BAC Information

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BAC

Clone NameB6Ng01-170I12
Chromosome8 (Build37)
Map Location 97,851,452 - 98,023,651
singlet/doubletdoublet
Overlap geneZfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik
Upstream geneSlc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik
Downstream geneCcdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170I12.bB6Ng01-170I12.g
ACCDH961221DH961222
length1,0491,098
definitionDH961221|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I12, 5' end.DH961222|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,022,597 - 98,023,651)(97,851,452 - 97,852,562)
sequence
gaattccatgacaaccagggctacacagagaaaccctgtctcgaaaaaac
aaaacaaaaaattaaattaaatgaaattttaaaaaaagaagaagaagata
cctacagtgagcctttgagtggaagagaggtgatgtaggattaaagtggg
ggcataggctatgggttgccccattgtaacgggataggcaactttaagca
agagggtagatgtgaactggcttctgcagagaaagctggctggatgccat
gatggatttgatgagtgggaggctgacgataatcctgagcaggactaaga
catgcttcaaagagcaactaactggcaggggaaagctggtgcctttgcaa
ggctcagtgggcattattcctgtagagttcagcctatttggctgcaaatg
ccctgctcagccaagcacactggaagccacttcagggaaaagactgcaaa
tcttccttcatgtttcctcacctgaaaccccagattgaaggttcatctgt
taggtgtcttcatcctgacccggttaaaatgcaagtccctttgagaaagc
attgagaatcctgtatttacaatgtttaaggctagagatacttcagattt
tgttagatttggggatattctcatatgcataatgaaatatcttgggagat
gggacctaagtcaaaacaggaaactcacttccatctcctatgtatgcaca
caacctagggggtgattctgtactgtgtttttggtaaagttgctcacccg
aaatataaagttgtatgatactcaaaaagttttggatgtagtgctggaga
gctagcttaagcagcaaagggcttgctatacaaacgtgaaaatctgaatt
ttgattcctagaacccacataaagtcaggatgatggcacatacctgtaac
cgcagcactgggggagtggaggcaggcaggttcctggagctcattgatca
gcagccagcctggcccaagagatgatgtcagttcagagagcccccttaaa
ataacaatgggagaacattcagtaaagacacctcaacttgacttcttac
gaattcaagttccctacaggtaaggggtgtagcaggttctcagaaagcaa
gtcctgtcatggggaagaagtggatggaattggggtctggccactgcagt
ttggctcttcccacggccaggctggtgctaagaataccgaacatgcgcac
cctccacctgcccagaagagccctttggtcccgactcctgaggaggcagc
tgactgacaggcttgctgccatgcagctgcaagcaggcaagactagacag
ggcaggtggcggcgggcaccgaggccttagggcaagcaggctgccacctg
gtaggcgccctccgcggctgcggcggcagcactgtgctgggcactgtgct
cctgtagcagcgccacatccagaaagcgttcgccgcaccacacacacttg
aactgctgctctcgggcatgcacgccctggtgcttgttgagatgctctcg
ctgcttgaaggctttatcgcagctagggcacttgtagggcttctcgcccg
tgtgcacccgccggtggcgttgcaggtctgaggcatacttgaagcgcttc
tcgcagtccggacacttgagcggcttctcccgggccgggtcacagcggtg
ctgcacgaactccgaggaagaaaaaaagcggcgctcgcacagggtgcacc
gcagaggcttctcggcggcagcgcagtgggacagctggtgcttctgcaga
gcggatgcccgcttgtaggccttgttacacacggggcacttgaaagggcc
gctcggtggaggttggcaggcacttgtgccgcagcagctcggccgactgg
tcgaagcccttctggcacaccgggcacttgaacagagtctccagggtgtg
cacgtgctggtggtagagcaggtggctgggctggccgaagccctttctcg
cacaggccgcattaaagggtcttccgtcttgtgtgtgcgcggtggcgcac
agtgcgtactgcttgtatgaagccatggggcacagatcacactgaagggc
tctctcactgtgcgtgcgctcatgctgccgaggtcctacggcgctgaagg
cttctgggatctcgcgcaacgtagggcgctcccgctcggggtaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_98022597_98023651
seq2: B6Ng01-170I12.b_50_1098 (reverse)

seq1  GTAAGAGGTCAAGGTTGA-GTGTCTTTACTGAATTGTTCT-CCATTGTTA  48
      |||||| ||||| ||||| |||||||||||||| |||||| |||||||||
seq2  GTAAGAAGTCAA-GTTGAGGTGTCTTTACTGAA-TGTTCTCCCATTGTTA  48

seq1  TTTTAGGGGGGCTCTCCTGAACCTGACATTCATCTCTTGGGCCAGGCTGG  98
      ||||| ||||||||| ||||| |||||| |||||||||||||||||||||
seq2  TTTTAAGGGGGCTCT-CTGAA-CTGACA-TCATCTCTTGGGCCAGGCTGG  95

seq1  CTGGCTGATCAATGAGCTCCAGGAACCTGCCTGCCTCCACTCCCCCAGTG  148
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-GCTGATCAATGAGCTCCAGGAACCTGCCTGCCTCCACTCCCCCAGTG  144

seq1  CTGCGGTTACAGGTATGTGCCATCATTCCTGACTTTTATGTGGGTTCTAG  198
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CTGCGGTTACAGGTATGTGCCATCA-TCCTGAC-TTTATGTGGGTTCTAG  192

seq1  GAATCAAAATTCAGATTTTCACGTTTGTATAGCAAGCCCTTTGCTGCTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAATTCAGATTTTCACGTTTGTATAGCAAGCCCTTTGCTGCTTA  242

seq1  AGCTAGCTCTCCAGCACTACATCCAAAACTTTTTGAGTATCATACAACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTCTCCAGCACTACATCCAAAACTTTTTGAGTATCATACAACTT  292

seq1  TATATTTCGGGTGAGCAACTTTACCAAAAACACAGTACAGAATCACCCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCGGGTGAGCAACTTTACCAAAAACACAGTACAGAATCACCCCC  342

seq1  TAGGTTGTGTGCATACATAGGAGATGGAAGTGAGTTTCCTGTTTTGACTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTGTGCATACATAGGAGATGGAAGTGAGTTTCCTGTTTTGACTT  392

seq1  AGGTCCCATCTCCCAAGATATTTCATTATGCATATGAGAATATCCCCAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCATCTCCCAAGATATTTCATTATGCATATGAGAATATCCCCAAA  442

seq1  TCTAACAAAATCTGAAGTATCTCTAGCCTTAAACATTGTAAATACAGGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAAATCTGAAGTATCTCTAGCCTTAAACATTGTAAATACAGGAT  492

seq1  TCTCAATGCTTTCTCAAAGGGACTTGCATTTTAACCGGGTCAGGATGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGCTTTCTCAAAGGGACTTGCATTTTAACCGGGTCAGGATGAAG  542

seq1  ACACCTAACAGATGAACCTTCAATCTGGGGTTTCAGGTGAGGAAACATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAACAGATGAACCTTCAATCTGGGGTTTCAGGTGAGGAAACATGA  592

seq1  AGGAAGATTTGCAGTCTTTTCCCTGAAGTGGCTTCCAGTGTGCTTGGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATTTGCAGTCTTTTCCCTGAAGTGGCTTCCAGTGTGCTTGGCTG  642

seq1  AGCAGGGCATTTGCAGCCAAATAGGCTGAACTCTACAGGAATAATGCCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCATTTGCAGCCAAATAGGCTGAACTCTACAGGAATAATGCCCA  692

seq1  CTGAGCCTTGCAAAGGCACCAGCTTTCCCCTGCCAGTTAGTTGCTCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTTGCAAAGGCACCAGCTTTCCCCTGCCAGTTAGTTGCTCTTTG  742

seq1  AAGCATGTCTTAGTCCTGCTCAGGATTATCGTCAGCCTCCCACTCATCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTCTTAGTCCTGCTCAGGATTATCGTCAGCCTCCCACTCATCAA  792

seq1  ATCCATCATGGCATCCAGCCAGCTTTCTCTGCAGAAGCCAGTTCACATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCATGGCATCCAGCCAGCTTTCTCTGCAGAAGCCAGTTCACATCT  842

seq1  ACCCTCTTGCTTAAAGTTGCCTATCCCGTTACAATGGGGCAACCCATAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTGCTTAAAGTTGCCTATCCCGTTACAATGGGGCAACCCATAGC  892

seq1  CTATGCCCCCACTTTAATCCTACATCACCTCTCTTCCACTCAAAGGCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCCCACTTTAATCCTACATCACCTCTCTTCCACTCAAAGGCTCA  942

seq1  CTGTAGGTATCTTCTTCTTCTTTTTTTAAAATTTCATTTAATTTAATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTATCTTCTTCTTCTTTTTTTAAAATTTCATTTAATTTAATTTT  992

seq1  TTGTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCAT  1042

seq1  GGAATTC  1055
      |||||||
seq2  GGAATTC  1049

seq1: chr8_97851452_97852562
seq2: B6Ng01-170I12.g_68_1165

seq1  GAATTCAAGTTCCCTACAGGTAAGGGGTGTAGCAGGTTCTCAGAAAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCCCTACAGGTAAGGGGTGTAGCAGGTTCTCAGAAAGCAA  50

seq1  GTCCTGTCATGGGGAAGAAGTGGATGGAATTGGGGTCTGGCCACTGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCATGGGGAAGAAGTGGATGGAATTGGGGTCTGGCCACTGCAGT  100

seq1  TTGGCTCTTCCCACGGCCAGGCTGGTGCTAAGAATACCGAACATGCGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTTCCCACGGCCAGGCTGGTGCTAAGAATACCGAACATGCGCAC  150

seq1  CCTCCACCTGCCCAGAAGAGCCCTTTGGTCCCGACTCCTGAGGAGGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCTGCCCAGAAGAGCCCTTTGGTCCCGACTCCTGAGGAGGCAGC  200

seq1  TGACTGACAGGCTTGCTGCCATGCAGCTGCAAGCAGGCAAGACTAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACAGGCTTGCTGCCATGCAGCTGCAAGCAGGCAAGACTAGACAG  250

seq1  GGCAGGTGGCGGCGGGCACCGAGGCCTTAGGGCAAGCAGGCTGCCACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGCGGCGGGCACCGAGGCCTTAGGGCAAGCAGGCTGCCACCTG  300

seq1  GTAGGCGCCCTCCGCGGCTGCGGCGGCAGCACTGTGCTGGGCACTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCGCCCTCCGCGGCTGCGGCGGCAGCACTGTGCTGGGCACTGTGCT  350

seq1  CCTGTAGCAGCGCCACATCCAGAAAGCGTTCGCCGCACCACACACACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCAGCGCCACATCCAGAAAGCGTTCGCCGCACCACACACACTTG  400

seq1  AACTGCTGCTCTCGGGCATGCACGCCCTGGTGCTTGTTGAGATGCTCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGCTCTCGGGCATGCACGCCCTGGTGCTTGTTGAGATGCTCTCG  450

seq1  CTGCTTGAAGGCTTTATCGCAGCTAGGGCACTTGTAGGGCTTCTCGCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGAAGGCTTTATCGCAGCTAGGGCACTTGTAGGGCTTCTCGCCCG  500

seq1  TGTGCACCCGCCGGTGGCGTTGCAGGTCTGAGGCATACTTGAAGCGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCCGCCGGTGGCGTTGCAGGTCTGAGGCATACTTGAAGCGCTTC  550

seq1  TCGCAGTCCGGACACTTGAGCGGCTTCTCCCGGGCCGGGTCACAGCGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGTCCGGACACTTGAGCGGCTTCTCCCGGGCCGGGTCACAGCGGTG  600

seq1  CTGCACGAACTCCGAGGAAGAAAAAAAGCGGCGCTCGCACAGGGTGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACGAACTCCGAGGAAGAAAAAAAGCGGCGCTCGCACAGGGTGCACC  650

seq1  GCAGAGGCTTCTCGGCGGCAGCGCAGTGGGACAGCTGGTGCTTCTGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCTTCTCGGCGGCAGCGCAGTGGGACAGCTGGTGCTTCTGCAGA  700

seq1  GCGGATGCCCGCTTGTAGGCCTTGTTACACACGGGGCACTTG-AAGGGCC  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCGGATGCCCGCTTGTAGGCCTTGTTACACACGGGGCACTTGAAAGGGCC  750

seq1  GCTCGGTGGAGGTTGGCAGGCACTTGTGCCGCAGCAGCTCGGCCGACTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTGGAGGTTGGCAGGCACTTGTGCCGCAGCAGCTCGGCCGACTGG  800

seq1  TCGAAGCCCTTCTGGCACACCGGGCACTTGAACAGAGTCTCCAGGGTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGCCCTTCTGGCACACCGGGCACTTGAACAGAGTCTCCAGGGTGTG  850

seq1  CACGTGCTGGTGGTAGAGCAGGTGGCTGGGCTGGCCGAAGCCC-TTCTCG  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACGTGCTGGTGGTAGAGCAGGTGGCTGGGCTGGCCGAAGCCCTTTCTCG  900

seq1  CACAGGCCGCACTTAAAGGGTTCTTCCGTCTTGTGTGTGCGCCGGTGGCG  948
      ||||||||||| |||||||| |||||||||||||||||||| ||||||||
seq2  CACAGGCCGCA-TTAAAGGG-TCTTCCGTCTTGTGTGTGCG-CGGTGGCG  947

seq1  CATCAGTGCGTACTGC-TGTTTGAAGCCCATGGGGCACAGATCACACTTG  997
      || ||||||||||||| ||| ||||| |||||||||||||||||||| ||
seq2  CA-CAGTGCGTACTGCTTGTATGAAG-CCATGGGGCACAGATCACAC-TG  994

seq1  AAGGGCCTCTCCGCACTGTGCGTGCGCTCATGCTGCCGCAGGTCCGACGG  1047
      ||||| |||| | ||||||||||||||||||||||||| |||||| ||||
seq2  AAGGG-CTCT-CTCACTGTGCGTGCGCTCATGCTGCCG-AGGTCCTACGG  1041

seq1  CCGCTTGAAGGCCTTCTGGCA-CTCGCCGCAGCGGAAGGGCCGCTCGCCG  1096
       ||| |||||| ||||||| | |||| |||| || |  || ||||| |||
seq2  -CGC-TGAAGG-CTTCTGGGATCTCG-CGCAACGTA--GGGCGCTC-CCG  1084

seq1  CTCGGGGTACAGGGG  1111
      ||||||||| |||||
seq2  CTCGGGGTA-AGGGG  1098