BAC Information

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BAC

Clone NameB6Ng01-169J14
Chromosome8 (Build37)
Map Location 108,964,049 - 109,115,617
singlet/doubletdoublet
Overlap gene6030452D12Rik, Cdh3, LOC100042734
Upstream geneLrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90
Downstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J14.bB6Ng01-169J14.g
ACCDH960534DH960535
length2841,123
definitionDH960534|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J14, 5' end.DH960535|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,964,049 - 108,964,330)(109,114,497 - 109,115,617)
sequence
gaattcagctctgttcttaggtcacacagcaaccacatggcctgggggtg
tgggtgtgggtgggggtgtctcatatagaagcgtgtttgccttttaggca
ccacactctgagtttgagccccagcactgcatacaccaggcagattgttt
acaaacctgtaatcctagacctctgaatatacaggcaggaggatcaccct
cagcaacatagacagttcaaggccagcctgaaatacatgagaccttgttt
caaaaactagcagtcacagaacaattcgaaaatc
gaattcattctgtagatcaggctggcctcaaactcagatctgcctgcctc
tgtctcttaagtgctgggattaaaggtaggtaccgccacacctgggctat
ttatttttacttatgtgtatgtgtacatgtgtatcgacacctttaaaagt
caaaagacagtgttggatcccctggtactggacttatatggagttatagg
cagttatgagctgcccaatgtgggttctgggaatcaaactcaggtcctct
gcaagagcagcatgctctcctaaccactgagtcctcctcacacacacaca
cacacatatttgccacttatttacctgtctgtttgtttgtttgttttgag
agaaggtttctttgtgtaaccttggctatcctggaactggctctgaagac
caaagctgtccttgaactcacagacatccaccgacctcagcctcctgagt
gctgggattaaaggtatacaccaccattgcctggcttattttttatgttt
tgattgttgttattgttttgttttgagatagggtctcaaggacccccagg
ctggcccccaaactcactgtgaaactgaggataaccaggaacttctgaat
ctcctgcctctcccttccctgtgctgaggttacagatgcgcactgtcaaa
tgctccatctatggtactggtgactgaacccggggctttttgcatgttaa
actattgtggtatcaactgagctacatcctcaaccctttccttttcattc
tgatgcggtccacttagttgctcaagctggtagcctagcaggtcttaaac
ctgtaattctcctgtcttggatttctaggtagctgtggttacagcctaca
tcactgactctaacgcttgcttaatttaccgtctgttgccctggccggaa
ctctagtcctagagtagccagaggaggaggcaggcaaatggcagagacta
aagtactgctattagtgttcttggaaaggttggaaatctaagatagagtt
tttgtctattttcttttacagcgttgttccaccaggaagaattttccagt
atgccggagggctgggaagataacccctaaagagagatggctccaaggac
aggtggggaacagtttattcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108964049_108964330
seq2: B6Ng01-169J14.b_40_322

seq1  GAATTCAGCTCTGTTCTTAGGTCACACAGCAACCACATGGCCTGGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCTGTTCTTAGGTCACACAGCAACCACATGGCCTGGGGGTG  50

seq1  TGGGTGTGGGTGGGGGTGTCTCAGAAAGTAGCGTGTTTGCCTTTTAGGCA  100
      ||||||||||||||||||||||| | || |||||||||||||||||||||
seq2  TGGGTGTGGGTGGGGGTGTCTCATATAGAAGCGTGTTTGCCTTTTAGGCA  100

seq1  CCACACTCTGAGTTTGAGCCCCAGCACTGCATACACCAGGCAGATTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCTGAGTTTGAGCCCCAGCACTGCATACACCAGGCAGATTGTTT  150

seq1  ACAAACCTGTAATCCTAGCCCTCTGAAGATACAGGCAGGAGGATCACCCT  200
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  ACAAACCTGTAATCCTAGACCTCTGAATATACAGGCAGGAGGATCACCCT  200

seq1  CAGCAGCATAGACAGTTCAAGGCCAGCCTGAAATACATGAGACCTTGTTT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACATAGACAGTTCAAGGCCAGCCTGAAATACATGAGACCTTGTTT  250

seq1  CAAAAACTAGCAGTCACAG-ACAATTCGTAAAT  282
      ||||||||||||||||||| |||||||| ||||
seq2  CAAAAACTAGCAGTCACAGAACAATTCGAAAAT  283

seq1: chr8_109114497_109115617
seq2: B6Ng01-169J14.g_69_1191 (reverse)

seq1  CAAG-ATAAACTG-TCCCCA-CTGTCCTTGGAGCCAATCCTCCTTTAGGG  47
      |||| |||||||| |||||| |||||||||||||||   ||| ||  |||
seq2  CAAGAATAAACTGTTCCCCACCTGTCCTTGGAGCCATCTCTCTTTAGGGG  50

seq1  TTACTATCCCAGCCCT-CAGCATACTGGAAAATTCTTCCTTGGTGG-ACA  95
      |||   |||||||||| | |||||||||||||||||||| |||||| |||
seq2  TTATCTTCCCAGCCCTCCGGCATACTGGAAAATTCTTCC-TGGTGGAACA  99

seq1  ACGCTGT-AGAGAAAATAGACAAAAACTCTATC-TAGATTTCCAACCTTT  143
      ||||||| | ||||||||||||||||||||||| ||||||||||||||||
seq2  ACGCTGTAAAAGAAAATAGACAAAAACTCTATCTTAGATTTCCAACCTTT  149

seq1  CCAAGGACACTAATAGCAGTACTTTAGTCTCTTGCCATTTGCCTGCCTCC  193
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAAGAACACTAATAGCAGTACTTTAGTCTC-TGCCATTTGCCTGCCTCC  198

seq1  TCCTCTTGGCTACTCTAGGACTAGAGTTCCGGCCAGGGCAACAGACGGTA  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTC-TGGCTACTCTAGGACTAGAGTTCCGGCCAGGGCAACAGACGGTA  247

seq1  AATTAAGCAAGCGTTAGAGTCAGTGATGTAGGCTGTAACCACAGCTACCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCAAGCGTTAGAGTCAGTGATGTAGGCTGTAACCACAGCTACCT  297

seq1  AGAAATCCAAGACAGGAGAATTACAGGTTTAAGACCTGCCTAGGCTACCA  343
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAATCCAAGACAGGAGAATTACAGGTTTAAGACCTG-CTAGGCTACCA  346

seq1  GCTTGAGCAACTAAGTGGACCTGCATCAGAATGAAAAGGAAAGGGTTGAG  393
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTTGAGCAACTAAGTGGACC-GCATCAGAATGAAAAGGAAAGGGTTGAG  395

seq1  GATGTAGCTCAGTTGATACCACAATAGTTTAACATGCAAAAAGCCCCGGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGCTCAGTTGATACCACAATAGTTTAACATGCAAAAAGCCCCGGG  445

seq1  TTCAGTCACCAGTACCATAGATGGAGCATTTGACAGTGCGCATCTGTAAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCACCAGTACCATAGATGGAGCATTTGACAGTGCGCATCTGTAAC  495

seq1  CTCAGCACAGGGAAGGGAGAGGCAGGAGATTCAGAAGTTCCTGGTTATCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACAGGGAAGGGAGAGGCAGGAGATTCAGAAGTTCCTGGTTATCC  545

seq1  TCAGTTTCACAGTGAGTTTGGGGGCCAGCCTGGGGGTCCTTGAGACCCTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCACAGTGAGTTTGGGGGCCAGCCTGGGGGTCCTTGAGACCCTA  595

seq1  TCTCAAAACAAAACAATAACAACAATCAAAACATAAAAAATAAGCCAGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAACAAAACAATAACAACAATCAAAACATAAAAAATAAGCCAGGC  645

seq1  AATGGTGGTGTATACCTTTAATCCCAGCACTCAGGAGGCTGAGGTCGGTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGTGTATACCTTTAATCCCAGCACTCAGGAGGCTGAGGTCGGTG  695

seq1  GATGTCTGTGAGTTCAAGGACAGCTTTGGTCTTCAGAGCCAGTTCCAGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGTGAGTTCAAGGACAGCTTTGGTCTTCAGAGCCAGTTCCAGGA  745

seq1  TAGCCAAGGTTACACAAAGAAACCTTCTCTCAAAACAAACAAACAAACAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAGGTTACACAAAGAAACCTTCTCTCAAAACAAACAAACAAACAG  795

seq1  ACAGGTAAATAAGTGGCAAATATGTGTGTGTGTGTGTGTGAGGAGGACTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAATAAGTGGCAAATATGTGTGTGTGTGTGTGTGAGGAGGACTC  845

seq1  AGTGGTTAGGAGAGCATGCTGCTCTTGCAGAGGACCTGAGTTTGATTCCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAGGAGAGCATGCTGCTCTTGCAGAGGACCTGAGTTTGATTCCC  895

seq1  AGAACCCACATTGGGCAGCTCATAACTGCCTATAACTCCATATAAGTCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACATTGGGCAGCTCATAACTGCCTATAACTCCATATAAGTCCA  945

seq1  GTACCAGGGGATCCAACACTGTCTTTTGACTTTTAAAGGTGTCGATACAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGGGATCCAACACTGTCTTTTGACTTTTAAAGGTGTCGATACAC  995

seq1  ATGTACACATACACATAAGTAAAAATAAATAGCCCAGGTGTGGCGGTACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACATACACATAAGTAAAAATAAATAGCCCAGGTGTGGCGGTACC  1045

seq1  TACCTTTAATCCCAGCACTTAAGAGACAGAGGCAGGCAGATCTGAGTTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAATCCCAGCACTTAAGAGACAGAGGCAGGCAGATCTGAGTTTG  1095

seq1  AGGCCAGCCTGATCTACAGAATGAATTC  1121
      ||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGATCTACAGAATGAATTC  1123