BAC Information

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BAC

Clone NameB6Ng01-173L24
Chromosome8 (Build37)
Map Location 12,162,453 - 12,335,040
singlet/doubletdoublet
Overlap geneLOC100040175
Upstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
Downstream geneEG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173L24.bB6Ng01-173L24.g
ACCGA002015GA002016
length8361,129
definitionB6Ng01-173L24.b B6Ng01-173L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,334,212 - 12,335,040)(12,162,453 - 12,163,582)
sequence
gaattccagccttcaaggtaggatattacatcggctctcgtgtggtcttc
acacatttaggcttacagagcatttctaccaagtctccacacacacaatg
agtgaatccactgaacccttacttaagtctgtactccatgtgctgttaaa
ccagtgtctttccacgtgattagtgattgcatctcagtacaggactcagg
agtaggatgtgggggtggtctttccaaaacacattagttatggaccactg
acctcgaccccactgcccttggcctctggagatgaaaacggcacccgaag
ggaaactacagggtcagaactccgtgagccacaaacaaatcaaagctgtc
tctgcttgcgagtgttttcccttctactggctattctcaagacaagccta
gaagtgagcctgggctctcaagtatagttattaaatcccaccactccacg
ctatcctgtcttggagggcttttggctctgacagaccaggaaggagagag
tcgagagaggagcctttcatgggaagtggctttctagcctcagggcaaat
ttctaggaaacagagttatcccaaacaccaaaggagaagatgatggacag
actagtgtgccctctgatgagcgtcggctttcctgggaaggtgccctcac
atagccctggcagagagcagcacagccagacatgacctgtggcagaggca
ctattcccaagctgctgctttctccgaagcagcctggcagaggacccctg
gaggcagcacgtgctcttaacaggaagcagaacaggctcccaatgaattt
catgtgttatattccctgggggcttggcagattaaa
gaattcaacttttctggaaaacaacaaaaatgttcagtccatgtcagaag
ggaagggatgaagagattctcaggtggttcatgtgcactgtagtgctccc
taatgcagagaagtacccaggggctgttcctggtatggattgaggagatg
tcttctgtaacattacctgccacacagaatcctgctcacacagagacaac
cgtcaggtcgacagtctggagagggtacacagtgaagagccttgctctag
atgcaacagaagaatgaaaggcaggagagggtcttgaaccatgggcagca
agacaggaaggggctgggtgagaaggctgggcagagcctgctcagctcag
agtccccaagagttaaccttccctccctcctgacagactcacttaggaag
gaatgagttgtgtcctcactgtcttgcctcttcactgtgctgagctgact
cctcctcagccgtggatctactacaacgaggcaaaaatttgctttgactg
cagtgacttttgagctcacgtggagctgttggcggagggacagaggggca
gcctcacccggagtcaggggaggaagaaactaggttatttggcttctgcc
ttccaggcttcggtgctgggtgttgtttgcatctatctttctggctaaag
aaatcttccctaactgcaaagaggttcacactgcattgggatcctattac
cccgagtcttctaccgctcaggaattcgaatgaaattcttgactcgtaac
cagggagagaacatgaccagtttttacgaaacacccacaacaggcagtgc
gccctgtgcacggaggaactgggagctagaaggagggaagagggaacctt
tcagttggcgaaagagagggggctatccctttaattgcctctttgtaagg
attatcctctcctggccgtatcccctcccccaccctgaggtgggggggga
gccctaaacagaaagttaatcctaagtatacaattttaggctttaagtct
cataccagactttattatgctaaaagaacacatcttgtcatgccacggcc
tctagctgtatcagccagcctgtcgtaatggaccttactatgccgggcca
gattccttccggaattcctatgtaattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_12334212_12335040
seq2: B6Ng01-173L24.b_42_877 (reverse)

seq1  TTTAATCTG-CAAG-CCCCAGGGAATATTACACATG-AATTCATT-GGAG  46
      ||||||||| |||| ||||||||||||| ||||||| |||||||| ||||
seq2  TTTAATCTGCCAAGCCCCCAGGGAATATAACACATGAAATTCATTGGGAG  50

seq1  CCTGTTCTGCTTCCTGTTAAGAGCACGTGCTGCCTCCA-GGGTCCTCTGC  95
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTGTTCTGCTTCCTGTTAAGAGCACGTGCTGCCTCCAGGGGTCCTCTGC  100

seq1  CAGGCTGCTTCGGAGAAAGCAGCAGCTTGGG-ATAGTGCCTCTGCCACAG  144
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGCTGCTTCGGAGAAAGCAGCAGCTTGGGAATAGTGCCTCTGCCACAG  150

seq1  GTCATGTCTGGCTGTGCTGCTCTCTGCCA-GGCTATGTGAGGGCACCTTC  193
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCATGTCTGGCTGTGCTGCTCTCTGCCAGGGCTATGTGAGGGCACCTTC  200

seq1  CCAGGAAAGCCGACGCTCATCAGAGGGCACACTAGTCTGTCCATCATCTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGCCGACGCTCATCAGAGGGCACACTAGTCTGTCCATCATCTT  250

seq1  CTCCTTTGGTGTTTGGGATAACTCTGTTTCCTAGAAATTTGCCCTGAGGC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGGTGTTTGGGATAACTCTGTTTCCTAGAAATTTGCCCTGAGGC  300

seq1  TAGAAAGCCACTTCCCATGAAAGGCTCCTCTCTCGACTCTCTCCTTCCTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCCACTTCCCATGAAAGGCTCCTCTCTCGACTCTCTCCTTCCTG  350

seq1  GTCTGTCAGAGCCAAAAGCCCTCCAAGACAGGATAGCGTGGAGTGGTGGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAGAGCCAAAAGCCCTCCAAGACAGGATAGCGTGGAGTGGTGGG  400

seq1  ATTTAATAACTATACTTGAGAGCCCAGGCTCACTTCTAGGCTTGTCTTGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAACTATACTTGAGAGCCCAGGCTCACTTCTAGGCTTGTCTTGA  450

seq1  GAATAGCCAGTAGAAGGGAAAACACTCGCAAGCAGAGACAGCTTTGATTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCCAGTAGAAGGGAAAACACTCGCAAGCAGAGACAGCTTTGATTT  500

seq1  GTTTGTGGCTCACGGAGTTCTGACCCTGTAGTTTCCCTTCGGGTGCCGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGCTCACGGAGTTCTGACCCTGTAGTTTCCCTTCGGGTGCCGTT  550

seq1  TTCATCTCCAGAGGCCAAGGGCAGTGGGGTCGAGGTCAGTGGTCCATAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCCAGAGGCCAAGGGCAGTGGGGTCGAGGTCAGTGGTCCATAAC  600

seq1  TAATGTGTTTTGGAAAGACCACCCCCACATCCTACTCCTGAGTCCTGTAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTTTTGGAAAGACCACCCCCACATCCTACTCCTGAGTCCTGTAC  650

seq1  TGAGATGCAATCACTAATCACGTGGAAAGACACTGGTTTAACAGCACATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCAATCACTAATCACGTGGAAAGACACTGGTTTAACAGCACATG  700

seq1  GAGTACAGACTTAAGTAAGGGTTCAGTGGATTCACTCATTGTGTGTGTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGACTTAAGTAAGGGTTCAGTGGATTCACTCATTGTGTGTGTGG  750

seq1  AGACTTGGTAGAAATGCTCTGTAAGCCTAAATGTGTGAAGACCACACGAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGTAGAAATGCTCTGTAAGCCTAAATGTGTGAAGACCACACGAG  800

seq1  AGCCGATGTAATATCCTACCTTGAAGGCTGGAATTC  829
      ||||||||||||||||||||||||||||||||||||
seq2  AGCCGATGTAATATCCTACCTTGAAGGCTGGAATTC  836

seq1: chr8_12162453_12163582
seq2: B6Ng01-173L24.g_65_1193

seq1  GAATTCAACTTTTCTGGAAAACAACAAAAATGTTCAGTCCATGTCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTTCTGGAAAACAACAAAAATGTTCAGTCCATGTCAGAAG  50

seq1  GGAAGGGATGAAGAGATTCTCAGGTGGTTCATGTGCACTGTAGTGCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGATGAAGAGATTCTCAGGTGGTTCATGTGCACTGTAGTGCTCCC  100

seq1  TAATGCAGAGAAGTACCCAGGGGCTGTTCCTGGTATGGATTGAGGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGAGAAGTACCCAGGGGCTGTTCCTGGTATGGATTGAGGAGATG  150

seq1  TCTTCTGTAACATTACCTGCCACACAGAATCCTGCTCACACAGAGACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTAACATTACCTGCCACACAGAATCCTGCTCACACAGAGACAAC  200

seq1  CGTCAGGTCGACAGTCTGGAGAGGGTACACAGTGAAGAGCCTTGCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGTCGACAGTCTGGAGAGGGTACACAGTGAAGAGCCTTGCTCTAG  250

seq1  ATGCAACAGAAGAATGAAAGGCAGGAGAGGGTCTTGAACCATGGGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAGAAGAATGAAAGGCAGGAGAGGGTCTTGAACCATGGGCAGCA  300

seq1  AGACAGGAAGGGGCTGGGTGAGAAGGCTGGGCAGAGCCTGCTCAGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAGGGGCTGGGTGAGAAGGCTGGGCAGAGCCTGCTCAGCTCAG  350

seq1  AGTCCCCAAGAGTTAACCTTCCCTCCCTCCTGACAGACTCACTTAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCAAGAGTTAACCTTCCCTCCCTCCTGACAGACTCACTTAGGAAG  400

seq1  GAATGAGTTGTGTCCTCACTGTCTTGCCTCTTCACTGTGCTGAGCTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTTGTGTCCTCACTGTCTTGCCTCTTCACTGTGCTGAGCTGACT  450

seq1  CCTCCTCAGCCGTGGATCTACTACAACGAGGCAAAAATTTGCTTTGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGCCGTGGATCTACTACAACGAGGCAAAAATTTGCTTTGACTG  500

seq1  CAGTGACTTTTGAGCTCACGTGGAGCTGTTGGCGGAGGGACAGAGGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTTTTGAGCTCACGTGGAGCTGTTGGCGGAGGGACAGAGGGGCA  550

seq1  GCCTCACCCGGAGTCAGGGGAGGAAGAAACTAGGTTATTTGGCTTCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACCCGGAGTCAGGGGAGGAAGAAACTAGGTTATTTGGCTTCTGCC  600

seq1  TTCCAGGCTTCGGTGCTGGGTGTTGTTTGCATCTATCTTTCTGGCTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCTTCGGTGCTGGGTGTTGTTTGCATCTATCTTTCTGGCTAAAG  650

seq1  AAATCTTCCCTAACTGCAAAGAGGTTCACACTGCATTGGGATCCTATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCCCTAACTGCAAAGAGGTTCACACTGCATTGGGATCCTATTAC  700

seq1  CCCGAGTCTTCTACCGCTCAGGAATTCGAATGAAATTCTTGACTCGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTCTTCTACCGCTCAGGAATTCGAATGAAATTCTTGACTCGTAAC  750

seq1  CAGGGAGAGAACATGACCAGTTTTTACGAAACACCCACAACAGGCAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAGAACATGACCAGTTTTTACGAAACACCCACAACAGGCAGTGC  800

seq1  GCCCTGTGCACGGAGGAACTGGGAGCTAGAAGGA-GGAAGAGGGAACC-T  848
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GCCCTGTGCACGGAGGAACTGGGAGCTAGAAGGAGGGAAGAGGGAACCTT  850

seq1  TCAGTTGGCGAAAGAGA-GGGGCTATCCCTTTAATTGCCTCTTTGTAA-G  896
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TCAGTTGGCGAAAGAGAGGGGGCTATCCCTTTAATTGCCTCTTTGTAAGG  900

seq1  ATTAT-CTCTCCTGGCCGTATCCCCTCCCCCACCCTGAGGT--GGGGGGA  943
      ||||| |||||||||||||||||||||||||||||||||||  |||||||
seq2  ATTATCCTCTCCTGGCCGTATCCCCTCCCCCACCCTGAGGTGGGGGGGGA  950

seq1  GCCCTAAAACAGAAAGGTTAAT-CTAAGTATAC-ATTTTAGGCTTTTAAA  991
      ||||| ||||||||| |||||| |||||||||| ||||||||||||  ||
seq2  GCCCT-AAACAGAAA-GTTAATCCTAAGTATACAATTTTAGGCTTT--AA  996

seq1  GGCTCCATTACAGGACTTATTATGCTAAAAGAAACACA-CCTGGCATGCC  1040
      | || |||  |||   ||||||||||||||| |||||| | || ||||||
seq2  GTCT-CATACCAGACTTTATTATGCTAAAAG-AACACATCTTGTCATGCC  1044

seq1  ACGGCTTCTAAGTGTATCAGGCAGGCTGTCGTAATG--ACTCACTTAAAT  1088
      ||||| ||||  |||||||| ||| |||||||||||   || |||   ||
seq2  ACGGCCTCTAGCTGTATCAGCCAGCCTGTCGTAATGGACCTTACT---AT  1091

seq1  GCCGGGGCCAGAATTCCTTCCCGTGATTTCTATGTAAATTGG  1130
      ||| ||||||| ||||||| |||  ||| |||||| ||||||
seq2  GCC-GGGCCAG-ATTCCTT-CCGGAATTCCTATGT-AATTGG  1129