BAC Information

Click to search

BAC

Clone NameB6Ng01-171P20
Chromosome8 (Build37)X (Build37)
Map Location 110,104,556 - 110,104,820126,050,077 - 126,050,956
singlet/doubletsingletsinglet
Overlap genePsmd7
Upstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812
Downstream geneLOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171P20.bB6Ng01-171P20.g
ACCGA000727GA000728
length877892
definitionB6Ng01-171P20.b B6Ng01-171P20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,104,556 - 110,104,820)(126,050,077 - 126,050,956)
sequence
gaattcttagggtcacttatatatactatcttattatctgcaaatagtga
tattttgacttcttcctttccaatttggtccccttgacctctttttgttg
tctaattgatccagctaggttttcaagtaccatattaaattggtagggag
aaagtgggcagccttgcctaattcttgattttagtgggattgcttccagc
ttctctccatttggtttgatgttggctactggtttgctgtttattgcttt
tattatgtttaggaatgggccttgatttcctgatctttccaagactttta
tcatgaatgtgtgttaaattttgtcaaatgctttcacaccatctaaccag
atgatcctgtggtttttgtctttgagtttgttttatagtggattacgtta
agggatttccatgtagtaaaccatccctgcattcctgggatgaagcctac
ttgatcatgatgcatgattgctttgatgtgttcttggattctgttatcga
taactttattgaggatttttgattgatattcatacagataattgggatga
agttctatatcattgttggcccttttgtgataaaaggatcagagcccatg
gctctgctgttcatctcatgaattcggacaccttgagtcaccacaccccc
aactcatgataatgaaactgtatcttagggctgatatccgtcccttgtcc
actcatctccacaatgccacagcaagggtgaccaggtagagcgcttgtcc
acaagcactgaatgtgacaaggaccctcctagtggcacacggagttatgg
tttatagatttaatttactaattaaaaagctacaccatttacttttttct
cccttttctcttctttcttcgctgcgg
gaattcttggaaaagaacaggtcaggaggtagaaagatgtggaagaatta
acggaaagaaaagagcagatgtagtaaaattgattatatgagaataagga
gtttatgggagttaaaagacttcagagaaatattaactttttaactttta
agttttttccactcatcagtggcccgagcttcgctatggctccctttctg
aataaaaacaagggtctacaattttcaaacccaagaaaatgggctaaacc
gaaccactttctgaggatagtaccactggcgtgaagttgatgatgatctt
accagattgccggatggatgacttaagagatgtcttcctaaagcagttct
atagtcatcccaatctcttgggtatttctacctttcctatttaccaaaag
ctcatataattttataattctgcacctctattctggtgatggaaaaagta
gaaaataaacgtctaagtaggacatgttaagtcatttataaatgaattgc
ttcattcagtctgtcctctgttcccaagagtaattatgaattgcttgaat
aaagtgatagtcatcagtcttatggagattaatatgagcaaaagtagcac
ttcccctctagtgtggttattatctgcagtcagttgcttccacatctatt
ttttattatgaagagaagagacaacacaaaatcagtcatcttagaaggtt
taagagcaagctagtctttatatatatagatagatatcaaacagcagctc
ttctttccatgctgaaaaaactaatataacatcagaagtgatcttctcat
tctacttttatggaagtactgcaattttaagtactatagtaatcactttt
gatttgagtggaagactttcattattgggaattttaaattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110104556_110104820
seq2: B6Ng01-171P20.b_644_905

seq1  CTCATGAAGTCGGACACC-TGAGCCACCACACCCCCAACTCATGCAACTG  49
      |||||||| ||||||||| |||| ||||||||||||||||||||  | ||
seq2  CTCATGAATTCGGACACCTTGAGTCACCACACCCCCAACTCATGATAATG  50

seq1  AAGCTGTATCGTAGGGCTGAGATCCGTCCTTTTGTCCACTCATCTCCACA  99
      || ||||||| ||||||||| ||||||||  |||||||||||||||||||
seq2  AAACTGTATCTTAGGGCTGATATCCGTCC-CTTGTCCACTCATCTCCACA  99

seq1  ATGCCACAGCAAGGGTGACCAGGGCAGAGCGCTTGTCCACAAGCACTGAA  149
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  ATGCCACAGCAAGGGTGACCA-GGTAGAGCGCTTGTCCACAAGCACTGAA  148

seq1  TGTGACAAAGGACCCTCCTAGTGGCACACGGAGTTATGGTTATAAGATTT  199
      |||||| ||||||||||||||||||||||||||||||||||   ||| ||
seq2  TGTGAC-AAGGACCCTCCTAGTGGCACACGGAGTTATGGTTTATAGA-TT  196

seq1  TAATTTACTAATTAAAAAAGCTACACCATTTAC-TTTTTCTCCTTTTTCT  248
      ||||||||||||| ||||||||||||||||||| ||||||||| ||||||
seq2  TAATTTACTAATT-AAAAAGCTACACCATTTACTTTTTTCTCCCTTTTCT  245

seq1  CTTCTTTCTTCGCTGCG  265
      |||||||||||||||||
seq2  CTTCTTTCTTCGCTGCG  262

seq1: chrX_126050077_126050956
seq2: B6Ng01-171P20.g_75_956

seq1  AAAAGAACAGGCAAGGAGGTAGAAAGATGTGGAAGAATTAAGGGAAAGAA  50
      |||||||||||  |||||||||||||||||||||||||||| ||||||||
seq2  AAAAGAACAGGTCAGGAGGTAGAAAGATGTGGAAGAATTAACGGAAAGAA  50

seq1  AAGAAGAGATGTAGTAAAATTGATTATATGAGAATAAGGAGTTTATAGGA  100
      ||||  |||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGAGCAGATGTAGTAAAATTGATTATATGAGAATAAGGAGTTTATGGGA  100

seq1  GTTAAAAGACTTCAGAGAAATATTAACTTTTTAACTTTTAAGTTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGACTTCAGAGAAATATTAACTTTTTAACTTTTAAGTTTTTTCC  150

seq1  ACTCATCAGTGTCCCTAGCTTCTCTATGGCTCCCTTTCTGAATAAGAACA  200
      ||||||||||| ||| |||||| |||||||||||||||||||||| ||||
seq2  ACTCATCAGTGGCCCGAGCTTCGCTATGGCTCCCTTTCTGAATAAAAACA  200

seq1  GGTGTCTACAATTTTCAAACCCAAGAAAATAGGCTAAACCGAACCACTTT  250
       | ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGTCTACAATTTTCAAACCCAAGAAAATGGGCTAAACCGAACCACTTT  250

seq1  CTGAGGATAGTACCACTGGCATGAAGTTGATAATGATCTTACCAGATTAC  300
      |||||||||||||||||||| |||||||||| |||||||||||||||| |
seq2  CTGAGGATAGTACCACTGGCGTGAAGTTGATGATGATCTTACCAGATTGC  300

seq1  AGCATGTATGACTTAATAGATGTCTTCCTAAAGCAGTTCTATAGTCATCC  350
       | ||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  CGGATGGATGACTTAAGAGATGTCTTCCTAAAGCAGTTCTATAGTCATCC  350

seq1  CAATCTCTTGGGTATTTCTACCTTTCCTATTTACCAAAAGCTCATATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTTGGGTATTTCTACCTTTCCTATTTACCAAAAGCTCATATAAT  400

seq1  TTTATAATTCTGCACCTCTATTCTGGTGATGGAAAAAGTAGAAAATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTCTGCACCTCTATTCTGGTGATGGAAAAAGTAGAAAATAAAC  450

seq1  GTCTAAGTAGGACATGTTAAGTCATTTATAAATGAATTGCTTCATTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGTAGGACATGTTAAGTCATTTATAAATGAATTGCTTCATTCAGT  500

seq1  CTGTCCTCTGTTCCCAAGAGTAATTATGAATTGCTTGAATAAAGTGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTGTTCCCAAGAGTAATTATGAATTGCTTGAATAAAGTGATAG  550

seq1  TCATCAGTCTTATGGAGATTAATATGAGCAAAAGTAGCACTTCCCCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTCTTATGGAGATTAATATGAGCAAAAGTAGCACTTCCCCTCTA  600

seq1  GTGTGGTTATTATCTGCAGTCAGTTGCTTCCACATCTATTTTTTATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTATTATCTGCAGTCAGTTGCTTCCACATCTATTTTTTATTATG  650

seq1  AAGAGAAGAGACAACACAAAATCAGTCATCTTAGAAGGTTTAAGAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGACAACACAAAATCAGTCATCTTAGAAGGTTTAAGAGCAAG  700

seq1  CTAGTCTTTATATATATAGATAGATATCAAACAGCAGCTCTTCTTTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTTTATATATATAGATAGATATCAAACAGCAGCTCTTCTTTCCAT  750

seq1  GCTGAAAAAACTAATATAACATCAGAAGTGATCTTCTCATTCTACTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAAAACTAATATAACATCAGAAGTGATCTTCTCATTCTACTTTTA  800

seq1  TTGTAGTACTGCAATTTTAAGTTACTAATAGTAATCACTTTTGATTTGAG  850
      | | ||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TGGAAGTACTGCAATTTTAAG-TACT-ATAGTAATCACTTTTGATTTGAG  848

seq1  T-GAAGAC-TTCATTATTGTGA--TTTTAATTGC  880
      | |||||| |||||||||| ||  ||| ||||||
seq2  TGGAAGACTTTCATTATTGGGAATTTTAAATTGC  882