BAC Information

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BAC

Clone NameB6Ng01-172P20
Chromosome8 (Build37)
Map Location 32,963,681 - 33,180,906
singlet/doubletdoublet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P20.bB6Ng01-172P20.g
ACCGA001459GA001460
length1,086879
definitionB6Ng01-172P20.b B6Ng01-172P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,963,681 - 32,964,750)(33,180,033 - 33,180,906)
sequence
gaattcatatcccattaattggtttatataattaaactgatgaatgagtt
aagagaaaattttgagtctcttaaatatgattataccctatattcagtat
ccacacaattctatcatgtttctgacaaaagttccacatcataaaaacta
aacacacttacactatcacaaatgagtataaccatttaaatactgtattt
tactttattttaagacagggtctcactacactgcccaggctgaccgagaa
tacaagatcctcctgcctcagcctacggagtagctgggtttgtaggtaag
tgtcatagccttaatttttacaatagtataatgtctctatgctatgaaac
acaaaccaaatttcacttgtacactaaatcctgaacattccactgctgcc
tacttttataaagacactggatcaaaatctgaataacaactcagttgttt
tctactcattgctaaggatttcgtcatggaagcacagctatttttttctg
gagagtagcacaagttaaaaaaaacaaaaaacaaaaaaatagcaacactg
gacagatgtttcccctctccctggttataaacatggttaggacagcaggc
agagaccacccccagactggaatcaggacacaaatgcacacctttgctaa
gaccccaggccagtttccgtagacaacaagcaggaatgagtcacattgga
tacctgagagccatccggagactccatccttcctgagtgactgtgtgctc
aagatactttttactgattgacttttggaaaatcagataaatatgaggtt
ttctcaatgaactatatatactttaaaaaacacacaaaaacaaaaaaaac
ccatcttaacattcctatataaagcagccaaacaataaaaatgaaagtct
ttaaccttacctgcatcttgaatgcttatgtattttagaaatcttgcaag
ggtttcttgttccttccatagcctgcatttgtttggttctgtttgtttgt
tttttaagccaaaccccctccaaattattaatcctctaccccagaaatgc
aataagcctcctggggtgggaagcaaacttgcactg
gaattctctctgccaattgatttgaatctactttaagtttaaacacatta
ctggatgactaagccttattagtcagtaggaaaaccttactgttagtggg
attagaggtagcacaggagaagtctccattggagatttctgtctatcaat
aaatcaagggtaagtggaaaagaagaagaagaagaaggagaaggagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaaggagcaagaacctgaagaaaaagg
aacactcaagggttggttctgagagactttagggtcacaatgaaagagac
aagagattcttcacagaccttctctggagatactgtctcccggctttgct
acacagagatataagtgtcatctactcatggtgaatgttagcaccaaaaa
gacctaatttatttttctgctttatgcaatcatagggattaaaggtgtaa
ctggtaatatagttataaaaaattcattaccataagtcattcactaattt
tttaaaaatagataatgtagttttgtatttatacacacacgtgtgagcct
gcatgagtatatttgcaatatgtgtgggcaggagtccagaagagggtgtc
ggaccttctgcaactggaagtacaggtgttttgcaagatgtcatggaagt
gctaggaacaggacctaggtactctgtatggacagtgagtaatttttgcc
actgagtcacctctccagtgccagatttattaatttttttctttacctta
cgtaatactgaggcagccaagatgagtgtgggagaaagtggggtattgat
ctttcatggataggctccaccacactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_32963681_32964750
seq2: B6Ng01-172P20.b_38_1123

seq1  GAATTCATATCCCATTAATTGGTTTATATAATTAAACTGATGAATGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCCCATTAATTGGTTTATATAATTAAACTGATGAATGAGTT  50

seq1  AAGAGAAAATTTTGAGTCTCTTAAATATGATTATACCCTATATTCAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAATTTTGAGTCTCTTAAATATGATTATACCCTATATTCAGTAT  100

seq1  CCACACAATTCTATCATGTTTCTGACAAAAGTTCCACATCATAAAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAATTCTATCATGTTTCTGACAAAAGTTCCACATCATAAAAACTA  150

seq1  AACACACTTACACTATCACAAATGAGTATAACCATTTAAATACTGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTTACACTATCACAAATGAGTATAACCATTTAAATACTGTATTT  200

seq1  TACTTTATTTTAAGACAGGGTCTCACTACACTGCCCAGGCTGACCGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTTTAAGACAGGGTCTCACTACACTGCCCAGGCTGACCGAGAA  250

seq1  TACAAGATCCTCCTGCCTCAGCCTACGGAGTAGCTGGGTTTGTAGGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATCCTCCTGCCTCAGCCTACGGAGTAGCTGGGTTTGTAGGTAAG  300

seq1  TGTCATAGCCTTAATTTTTACAATAGTATAATGTCTCTATGCTATGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGCCTTAATTTTTACAATAGTATAATGTCTCTATGCTATGAAAC  350

seq1  ACAAACCAAATTTCACTTGTACACTAAATCCTGAACATTCCACTGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAATTTCACTTGTACACTAAATCCTGAACATTCCACTGCTGCC  400

seq1  TACTTTTATAAAGACACTGGATCAAAATCTGAATAACAACTCAGTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATAAAGACACTGGATCAAAATCTGAATAACAACTCAGTTGTTT  450

seq1  TCTACTCATTGCTAAGGATTTCGTCATGGAAGCACAGCTATTTTTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCATTGCTAAGGATTTCGTCATGGAAGCACAGCTATTTTTTTCTG  500

seq1  GAGAGTAGCACAAGTTAAAAAAAACAAAAAACAAAAAAATAGCAACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGCACAAGTTAAAAAAAACAAAAAACAAAAAAATAGCAACACTG  550

seq1  GACAGATGTTTCCCCTCTCCCTGGTTATAAACATGGTTAGGACAGCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGTTTCCCCTCTCCCTGGTTATAAACATGGTTAGGACAGCAGGC  600

seq1  AGAGACCACCCCCAGACTGGAATCAGGACACAAATGCACACCTTTGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCACCCCCAGACTGGAATCAGGACACAAATGCACACCTTTGCTAA  650

seq1  GACCCCAGGCCAGTTTCCGTAGACAACAAGCAGGAATGAGTCACATTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGGCCAGTTTCCGTAGACAACAAGCAGGAATGAGTCACATTGGA  700

seq1  TACCTGAGAGCCATCCGGAGACTCCATCCTTCCTGAGTGACTGTGTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGAGCCATCCGGAGACTCCATCCTTCCTGAGTGACTGTGTGCTC  750

seq1  AAGATACTTTTTACTGATTGACTTTTGGAAAATCAGATAAATATGAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTTTTACTGATTGACTTTTGGAAAATCAGATAAATATGAGGTT  800

seq1  TTCTCAATGAACTATATATAC-TTAAAAAACACACAAAA--CAAAAAAAC  847
      ||||||||||||||||||||| |||||||||||||||||   ||||||||
seq2  TTCTCAATGAACTATATATACTTTAAAAAACACACAAAAACAAAAAAAAC  850

seq1  CCATCTTAACATTCCTATATAAAGCAGCCAAACAAT-AAAATGAAAGTCT  896
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCATCTTAACATTCCTATATAAAGCAGCCAAACAATAAAAATGAAAGTCT  900

seq1  TTAACCTTACCTGCATCTTGAATGCTTATGTA-TTTAGAAATC-TGCAA-  943
      |||||||||||||||||||||||||||||||| |||||||||| ||||| 
seq2  TTAACCTTACCTGCATCTTGAATGCTTATGTATTTTAGAAATCTTGCAAG  950

seq1  GGTTTCTTGTT-CTTCCATAGCCTGCATTTTGTTTG--TCTGTTTGTTTG  990
      ||||||||||| ||||||||||||||| ||||||||  ||||||||||||
seq2  GGTTTCTTGTTCCTTCCATAGCCTGCA-TTTGTTTGGTTCTGTTTGTTTG  999

seq1  -TTTTTAAGCCCAACCCCCCTCAAATTATT-ATCCTC--ACCCAG-AATG  1035
       |||||||||| |||||||  ||||||||| ||||||   ||||| ||||
seq2  TTTTTTAAGCCAAACCCCCTCCAAATTATTAATCCTCTACCCCAGAAATG  1049

seq1  CAATAGGCCTCCT-GGGTTGGAAGCACAC-TGCACTG  1070
      ||||| ||||||| |||| ||||||| || |||||||
seq2  CAATAAGCCTCCTGGGGTGGGAAGCAAACTTGCACTG  1086

seq1: chr8_33180033_33180906
seq2: B6Ng01-172P20.g_62_940 (reverse)

seq1  AAAAGTGT-GTGGTGCCTATCCATGAAAGATC-ATA-CCCACTTTCTCCC  47
      |||||||| |||| |||||||||||||||||| ||| |||||||||||||
seq2  AAAAGTGTGGTGGAGCCTATCCATGAAAGATCAATACCCCACTTTCTCCC  50

seq1  ACACTCATCTTGGCTGCCTCAGTATTACGTAA-GTAAAGAAAAAAATTAA  96
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACTCATCTTGGCTGCCTCAGTATTACGTAAGGTAAAGAAAAAAATTAA  100

seq1  TAAATCTGGCACTGGAGAGGTGACTCAGTGGCAAAAATTACTCACTGTCC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGGCACTGGAGAGGTGACTCAGTGGCAAAAATTACTCACTGTCC  150

seq1  ATACAGAGTACCTAGGTCCTGTTCCTAGCACTTCCATGACATCTTGC-AA  195
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATACAGAGTACCTAGGTCCTGTTCCTAGCACTTCCATGACATCTTGCAAA  200

seq1  ACACCTGTACTTCCAGTTGCAGAAGGTCCGACACCCTCTTCTGGACTCCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTACTTCCAGTTGCAGAAGGTCCGACACCCTCTTCTGGACTCCT  250

seq1  GCCCACACATATTGCAAATATACTCATGCAGGCTCACACGTGTGTGTATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACATATTGCAAATATACTCATGCAGGCTCACACGTGTGTGTATA  300

seq1  AATACAAAACTACATTATCTATTTTTAAAAAATTAGTGAATGACTTATGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAACTACATTATCTATTTTTAAAAAATTAGTGAATGACTTATGG  350

seq1  TAATGAATTTTTTATAACTATATTACCAGTTACACCTTTAATCCCTATGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATTTTTTATAACTATATTACCAGTTACACCTTTAATCCCTATGA  400

seq1  TTGCATAAAGCAGAAAAATAAATTAGGTCTTTTTGGTGCTAACATTCACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAAGCAGAAAAATAAATTAGGTCTTTTTGGTGCTAACATTCACC  450

seq1  ATGAGTAGATGACACTTATATCTCTGTGTAGCAAAGCCGGGAGACAGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAGATGACACTTATATCTCTGTGTAGCAAAGCCGGGAGACAGTAT  500

seq1  CTCCAGAGAAGGTCTGTGAAGAATCTCTTGTCTCTTTCATTGTGACCCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGAAGGTCTGTGAAGAATCTCTTGTCTCTTTCATTGTGACCCTA  550

seq1  AAGTCTCTCAGAACCAACCCTTGAGTGTTCCTTTTTCTTCAGGTTCTTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTCAGAACCAACCCTTGAGTGTTCCTTTTTCTTCAGGTTCTTGC  600

seq1  TCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  650

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTTCT  700

seq1  TCTTCTTCTTTTCCACTTACCCTTGATTTATTGATAGACAGAAATCTCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTTTCCACTTACCCTTGATTTATTGATAGACAGAAATCTCCA  750

seq1  ATGGAGACTTCTCCTGTGCTACCTCTAATCCCACTAACAGTAAGGTTTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACTTCTCCTGTGCTACCTCTAATCCCACTAACAGTAAGGTTTTC  800

seq1  CTACTGACTAATAAGGCTTAGTCATCCAGTAATGTGTTTAAACTTAAAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACTAATAAGGCTTAGTCATCCAGTAATGTGTTTAAACTTAAAGT  850

seq1  AGATTCAAATCAATTGGCAGAGAGAATTC  874
      |||||||||||||||||||||||||||||
seq2  AGATTCAAATCAATTGGCAGAGAGAATTC  879