BAC Information

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BAC

Clone NameB6Ng01-170B21
Chromosome8 (Build37)
Map Location 107,010,826 - 107,011,909
singlet/doubletsinglet
Overlap geneCcdc79
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2
Downstream geneAppbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170B21.bB6Ng01-170B21.g
ACCDH960913DH960914
length1,1461,168
definitionDH960913|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B21, 5' end.DH960914|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttgtagatcaggctggcttcaaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggtgtgtgccaccaccgcccggcc
atttacactttttatatttacttaatgtgtttgtgtgtgcacttacacat
gtgtcatggtgcacacatacaggtcaaaggaccactttatttctcatttc
accacatgggttccaggattgaacacaggttgtcaggcgtggctgcgggc
acctctccctgctgatacatctcatggttcaagggactacatctcaacaa
tttttaggtcttcaggactcagcacacaggaggtattcagttactgctta
ttaagtaggcagctaggggctgaagagatggcttagtagttaagagaact
tgctggtcttataggtgactcaggtacacttcctaccactaacatcatag
ctcacagtcacctgtatgtcaagttccaggatatccaacatcttcttgtg
gtttctatggctactaggcacacacatggtatacataaaaacattaaggt
aaaacactcatatacataaaacacatctctaaaagctcagccatctactt
tttggcctgatggtgaatgtgaagacttcctattacaagaatttacagac
taccattctaaatgatcgcacaaatgagaagcagatgtgtctgtggctca
tgtgtacacctggtatgtcagccatcaccctggtcacataaaggcatgat
ctcgttctttaagctttatgtataggtatgcatctctatataagaagatg
caatgagtgtgcaggagaagatgtcggatccctggagctggagttatagg
tggttgtgagccatccaacttgggtgctgggaacaaaatttaggtcctct
gggaaagtagccagagctctaactgctgaaccacctccatagctcaatcc
aatattacacaattcccaaaatttataaattgagtttccatttctgatat
ctcatgtcttttgatttgtcatctaaaattttttttattagttgcttttt
cttttagacaagtcttcactgtgtgattcctggctgggatgcagaggtca
tagcaggtaccacccacatcagaaaaactttttttaggtttatttt
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccccgcaatacctctcctgggcgtatatcc
agatgtcccaaccagtaagaaggacacatgctccactatgttcatagcag
ctttgtttataatagccagaagctggaaagaacccagatgccccccaaca
gaggaatggatacagaaaatgtggtacatttacacaatggaatactactc
agctattaaaaaaaatgaatttatgaaattcctaggcaaatggatggacc
tggagggtatcatcctgagtgaagtaacccaatcacaaaggaactcgcac
aatatgtactcactgataagtggatattagcccagaaacttagggtaccc
aagatataagatacaaattgccaaacgcatgaaatccaagaagaacgaag
accaaagtgtggacactttaccctttcttagaaatgggaacaaaacaccc
atggaaggagttacagagacaaaatttggagctgtgacgaaaggatggac
cacctagtgattgccatatgcagggatccatcccataatcagcttccaaa
tgctgacaccattgcatacactagcaagattttgctgaaaggacccagat
atagctctctcttgtgagactatgcccggggcctagcaaacacagaagta
gatgatcacagtcagctattggatgggtcacacggcctccaatggaggag
ctagagaatttacccaaggagctaaagggaactgcatcctattaggtgga
acaacaatattgaactatcagtacctgggagctcttgtctttagcctgca
atatgtatcaaagatggcctagtcgccatcacttgcaaagaagtccaatg
acttacaatctttaatgtccgatccggggaagtgcaagtcacactggaga
ttgctttgctaggcgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107010826_107011909
seq2: B6Ng01-170B21.b_121_1189

seq1  GTGTGTGCCACCACCGCCCGGCCATTTACACTTTTTATATTTACTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCACCACCGCCCGGCCATTTACACTTTTTATATTTACTTAATG  50

seq1  TGTTTGTGTGTGCACTTACACATGTGTCATGGTGCACACATACAGGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTGCACTTACACATGTGTCATGGTGCACACATACAGGTCAA  100

seq1  AGGACCACTTTATTTCTCATTTCACCACATGGGTTCCAGGATTGAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACTTTATTTCTCATTTCACCACATGGGTTCCAGGATTGAACACA  150

seq1  GGTTGTCAGGCGTGGCTGCGGGCACCTCTCCCTGCTGATACATCTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCAGGCGTGGCTGCGGGCACCTCTCCCTGCTGATACATCTCATGG  200

seq1  TTCAAGGGACTACATCTCAACAATTTTTAGGTCTTCAGGACTCAGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGACTACATCTCAACAATTTTTAGGTCTTCAGGACTCAGCACAC  250

seq1  AGGAGGTATTCAGTTACTGCTTATTAAGTAGGCAGCTAGGGGCTGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTATTCAGTTACTGCTTATTAAGTAGGCAGCTAGGGGCTGAAGAG  300

seq1  ATGGCTTAGTAGTTAAGAGAACTTGCTGGTCTTATAGGTGACTCAGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTAGTAGTTAAGAGAACTTGCTGGTCTTATAGGTGACTCAGGTAC  350

seq1  ACTTCCTACCACTAACATCATAGCTCACAGTCACCTGTATGTCAAGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTACCACTAACATCATAGCTCACAGTCACCTGTATGTCAAGTTCC  400

seq1  AGGATATCCAACATCTTCTTGTGGTTTCTATGGCTACTAGGCACACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATCCAACATCTTCTTGTGGTTTCTATGGCTACTAGGCACACACAT  450

seq1  GGTATACATAAAAACATTAAGGTAAAACACTCATATACATAAAACACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACATAAAAACATTAAGGTAAAACACTCATATACATAAAACACATC  500

seq1  TCTAAAAGCTCAGCCATCTACTTTTTGGCCTGATGGTGAATGTGAAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGCTCAGCCATCTACTTTTTGGCCTGATGGTGAATGTGAAGACT  550

seq1  TCCTATTACAAGAATTTACAGACTACCATTCTAAATGATCGCACAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTACAAGAATTTACAGACTACCATTCTAAATGATCGCACAAATGA  600

seq1  GAAGCAGATGTGTCTGTGGCTCATGTGTACACCTGGTATGTCAGCCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGATGTGTCTGTGGCTCATGTGTACACCTGGTATGTCAGCCATCA  650

seq1  CCCTGGTCACATAAAGGCATGATCTCGTTCTTTAAGCTTTATGTATAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCACATAAAGGCATGATCTCGTTCTTTAAGCTTTATGTATAGGT  700

seq1  ATGCATCTCTATATAAGAAGATGCAATGAGTGTGCAGGAGAAGATGTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTCTATATAAGAAGATGCAATGAGTGTGCAGGAGAAGATGTCGG  750

seq1  ATCCCTGGAGCTGGAGTTATAGGTGGTTGTGAGCCATCCAACTTGGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGAGCTGGAGTTATAGGTGGTTGTGAGCCATCCAACTTGGGTGC  800

seq1  TGGGAACAAAATTTAGGTCCTCTGGGAAAGTAGCCAGAGCTCTTAACTGC  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGAACAAAATTTAGGTCCTCTGGGAAAGTAGCCAGAGCTC-TAACTGC  849

seq1  TGAACCACCTCCATAGCTCAAATCCAATTATTTACACAATTCCCAAAATT  900
      ||||||||||||||||||| ||||||||   ||||||||||||||||| |
seq2  TGAACCACCTCCATAGCTC-AATCCAAT--ATTACACAATTCCCAAAA-T  895

seq1  TTATAAATTGAGTTTCCATTTCTGATATCTCAATGTCTTTTGATTTGTCA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTATAAATTGAGTTTCCATTTCTGATATCTC-ATGTCTTTTGATTTGTCA  944

seq1  TCTAAAATTTTTTTTATTAAGGTTGCTTTTTCTTTTTAAAGACAAAGTC-  999
      |||||||||||||||||||  |||||||||||||||   |||| ||||| 
seq2  TCTAAAATTTTTTTTATTA--GTTGCTTTTTCTTTT---AGAC-AAGTCT  988

seq1  TCACTGTGTGA-TCCTGGCTGGGATGCAGAGGGTCCATAGCAGGCACCA-  1047
      ||||||||||| ||||||||||||||||||||   ||||||||| |||| 
seq2  TCACTGTGTGATTCCTGGCTGGGATGCAGAGG--TCATAGCAGGTACCAC  1036

seq1  CCACATCTAGATAACTTTTTTTTTATGTATTTATTTT  1084
      |||||||   | |||  |||||||| |  ||||||||
seq2  CCACATCAGAAAAAC--TTTTTTTAGG--TTTATTTT  1069