaacagacagacagacagggggacaggttgagaagga
gaaataaaagaaaagaaaatgagaaacagaaggaatgaaggtagggtgag
aggaagaaagaaggaagtaaaaaaaaagaatctttcatattttagtctct
gagacacttttacttaaattatttggggttaaagtccaatttactagcaa
aacgtaatgccagttgtaaatcttggcacaaatcttccataacctcagca
gtgtgtttttcaaaggtacctttgttcattgtctccccttctaatgaatt
aagtctaaaagtaagtttttttttaaccatgagttgatttaattggatat
aaggcaggcagcatgggacacaaggtaagcattaaaatga
gaattctttttttttttttttaaggactgaatgcacataaaaggcagctg
gggttgtgatgacttttatttttttcctttctttttcttttttattcccc
caaacacaaacactttttttttgggggggggaggttatacttctcatcag
caccaacctcacaaacctgagcatggatattttcagtctcccgttacaga
tgaaaacttgaggttatattaagggcatttagtgctttcttctcccacac
agcaaattacccaaagattcattattccaatgtatgtcggtgtggcaaca
gacccatgttctttcttttcattaagttaaagtgggttggagcactcata
gtcaggctcagaccagtttgtgaaactggcataggatcaccaatggtgat
gaatggcagttttctgggtggcattgtaacttgtataaggtatctagaat
ttctacttactcagtctaaattttgaccccaagtttcctacataataggc
atgatggggcacatatctcatgagcagtttaaggctttttgcaaacctgg
aatgaaccagggcttaaggggctatatgaagctgcccctcctggaaatat
atcttctggtaccttggttaaaatttgctagaatccagatcttattagga
atctgctcacaattatgcactgtcccaattttatcttcagaattgaatta
attagccccaaaacatttgcatatgtaatttgtttttttcttcagatgca
ctgtgatacaagctattcttttacatcattagatggaaacatattatatt
ttcatgcaaagcagatctgtatttgaagtgtctattccccttgtcttaaa
tatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105747814_105748703
seq2: B6Ng01-169H13.b_42_931

seq1  GAATTCAATTTAAATTATTTAAAAATAATCTTGTTTCAGGTATTTTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAATTATTTAAAAATAATCTTGTTTCAGGTATTTTGTTA  50

seq1  CAACTGAATGAAACAACAGCAAAGAACAATAGTCAATCCAAGACTCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAATGAAACAACAGCAAAGAACAATAGTCAATCCAAGACTCAAGC  100

seq1  CGATCTCGGTGATTTGTAATGTAAACCTGGACACTGAAACAGTTACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCGGTGATTTGTAATGTAAACCTGGACACTGAAACAGTTACACAT  150

seq1  AAATTATGTACATACACACTAGAGTATCCCAAGACCCATTGTACTCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTACATACACACTAGAGTATCCCAAGACCCATTGTACTCAATA  200

seq1  TGGCTTACCGAGTATAAGCCTGCCATCATTTGCTTGACAGTTGTCTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACCGAGTATAAGCCTGCCATCATTTGCTTGACAGTTGTCTAGTA  250

seq1  AGAAAAGTAACCATTTATAAAATTAAAATAATCCTAGGTTTTCTCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTAACCATTTATAAAATTAAAATAATCCTAGGTTTTCTCTGCCT  300

seq1  CTGACAAGGCACATTACATTACCTAGCAGCATGTTTTGTGTTTCATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAGGCACATTACATTACCTAGCAGCATGTTTTGTGTTTCATAGGG  350

seq1  GCTCAGTGCATATCATATATTCATACATTTGTAATGTATGATGTCATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGCATATCATATATTCATACATTTGTAATGTATGATGTCATGAC  400

seq1  ACCTAATCAAATTAATTTTCAATGATGGTGATCTCTCTCTCTCTCTCTCT  450
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  ACCTAATCAAATTAATTTTCAATGATGGTGA--TCTCTCTCTCTCTCTCT  448

seq1  CTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTGTGTGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTGTGTGTGTGTGTGTGTGT  498

seq1  GTGTAAAAGAGAGAAAAACAGACAGACAGACAGGGGGACAGGTTGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAAGAGAGAAAAACAGACAGACAGACAGGGGGACAGGTTGAGAAG  548

seq1  GAGAAATAAAAGAAAAGAAAATGAGAAACAGAAGGAATGAAGGTAGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAAAAGAAAAGAAAATGAGAAACAGAAGGAATGAAGGTAGGGTG  598

seq1  AGAGGAAGAAAGAAGGAAGTAAAAAAAAAGAATCTTTCATATTTTAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAAAGAAGGAAGTAAAAAAAAAGAATCTTTCATATTTTAGTCT  648

seq1  CTGAGACACTTTTACTTAAATTA-TTGGGGTTAAAGTCCAATTTACTAGC  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAGACACTTTTACTTAAATTATTTGGGGTTAAAGTCCAATTTACTAGC  698

seq1  AAAACGTAATGCCAGTTGTAAATCTTGGCACAAATCTTCCATAACCTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTAATGCCAGTTGTAAATCTTGGCACAAATCTTCCATAACCTCAG  748

seq1  CAGTGTG-TTTTCAAAGGTACCTTTGTTCATTGTCT-CCCTTCTAATGAA  797
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  CAGTGTGTTTTTCAAAGGTACCTTTGTTCATTGTCTCCCCTTCTAATGAA  798

seq1  TTAAGTCTTAAGAGTAAG-TTTTTTTTAACCATGAGTTGATTTGAATTGG  846
      ||||||| ||| |||||| |||||||||||||||||||||||| ||||||
seq2  TTAAGTC-TAAAAGTAAGTTTTTTTTTAACCATGAGTTGATTT-AATTGG  846

seq1  ATATAAGGCAGGCAGCATGGGACACAAGGTAAGCATTAAAATGA  890
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGCAGGCAGCATGGGACACAAGGTAAGCATTAAAATGA  890

seq1: chr8_105960805_105961670
seq2: B6Ng01-169H13.g_67_923 (reverse)

seq1  TTTGAATATTTTAAAGACAAGGGGAATAGACACTTCAAAAATAACAGATT  50
      |||| ||||||  ||||||||||||||||||||||||||    ||||| |
seq2  TTTG-ATATTT--AAGACAAGGGGAATAGACACTTCAAA---TACAGA-T  43

seq1  CTGCTTTGCATGAAAATATAATATGTTTCCATCTTAATGATGTAAAAGAA  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGCTTTGCATGAAAATATAATATGTTTCCATC-TAATGATGTAAAAGAA  92

seq1  TAGCTTGTTATCACAGTGCATCTGAAGAAAAAAACAAATTACATATGCAA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTG-TATCACAGTGCATCTGAAGAAAAAAACAAATTACATATGCAA  141

seq1  ATGTTTTGGGGCTAATTAATTCAATTCTGAAGATAAAATTGGGACAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGGGGCTAATTAATTCAATTCTGAAGATAAAATTGGGACAGTGC  191

seq1  ATAATTGTGAGCAGATTCCTAATAAGATCTGGATTCTAGCAAATTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTGAGCAGATTCCTAATAAGATCTGGATTCTAGCAAATTTTAAC  241

seq1  CAAGGTACCAGAAGATATATTTCCAGGAGGGGCAGCTTCATATAGCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTACCAGAAGATATATTTCCAGGAGGGGCAGCTTCATATAGCCCCT  291

seq1  TAAGCCCTGGTTCATTCCAGGTTTGCAAAAAGCCTTAAACTGCTCATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCTGGTTCATTCCAGGTTTGCAAAAAGCCTTAAACTGCTCATGAG  341

seq1  ATATGTGCCCCATCATGCCTATTATGTAGGAAACTTGGGGTCAAAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCCCCATCATGCCTATTATGTAGGAAACTTGGGGTCAAAATTTA  391

seq1  GACTGAGTAAGTAGAAATTCTAGATACCTTATACAAGTTACAATGCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTAAGTAGAAATTCTAGATACCTTATACAAGTTACAATGCCACC  441

seq1  CAGAAAACTGCCATTCATCACCATTGGTGATCCTATGCCAGTTTCACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACTGCCATTCATCACCATTGGTGATCCTATGCCAGTTTCACAAA  491

seq1  CTGGTCTGAGCCTGACTATGAGTGCTCCAACCCACTTTAACTTAATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGAGCCTGACTATGAGTGCTCCAACCCACTTTAACTTAATGAAA  541

seq1  AGAAAGAACATGGGTCTGTTGCCACACCGACATACATTGGAATAATGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACATGGGTCTGTTGCCACACCGACATACATTGGAATAATGAAT  591

seq1  CTTTGGGTAATTTGCTGTGTGGGAGAAGAAAGCACTAAATGCCCTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTAATTTGCTGTGTGGGAGAAGAAAGCACTAAATGCCCTTAATA  641

seq1  TAACCTCAAGTTTTCATCTGTAACGGGAGACTGAAAATATCCATGCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAAGTTTTCATCTGTAACGGGAGACTGAAAATATCCATGCTCAG  691

seq1  GTTTGTGAGGTTGGTGCTGATGAGAAGTATAACCTCCCCCCCCCAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAGGTTGGTGCTGATGAGAAGTATAACCTCCCCCCCCCAAAAAA  741

seq1  AAAGTGTTTGTGTTTGGGGGAATAAAAAAGAAAAAGAAAGGAAAAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTGTGTTTGGGGGAATAAAAAAGAAAAAGAAAGGAAAAAAATA  791

seq1  AAAGTCATCACAACCCCAGCTGCCTTTTATGTGCATTCAGTCCTTAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATCACAACCCCAGCTGCCTTTTATGTGCATTCAGTCCTTAAAAA  841

seq1  AAAAAAAAAAGAATTC  866
      ||||||||||||||||
seq2  AAAAAAAAAAGAATTC  857