BAC Information

Click to search

BAC

Clone NameB6Ng01-170P14
Chromosome8 (Build37)
Map Location 58,403,631 - 58,574,331
singlet/doubletdoublet
Overlap geneGlra3, LOC664812
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29
Downstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P14.bB6Ng01-170P14.g
ACCDH961555DH961556
length1,0881,089
definitionDH961555|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P14, 5' end.DH961556|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,403,631 - 58,404,733)(58,573,239 - 58,574,331)
sequence
gaattcaacaaccatggcaatttaaaaacacacaaagactcacacaaaca
cagatgtacacatactcatagaagagtaaaaaagaaaatatctaaaaata
ccaaccttcttatttgattttactttcacaaacactcttgaactatttgt
gattgaatctcctctcaaaggtcactatttaatgttaaatctgattttaa
atgtactcctataattttagttaaagcttctttaaggttttgtcagcctc
tgagtattctgagggtaaatatcagcttgaacacagtggtaggtccatgg
tatgtgagcagatgaaagaattaagattctgtgtttaggattctaagctt
gaaaagtgaatatacaaaacaaaaactgtagcaacacttatctgtagatt
gaaatgatgaatcacgcaaacaactttaaggttattgtgaaacaaagtat
cttctccatgctgtcaattagaaaaagaaatataataatcttttgcactg
ttattcaccaagggatctaccatgatttcaagagaaaaataaaacacaca
aacatccaagactgattttcctagtacttgtaaaagtatgtttttaagga
gaaacctttggcttgcaaggatgttcaatagattgaagaaaaatgagtat
actggtagccctttgcatagctgatgggagatgttgccagcatccagtta
gcacaattgctttaaatttcacattatgatgaaaaatacttaagaaatta
aatgggtatttggatatgcattttatataggatgtcttagtttgagtttc
attgctgtgaagggacaatatgaccaaggtaactcttacaaaggaaatca
tttaattggggatggcttacagtttcagagtttcatccattatcatcatg
gtaggaagcatgtcggtgtcccagcagacatggtaccagaaggtcaaaat
tctacatcttgagtcaaaggcagctagagagactcactgcactgagcaga
gctgaccatagacttcaattctattccccagacatgcactactccaatag
cacactttctataggtccataacctcatagcagcatat
gaattctctcttatccttaaaaatgtatacatatgtgtatatgcacgtat
gcatgtaatagtaatccatagaagaagtccacgaatttgaaagagagtag
ggagcagggttgtattgatgggtttgcagggaaaaaagggaagtgggaaa
ggctgtattttataatctcaaaaatacaaataaataaattgaaagacagg
tctgtctatatgtcaaatagagagaaaatgtttattaattttatttttag
gtgtattacaatttatgaggcctagtaaatgtagcaagataaaaggacaa
ccacgaatacccaccaattcatcttattataggacctatctaaattgtag
acattatattcataagatatttttatagtagtaataaaactttttacctt
agtatgcattgtataatatgcatttaatgagaaagtttggggtaaatctt
gctttcattttctgtgtttttctttactctcttttcccaaaataagcatc
tatggaacattaatattattaaagtaaaaaattaaataattaattaagta
tactggtctcattcaattgaaaattcaatttagaagattatatcataata
ataaagccaaaatgaactcatgtatgtcatattttttccaaacttgattg
aagaaatatcaattaactatatgttgagtttaaattgtaaggagaaatcc
ctgctagattagctttccagtgttaaaagaataagaaaccctgaatattg
tttgctcctctcattttatagctacatgtcaggaacataacatgaatgtc
cttagttccataggtctccagagaaaccaggaatgctaagcacaggggat
tgtctttcaatggacagatgagaaagctgagcattggagatgattaacag
ctctggtgaactgtgtcatctgctgggctaggccatatcagttcctatac
caggaccaaagtggcttgactcatagccaaatgacagtgtgtatctacat
gatcaagtcagaaccagaagcctgaagtccttaaggctagtataggtagt
ctatctgtaaaatctatttctctagaaaaaaaatgacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_58403631_58404733
seq2: B6Ng01-170P14.b_45_1132

seq1  GAATTCAACAACCATGGCAATTTAAAAACACACAAAGACTCACACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAACCATGGCAATTTAAAAACACACAAAGACTCACACAAACA  50

seq1  CAGATGTACACATACTCATAGAAGAGTAAAAAAGAAAATATCTAAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTACACATACTCATAGAAGAGTAAAAAAGAAAATATCTAAAAATA  100

seq1  CCAACCTTCTTATTTGATTTTACTTTCACAAACACTCTTGAACTATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTCTTATTTGATTTTACTTTCACAAACACTCTTGAACTATTTGT  150

seq1  GATTGAATCTCCTCTCAAAGGTCACTATTTAATGTTAAATCTGATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATCTCCTCTCAAAGGTCACTATTTAATGTTAAATCTGATTTTAA  200

seq1  ATGTACTCCTATAATTTTAGTTAAAGCTTCTTTAAGGTTTTGTCAGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCCTATAATTTTAGTTAAAGCTTCTTTAAGGTTTTGTCAGCCTC  250

seq1  TGAGTATTCTGAGGGTAAATATCAGCTTGAACACAGTGGTAGGTCCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTCTGAGGGTAAATATCAGCTTGAACACAGTGGTAGGTCCATGG  300

seq1  TATGTGAGCAGATGAAAGAATTAAGATTCTGTGTTTAGGATTCTAAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGCAGATGAAAGAATTAAGATTCTGTGTTTAGGATTCTAAGCTT  350

seq1  GAAAAGTGAATATACAAAACAAAAACTGTAGCAACACTTATCTGTAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGAATATACAAAACAAAAACTGTAGCAACACTTATCTGTAGATT  400

seq1  GAAATGATGAATCACGCAAACAACTTTAAGGTTATTGTGAAACAAAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATGAATCACGCAAACAACTTTAAGGTTATTGTGAAACAAAGTAT  450

seq1  CTTCTCCATGCTGTCAATTAGAAAAAGAAATATAATAATCTTTTGCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATGCTGTCAATTAGAAAAAGAAATATAATAATCTTTTGCACTG  500

seq1  TTATTCACCAAGGGATCTACCATGATTTCAAGAGAAAAATAAAACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACCAAGGGATCTACCATGATTTCAAGAGAAAAATAAAACACACA  550

seq1  AACATCCAAGACTGATTTTCCTAGTACTTGTAAAAGTATGTTTTTAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAAGACTGATTTTCCTAGTACTTGTAAAAGTATGTTTTTAAGGA  600

seq1  GAAACCTTTGGCTTGCAAGGATGTTCAATAGATTGAAGAAAAATGAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTTGGCTTGCAAGGATGTTCAATAGATTGAAGAAAAATGAGTAT  650

seq1  ACTGGTAGCCCTTTGCATAGCTGATGGGAGATGTTGCCAGCATCCAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGCCCTTTGCATAGCTGATGGGAGATGTTGCCAGCATCCAGTTA  700

seq1  GCACAATTGCTTTAAATTTCACATTATGATGAAAAATACTTAAGAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATTGCTTTAAATTTCACATTATGATGAAAAATACTTAAGAAATTA  750

seq1  AATGGGTATTTGGATATGCATTTTATATAGGATGTCTTAGTTTGAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTATTTGGATATGCATTTTATATAGGATGTCTTAGTTTGAGTTTC  800

seq1  ATTGCTGTGAAGGGACAATATGACCAAGGTAACTCTTACAAAGGAAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTGAAGGGACAATATGACCAAGGTAACTCTTACAAAGGAAATCA  850

seq1  TTTAATTGGGGATGGCTTACAGTTTCAGAGTTTCATCCATTATCATCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGGGGATGGCTTACAGTTTCAGAGTTTCATCCATTATCATCATG  900

seq1  GTAGGAAGCATGGCGGTGTCCCAGCAGACATGGTACCAGAAGGGTCAAAA  950
      |||||||||||| |||||||||||||||||||||||||||| |||| |||
seq2  GTAGGAAGCATGTCGGTGTCCCAGCAGACATGGTACCAGAA-GGTC-AAA  948

seq1  ATTCTACATCTTGAGTCAAAGGCAGCTAGGAGAAGACTCACCTGCACTGA  1000
      |||||||||||||||||||||||||||| ||| ||||||| |||||||||
seq2  ATTCTACATCTTGAGTCAAAGGCAGCTA-GAG-AGACTCA-CTGCACTGA  995

seq1  GCAGAGCTTGACCATAGGACTTCAAATTCTATCCCACAGACATGCACTTA  1050
      ||||||| |||||||| |||||| |||||||| || ||||||||||| ||
seq2  GCAGAGC-TGACCATA-GACTTC-AATTCTATTCCCCAGACATGCAC-TA  1041

seq1  CTCCAATAAGGCCACACTTCCTAATAGTTCCATAA-CTCATAGGCCAAGC  1099
      ||||||||    ||||||| || |||| ||||||| |||||||    |||
seq2  CTCCAATA---GCACACTTTCT-ATAGGTCCATAACCTCATAG---CAGC  1084

seq1  ATAT  1103
      ||||
seq2  ATAT  1088

seq1: chr8_58573239_58574331
seq2: B6Ng01-170P14.g_68_1156 (reverse)

seq1  ATGTCA-TTTTTTTCTAAGAAAATAGATTCTACAGATAGGCTACCTATAC  49
      |||||| ||||||||||   ||||||||| ||||||||| ||||||||||
seq2  ATGTCATTTTTTTTCTAGAGAAATAGATTTTACAGATAGACTACCTATAC  50

seq1  TAG-CTTAAGGGCCTCAGGC-TCTGGTCTGGTCTTGATCATGTAGATAGC  97
      ||| ||||||| | |||||| ||||||   | |||||||||||||||| |
seq2  TAGCCTTAAGGACTTCAGGCTTCTGGTTCTGACTTGATCATGTAGATA-C  99

seq1  ACACATGTCATTTTGGCTATGAGTCAAGCCACCTTTGGTCCTGGTTATAG  147
      |||| ||||| |||||||||||||||||||| |||||||||||| |||||
seq2  ACAC-TGTCA-TTTGGCTATGAGTCAAGCCA-CTTTGGTCCTGG-TATAG  145

seq1  GAACTTGATATGGCCTAGCCCAGCAGATGACACAGTTCACCAG-GCTGTT  196
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAC-TGATATGGCCTAGCCCAGCAGATGACACAGTTCACCAGAGCTGTT  194

seq1  AATCATCTCCAATGCTCAGCTTTCTCATCTGTCCCATTGGAAAGACAATC  246
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  AATCATCTCCAATGCTCAGCTTTCTCATCTGT-CCATT-GAAAGACAATC  242

seq1  CCCTGTGCTTAGCATTCCTGGTTTCTCTGGAGACCTATGGAACTAAGGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTTAGCATTCCTGGTTTCTCTGGAGACCTATGGAACTAAGGAC  292

seq1  ATTCATGTTATGTTCCTGACATGTAGCTATAAAATGAGAGGAGCAAACAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTTATGTTCCTGACATGTAGCTATAAAATGAGAGGAGCAAACAA  342

seq1  TATTCAGGGTTTCTTATTCTTTTAACACTGGAAAGCTAATCTAGCAGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGGTTTCTTATTCTTTTAACACTGGAAAGCTAATCTAGCAGGGA  392

seq1  TTTCTCCTTACAATTTAAACTCAACATATAGTTAATTGATATTTCTTCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTACAATTTAAACTCAACATATAGTTAATTGATATTTCTTCAA  442

seq1  TCAAGTTTGGAAAAAATATGACATACATGAGTTCATTTTGGCTTTATTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTGGAAAAAATATGACATACATGAGTTCATTTTGGCTTTATTAT  492

seq1  TATGATATAATCTTCTAAATTGAATTTTCAATTGAATGAGACCAGTATAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATAATCTTCTAAATTGAATTTTCAATTGAATGAGACCAGTATAC  542

seq1  TTAATTAATTATTTAATTTTTTACTTTAATAATATTAATGTTCCATAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTATTTAATTTTTTACTTTAATAATATTAATGTTCCATAGAT  592

seq1  GCTTATTTTGGGAAAAGAGAGTAAAGAAAAACACAGAAAATGAAAGCAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTGGGAAAAGAGAGTAAAGAAAAACACAGAAAATGAAAGCAAG  642

seq1  ATTTACCCCAAACTTTCTCATTAAATGCATATTATACAATGCATACTAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCCAAACTTTCTCATTAAATGCATATTATACAATGCATACTAAG  692

seq1  GTAAAAAGTTTTATTACTACTATAAAAATATCTTATGAATATAATGTCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGTTTTATTACTACTATAAAAATATCTTATGAATATAATGTCTA  742

seq1  CAATTTAGATAGGTCCTATAATAAGATGAATTGGTGGGTATTCGTGGTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGATAGGTCCTATAATAAGATGAATTGGTGGGTATTCGTGGTTG  792

seq1  TCCTTTTATCTTGCTACATTTACTAGGCCTCATAAATTGTAATACACCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTATCTTGCTACATTTACTAGGCCTCATAAATTGTAATACACCTA  842

seq1  AAAATAAAATTAATAAACATTTTCTCTCTATTTGACATATAGACAGACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATTAATAAACATTTTCTCTCTATTTGACATATAGACAGACCT  892

seq1  GTCTTTCAATTTATTTATTTGTATTTTTGAGATTATAAAATACAGCCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAATTTATTTATTTGTATTTTTGAGATTATAAAATACAGCCTTT  942

seq1  CCCACTTCCCTTTTTTCCCTGCAAACCCATCAATACAACCCTGCTCCCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCCCTTTTTTCCCTGCAAACCCATCAATACAACCCTGCTCCCTA  992

seq1  CTCTCTTTCAAATTCGTGGACTTCTTCTATGGATTACTATTACATGCATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCAAATTCGTGGACTTCTTCTATGGATTACTATTACATGCATA  1042

seq1  CGTGCATATACACATATGTATACATTTTTAAGGATAAGAGAGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATATACACATATGTATACATTTTTAAGGATAAGAGAGAATTC  1089