BAC Information

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BAC

Clone NameB6Ng01-175G16
Chromosome8 (Build37)
Map Location 29,989,846 - 29,990,959
singlet/doubletsinglet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175G16.bB6Ng01-175G16.g
ACCGA003227GA003228
length5091,127
definitionB6Ng01-175G16.b B6Ng01-175G16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctctctctctctctctctctctctctctctctctctctctctc
tctctctctctctatctgtgtgtatgtgtctctctgtttctttttttttt
ttgttgtgtgattgaaactctttatcgtagtccccccgacctctcgagag
aactatatccctccctcctttttgagcgctccgataaagcaaaatcctta
caggaacaaatggctttcatttctctcgagtgtaaaagaaagctatgttt
ttttgtgtgtatgtgtgtatgtgtgcacacacacacacactattgggggt
gtgttacctctgtatacccgttgtctctaggattggaatagatgggctgt
tttggtgtgaattgtcaactttaacatctctctctcgtgtcaaatgtaag
aatagactctcgcggatgactctatataatatgggggagtgtgtccctcc
ctctctcctaaagtacgagagaggaagtactcgagactcaatcatatttt
aggagtttc

gaattctttttgacatcccatccaggatggagaggaagagcctcaagtca
tgaattcaacatcaggatggctcagctactggtccatttcagaggttctt
caaggggtcacaaagcaaagccaacacaaatgggcttcttctgaacacgg
tgtggcctcctaatcagcatgatcaaggcagcagatcacgaatggcattg
tcacacacacacacacacacacacacacacacacaaatgtatattaattg
cttgatgactccttcaaacgtgagggcttcagttagtcagaccatcatgt
ctaagaaaatccttacaacacaatacattctttatatttcttgtgtttta
cttagcataagaagataatgctgctttaataaggtgtctttcttaaaaag
tagggcattctttatcaaatcttcagttcttttgtgaatatatatatata
tatatatatatatatatatatatatatatatacataggcaataactatgc
acatatgtggatttggaaaacatttaagcaaagcctctctatttaaggta
actgctcctatcatctccactaaagttcacccatctgtattgcaagcaga
cacagctatatacttttctatctccagagatgtcagctaacttgattgca
ggaaacgttacagtggtacaaataaaactaataaaacattgtatctcatg
aagaagagaggcattgtacccaataacttgcacaactctaataaacaggg
gaaagcccacacctttaaatgatcatgcaaattatgggcatcagcctttt
gctatggagtagggtctcacagaatataaaaatataacctacggtactga
tatgctaataagctttctaggttctgggatggtttagttgtgggatagac
taaacattgggcagcagatgaataaatcactctgcatgtttcttaagcat
tacagagcagcacagaaacttcatcattttgtcagcttttattttgtttt
aatgagaaaacgctgacagcagttactgctgtaattcccttattttatca
gatagaaacactagttacttttagcaaggttatccttgtagggaggcgaa
aagttaaggagcattttcactaattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_29989846_29990959
seq2: B6Ng01-175G16.g_64_1190

seq1  GAATTCTTTTTGACATCCCATCCAGGATGGAGAGGAAGAGCCTCAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGACATCCCATCCAGGATGGAGAGGAAGAGCCTCAAGTCA  50

seq1  TGAATTCAACATCAGGATGGCTCAGCTACTGGTCCATTTCAGAGGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAACATCAGGATGGCTCAGCTACTGGTCCATTTCAGAGGTTCTT  100

seq1  CAAGGGGTCACAAAGCAAAGCCAACACAAATGGGCTTCTTCTGAACACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGTCACAAAGCAAAGCCAACACAAATGGGCTTCTTCTGAACACGG  150

seq1  TGTGGCCTCCTAATCAGCATGATCAAGGCAGCAGATCACGAATGGCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCCTAATCAGCATGATCAAGGCAGCAGATCACGAATGGCATTG  200

seq1  TCACACACACACACACACACACACACACACACACAAATGTATATTAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACAAATGTATATTAATTG  250

seq1  CTTGATGACTCCTTCAAACGTGAGGGCTTCAGTTAGTCAGACCATCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGACTCCTTCAAACGTGAGGGCTTCAGTTAGTCAGACCATCATGT  300

seq1  CTAAGAAAATCCTTACAACACAATACATTCTTTATATTTCTTGTGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAATCCTTACAACACAATACATTCTTTATATTTCTTGTGTTTTA  350

seq1  CTTAGCATAAGAAGATAATGCTGCTTTAATAAGGTGTCTTTCTTAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATAAGAAGATAATGCTGCTTTAATAAGGTGTCTTTCTTAAAAAG  400

seq1  TAGGGCATTCTTTATCAAATCTTCAGTTCTTTTGTGA--ATATATATATA  448
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TAGGGCATTCTTTATCAAATCTTCAGTTCTTTTGTGAATATATATATATA  450

seq1  TATATATATATATATATATATATATATATATACATAGGCAATAACTATGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATACATAGGCAATAACTATGC  500

seq1  ACATATGTGGATTTGGAAAACATTTAAGCAAAGCCTCTCTATTTAAGGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGGATTTGGAAAACATTTAAGCAAAGCCTCTCTATTTAAGGTA  550

seq1  ACTGCTCCTATCATCTCCACTAAAGTTCACCCATCTGTATTGCAAGCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCTATCATCTCCACTAAAGTTCACCCATCTGTATTGCAAGCAGA  600

seq1  CACAGCTATATACTTTTCTATCTCCAGAGATGTCAGCTAACTTGATTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTATATACTTTTCTATCTCCAGAGATGTCAGCTAACTTGATTGCA  650

seq1  GGAAACGTTACAGTGGTACAAATAAAACTAATAAAACATTGTATCTCATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGTTACAGTGGTACAAATAAAACTAATAAAACATTGTATCTCATG  700

seq1  AAGAAGAGAGGCATTGTACCCAATAACTTGCACAACTCTAATAAACAGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGAGGCATTGTACCCAATAACTTGCACAACTCTAATAAACAGGG  750

seq1  GAAAGCCCACACCTTTAAATGATCATGCAAATTATGGGCATCAGCC-TTT  797
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAGCCCACACCTTTAAATGATCATGCAAATTATGGGCATCAGCCTTTT  800

seq1  GCTATGGAGTAGGGTCTCACAGAATATAAAAATATAA-CTACGGTACTGA  846
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTATGGAGTAGGGTCTCACAGAATATAAAAATATAACCTACGGTACTGA  850

seq1  TATGCTAATAAGCTTTCTAGGTTCTGGGATGGTTTAGTTGT-GGATAGAC  895
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATGCTAATAAGCTTTCTAGGTTCTGGGATGGTTTAGTTGTGGGATAGAC  900

seq1  T-AACATT-GGCAGCAGATGAAT-AATCACTCTGCATGTT--CTAAGCAT  940
      | |||||| |||||||||||||| ||||||||||||||||   |||||||
seq2  TAAACATTGGGCAGCAGATGAATAAATCACTCTGCATGTTTCTTAAGCAT  950

seq1  AACAGAGCAGCACAG-AACTTCATCA-TTTGTCAGCTTT--ATTTGTTTA  986
       |||||||||||||| |||||||||| ||||||||||||   ||||||| 
seq2  TACAGAGCAGCACAGAAACTTCATCATTTTGTCAGCTTTTATTTTGTTTT  1000

seq1  AATGAGAAAAACGCTGACAGCAGTTACTGCTGTAATCCCCTTA-TTTATC  1035
      |||||| ||||||||||||||||||||||||||||| |||||| ||||||
seq2  AATGAG-AAAACGCTGACAGCAGTTACTGCTGTAATTCCCTTATTTTATC  1049

seq1  AGATAGAAAACACTAGTTACTTTTAGCAGGTTTAATCCTGTAGGGAGGCG  1085
      |||||| ||||||||||||||||||||| | |||  | ||||||||||||
seq2  AGATAG-AAACACTAGTTACTTTTAGCAAGGTTATCCTTGTAGGGAGGCG  1098

seq1  AAAAGTTA--GAGCATTTTCCAACTAATTGA  1114
      ||||||||  ||||||||||  |||||||||
seq2  AAAAGTTAAGGAGCATTTTC--ACTAATTGA  1127


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