BAC Information

Click to search

BAC

Clone NameB6Ng01-170B24
Chromosome8 (Build37)
Map Location 125,438,114 - 125,529,429
singlet/doubletdoublet
Overlap geneAnkrd11
Upstream geneBC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15
Downstream geneSpg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170B24.bB6Ng01-170B24.g
ACCDH960919DH960920
length6931,069
definitionDH960919|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B24, 5' end.DH960920|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,528,737 - 125,529,429)(125,438,114 - 125,439,182)
sequence
gaattcaatcactgagccacccatgtcatttgtgctagttactcctaaaa
aaggattgcctgtcagtgtctggaggactatatcacaagccacgtcagtg
tttttgtaatcacttacttggtttaatagtttcctcaaagtgtagtttta
tgcttctagaatttgtattaacagttttagtctaagatgatgtgtgcatt
tcacaagttaatttactctaaaccctgacttgaagaagttaggtaaccta
taaccacatggttcagatagtagccaatgtagcttgggatgcaatggcag
tgacaggaactgactccattgttagtcttctgcattcccttttgcacatc
cagatttcagcctactttcattttccttctggctgagggcttcctttaaa
gtctctttaaaataatatttttattacatatatttatttttgtgcatgtc
tcttagtaaaatgcttacggatagaattttgtgatgacctttgtgtagag
gtcagaggacaacttgatcctccagtgtggtcctggcttgcagcaccctt
tacctggatagccatcttgtaggaccccccgcccagtatgtctcaaggac
attccagtgataaatgccttcagcttttgtttcagaacatgtttattttt
ctttgctttaaaaaagcccgtgtgtgtgtgtgtgtgtgtgtgt
gaattctttaacagacaagagcagcagtcagccaggatggagagcatcta
taaaccgaagactcagaaggcagtgaggaaaactcagggaagggaggggg
agacttggatagttaagtgcaaggtgctccacactgtcacacagctgagg
tgaagagtaggcaggagctgcactaagacaggaatggctgagtctgagca
aggctccaacacaaggcagtgggagtagggtgcttctctgacctgaatgc
ccacagactcagcagtatgtgatgtttctgaagccagcctagtgagagtc
ttttttaaaaagtctaggaaacgacagtgcagcctttccccttgttcctg
ctctacaactatctgactttgttgcatggaaacttctatgaatatacctg
aaaaccatgcctttgcatctattcggtgtgaaactgtccccaaaagtaag
ttcatgctacatggatactcaagggtcccagaggcccctttatctgttct
ttttaaacagcagctacatatgtcatgttcacaaaccacttcacagtgaa
ccgaatgagcagatcatgtgactctgcagtgtctgcctgtataccacagc
acttgctagtgattacagggggagtattagcaacatgcagaaagaatcaa
aatgaaggctcacttacagcaagccagagctgggaccctctcacagacac
agccaaggtgccaagacaatcaggagggcggaccagaaatgacagcaata
aaacttgaggaaaatcaccttataaaaacatgaggtcaagccgggcatgg
tggcgcacacctttaatcccagcactcagagggcagaggcaagcggattt
ctgagttcaaggccagcctggtctacagagtgagttccaggacaaccagg
gctacacagagaaaccctgtcttgaaaaactcaaaaccaaacaaacaaca
aaacaaacaaacatgagatcagttctgagagtgtgtcagacttcatctca
ctggctcagatgctgtcgtacacagcaaggaaaccagatcccagggacaa
ctcatggggcttggacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125528737_125529429
seq2: B6Ng01-170B24.b_46_738 (reverse)

seq1  ACACACACACACACACACACACACGGGCTTTTTTAAAGCAAAGAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACGGGCTTTTTTAAAGCAAAGAAAAATA  50

seq1  AACATGTTCTGAAACAAAAGCTGAAGGCATTTATCACTGGAATGTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCTGAAACAAAAGCTGAAGGCATTTATCACTGGAATGTCCTTG  100

seq1  AGACATACTGGGCGGGGGGTCCTACAAGATGGCTATCCAGGTAAAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACTGGGCGGGGGGTCCTACAAGATGGCTATCCAGGTAAAGGGTG  150

seq1  CTGCAAGCCAGGACCACACTGGAGGATCAAGTTGTCCTCTGACCTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGCCAGGACCACACTGGAGGATCAAGTTGTCCTCTGACCTCTACA  200

seq1  CAAAGGTCATCACAAAATTCTATCCGTAAGCATTTTACTAAGAGACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCATCACAAAATTCTATCCGTAAGCATTTTACTAAGAGACATGC  250

seq1  ACAAAAATAAATATATGTAATAAAAATATTATTTTAAAGAGACTTTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAAATATATGTAATAAAAATATTATTTTAAAGAGACTTTAAAG  300

seq1  GAAGCCCTCAGCCAGAAGGAAAATGAAAGTAGGCTGAAATCTGGATGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCAGCCAGAAGGAAAATGAAAGTAGGCTGAAATCTGGATGTGC  350

seq1  AAAAGGGAATGCAGAAGACTAACAATGGAGTCAGTTCCTGTCACTGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAATGCAGAAGACTAACAATGGAGTCAGTTCCTGTCACTGCCAT  400

seq1  TGCATCCCAAGCTACATTGGCTACTATCTGAACCATGTGGTTATAGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCAAGCTACATTGGCTACTATCTGAACCATGTGGTTATAGGTTA  450

seq1  CCTAACTTCTTCAAGTCAGGGTTTAGAGTAAATTAACTTGTGAAATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTCTTCAAGTCAGGGTTTAGAGTAAATTAACTTGTGAAATGCAC  500

seq1  ACATCATCTTAGACTAAAACTGTTAATACAAATTCTAGAAGCATAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCTTAGACTAAAACTGTTAATACAAATTCTAGAAGCATAAAACT  550

seq1  ACACTTTGAGGAAACTATTAAACCAAGTAAGTGATTACAAAAACACTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGAGGAAACTATTAAACCAAGTAAGTGATTACAAAAACACTGAC  600

seq1  GTGGCTTGTGATATAGTCCTCCAGACACTGACAGGCAATCCTTTTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTGATATAGTCCTCCAGACACTGACAGGCAATCCTTTTTTAGG  650

seq1  AGTAACTAGCACAAATGACATGGGTGGCTCAGTGATTGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTAGCACAAATGACATGGGTGGCTCAGTGATTGAATTC  693

seq1: chr8_125438114_125439182
seq2: B6Ng01-170B24.g_65_1133

seq1  GAATTCTTTAACAGACAAGAGCAGCAGTCAGCCAGGATGGAGAGCATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACAGACAAGAGCAGCAGTCAGCCAGGATGGAGAGCATCTA  50

seq1  TAAACCGAAGACTCAGAAGGCAGTGAGGAAAACTCAGGGAAGGGAGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGAAGACTCAGAAGGCAGTGAGGAAAACTCAGGGAAGGGAGGGGG  100

seq1  AGACTTGGATAGTTAAGTGCAAGGTGCTCCACACTGTCACACAGCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGATAGTTAAGTGCAAGGTGCTCCACACTGTCACACAGCTGAGG  150

seq1  TGAAGAGTAGGCAGGAGCTGCACTAAGACAGGAATGGCTGAGTCTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTAGGCAGGAGCTGCACTAAGACAGGAATGGCTGAGTCTGAGCA  200

seq1  AGGCTCCAACACAAGGCAGTGGGAGTAGGGTGCTTCTCTGACCTGAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAACACAAGGCAGTGGGAGTAGGGTGCTTCTCTGACCTGAATGC  250

seq1  CCACAGACTCAGCAGTATGTGATGTTTCTGAAGCCAGCCTAGTGAGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACTCAGCAGTATGTGATGTTTCTGAAGCCAGCCTAGTGAGAGTC  300

seq1  TTTTTTAAAAAGTCTAGGAAACGACAGTGCAGCCTTTCCCCTTGTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAGTCTAGGAAACGACAGTGCAGCCTTTCCCCTTGTTCCTG  350

seq1  CTCTACAACTATCTGACTTTGTTGCATGGAAACTTCTATGAATATACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAACTATCTGACTTTGTTGCATGGAAACTTCTATGAATATACCTG  400

seq1  AAAACCATGCCTTTGCATCTATTCGGTGTGAAACTGTCCCCAAAAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATGCCTTTGCATCTATTCGGTGTGAAACTGTCCCCAAAAGTAAG  450

seq1  TTCATGCTACATGGATACTCAAGGGTCCCAGAGGCCCCTTTATCTGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTACATGGATACTCAAGGGTCCCAGAGGCCCCTTTATCTGTTCT  500

seq1  TTTTAAACAGCAGCTACATATGTCATGTTCACAAACCACTTCACAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAGCAGCTACATATGTCATGTTCACAAACCACTTCACAGTGAA  550

seq1  CCGAATGAGCAGATCATGTGACTCTGCAGTGTCTGCCTGTATACCACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATGAGCAGATCATGTGACTCTGCAGTGTCTGCCTGTATACCACAGC  600

seq1  ACTTGCTAGTGATTACAGGGGGAGTATTAGCAACATGCAGAAAGAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAGTGATTACAGGGGGAGTATTAGCAACATGCAGAAAGAATCAA  650

seq1  AATGAAGGCTCACTTACAGCAAGCCAGAGCTGGGACCCTCTCACAGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCTCACTTACAGCAAGCCAGAGCTGGGACCCTCTCACAGACAC  700

seq1  AGCCAAGGTGCCAAGACAATCAGGAGGGCGGACCAGAAATGACAGCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGTGCCAAGACAATCAGGAGGGCGGACCAGAAATGACAGCAATA  750

seq1  AAACTTGAGGAAAATCACCTTATAAAAACATGAGGTCAAGCCGGGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAGGAAAATCACCTTATAAAAACATGAGGTCAAGCCGGGCATGG  800

seq1  TGGCGCACACCTTTAATCCCAGCACTCAGAAGGCAGAGGCAAGCGGATTT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGCGCACACCTTTAATCCCAGCACTCAGAGGGCAGAGGCAAGCGGATTT  850

seq1  CTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGG  900

seq1  GCTACACAGAGAAACCCTGTCTTGAAAAAACCAAAACCAAACAAAACAAC  950
      |||||||||||||||||||||||||||||  ||||||||||| |||||||
seq2  GCTACACAGAGAAACCCTGTCTTGAAAAACTCAAAACCAAAC-AAACAAC  949

seq1  AAAAACAAACAAACATGAGATCAGTTCTGAGAGTGTGTCAGACTTCATCT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAACAAACAAACATGAGATCAGTTCTGAGAGTGTGTCAGACTTCATCT  998

seq1  CACTGGCTCAGATGCTGTCGTACCACAGCAAGAAACCCAG-TCCCA-GGA  1048
      |||||||||||||||||||||| ||||||||| || |||| ||||| |||
seq2  CACTGGCTCAGATGCTGTCGTA-CACAGCAAGGAAACCAGATCCCAGGGA  1047

seq1  CAACTCAT-GGGCTTGGACATA  1069
      |||||||| |||||||||||||
seq2  CAACTCATGGGGCTTGGACATA  1069