BAC Information

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BAC

Clone NameB6Ng01-176F09
Chromosome8 (Build37)
Map Location 52,932,616 - 53,064,147
singlet/doubletdoublet
Overlap geneLOC623872
Upstream geneLOC667517
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F09.bB6Ng01-176F09.g
ACCGA003895GA003896
length1,1601,045
definitionB6Ng01-176F09.b B6Ng01-176F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,062,997 - 53,064,147)(52,932,616 - 52,933,675)
sequence
gaattcccttgaggttatttagcactctctgtgtagtcatacataaagaa
cactttaaactgatatgagggaggcagatatttttagatatattcttagc
aaaagtaaggaaagaagtattgtgaatattcatagtgttacattaacaca
tacaataattttcatctccataaataagtgtgatgttcactttcgctcaa
gcatagttaatattttatgaagtgtttggatgcactgtggggttaccaac
actctgtttaatgtaacatttttctttgaaggactgaaaacaagtggtct
ctccagggcatcataaatcttagttttcatttagaatatcacaaccataa
agaacataaaacaatatttaagcctcagagaagaccaattttcaatacaa
aaatgggattgttatgacagtaaaggaatgagcagatgagaataggaaca
ctccaatttacacagggctgccaaagacaaaataaaggaggcacaggagc
cccagggattgaatatgatagaacagtgaccagaaagctgaaatggccca
tgtggactgtatattttttagccatctgtaacagagagtgtagaatcagc
attcatacaatgtgactaaagacagatgtttaaatgattttaaatgagac
attgggaaatcatatgaattgagttaaaaagtcatcattttatataaatg
tgcaataaaatcatataatgtgacaaaactttaaggtaaaataattgcct
ggaatttagccagaatgcatttaaaagtccccaattatagtcaatatctt
ttaacttggaagctactaaagcatgtcacgaatttaatgagatatccaaa
tttgtatccagctatagcttgatttttttcctttgatatcatactgaatc
aaaatgtaagaagacacattgctgacagtttactacccaatactgcaaaa
ttattgttatttctgtatttcctctcacatttacagagtatagatggatc
taactaaaaaaaaaaaaaaaatcaaagaaaatctccatgaatattttgtt
taaaccaggaacagtcccttgaaaatctttactcggcagaccaatgtgtg
tagatggttttcaattgcttaaataaaatgaggaaaaatacctgggaggg
gatgatttgc
gaattcactcggacaaccggatccttctacagcaaagctttattgcttca
tcataaggaagaccccgaacccggaaaatggagctgcttaaattcccctc
cttgtgacttgtcagctcctgattagctgctcactcatcaccccactact
acaccccgagatgggcagagacttggcacgaatttactccagcacctgcg
cacattgctcgtttactaattaggcactgcggaagccagcaccatcttgt
aatggcgattggtcacggctttccacaatcacataaaatcatggcgattt
gacagtacattactaaatattaaactgattaaagaaaaatcaaaaaagaa
atgaaatcattcaaatgaaaacaaacaaagcaaaagaacccaaaaacaaa
aacaaaaacaaaaacaaaaacctctaggcacattaaaatagattcctgag
aggaaactttatagctctcagcacctatatgatttcagttaaacaaaata
ataatttttctaagatatttcatacatccataacataatttttttgtctt
cttctacactgtctatattaatcgttgttctagatttgatctaatcttat
ttgtgttattttggtctccaaattattctggaatgcacatgtctgcatgt
aagaggctgagggacccagccccaattgatattgattgataaataatgtt
gcctgagatccatgattggacagggagataggagtggaacttttaggatt
ccaaagtaagggtccaggagagagagggaaagaaagtgccaccgtgctgg
aaaagaagtagctgccatgactgaaaatgaagggcagagaaatggctaac
atgtaagatcctgtggccccagtctctcctccccattgagtccaggacat
agtgatggatatagatatcagtaaatataacttagatattggaggatgag
ttagtcacatggaggtttgggagtagcccatcataagctgtttagtgata
taaagtggaagactctctctctcctctgtcctctctccatctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53062997_53064147
seq2: B6Ng01-176F09.b_48_1207 (reverse)

seq1  GCAAATCATCC---TCCAGTAATTTTTCCTCATTTTATTT-AGC-AGTGA  45
      |||||||||||    ||||  ||||||||||||||||||| ||| | |||
seq2  GCAAATCATCCCCTCCCAGGTATTTTTCCTCATTTTATTTAAGCAATTGA  50

seq1  AA--CATCTACACA-TTTGGTCTGCCGAGGTAAAGATTTTCAA-GGACTG  91
      ||  ||||||||||  |||||||||||| |||||||||||||| ||||||
seq2  AAACCATCTACACACATTGGTCTGCCGA-GTAAAGATTTTCAAGGGACTG  99

seq1  TTCCTGGTTTAAAC-ATATATTCATGGAGATTTTCTTTGATTTTTTTTTT  140
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTTAAACAAAATATTCATGGAGATTTTCTTTGATTTTTTTTTT  149

seq1  TTTTTTAGTTAGATCCATCTATACTCTGTAAATGTGAGAGGAAATACAGA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTTAGATCCATCTATACTCTGTAAATGTGAGAGGAAATACAGA  199

seq1  AATAACAATAATTTTGCAGTATTGGGTAGTAAACTGTCAGCAATGTGTCT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATAATTTTGCAGTATTGGGTAGTAAACTGTCAGCAATGTGTCT  249

seq1  TCTTACATTTTGATTCAGTATGATATCAAAGGAAAAAAATCAAGCTATAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTTTGATTCAGTATGATATCAAAGGAAAAAAATCAAGCTATAG  299

seq1  CTGGATACAAATTTGGATATCTCATTAAATTCCTGACATGCTTTAGTAGC  340
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGGATACAAATTTGGATATCTCATTAAATTCGTGACATGCTTTAGTAGC  349

seq1  TTCCAAGTTAAAAGATATTGACTATAATTGGGGACTTTTAAATGCATTCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTTAAAAGATATTGACTATAATTGGGGACTTTTAAATGCATTCT  399

seq1  GGCTAAATTCCAGGCAATTATTTTACCTTAAAGTTTTGTCACATTATATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATTCCAGGCAATTATTTTACCTTAAAGTTTTGTCACATTATATG  449

seq1  ATTTTATTGCACATTTATATAAAATGATGACTTTTTAACTCAATTCATAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGCACATTTATATAAAATGATGACTTTTTAACTCAATTCATAT  499

seq1  GATTTCCCAATGTCTCATTTAAAATCATTTAAACATCTGTCTTTAGTCAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCAATGTCTCATTTAAAATCATTTAAACATCTGTCTTTAGTCAC  549

seq1  ATTGTATGAATGCTGATTCTACACTCTCTGTTACAGATGGCTAAAAAATA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGAATGCTGATTCTACACTCTCTGTTACAGATGGCTAAAAAATA  599

seq1  TACAGTCCACATGGGCCATTTCAGCTTTCTGGTCACTGTTCTATCATATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCCACATGGGCCATTTCAGCTTTCTGGTCACTGTTCTATCATATT  649

seq1  CAATCCCTGGGGCTCCTGTGCCTCCTTTATTTTGTCTTTGGCAGCCCTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTGGGGCTCCTGTGCCTCCTTTATTTTGTCTTTGGCAGCCCTGT  699

seq1  GTAAATTGGAGTGTTCCTATTCTCATCTGCTCATTCCTTTACTGTCATAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGGAGTGTTCCTATTCTCATCTGCTCATTCCTTTACTGTCATAA  749

seq1  CAATCCCATTTTTGTATTGAAAATTGGTCTTCTCTGAGGCTTAAATATTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCATTTTTGTATTGAAAATTGGTCTTCTCTGAGGCTTAAATATTG  799

seq1  TTTTATGTTCTTTATGGTTGTGATATTCTAAATGAAAACTAAGATTTATG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTCTTTATGGTTGTGATATTCTAAATGAAAACTAAGATTTATG  849

seq1  ATGCCCTGGAGAGACCACTTGTTTTCAGTCCTTCAAAGAAAAATGTTACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGGAGAGACCACTTGTTTTCAGTCCTTCAAAGAAAAATGTTACA  899

seq1  TTAAACAGAGTGTTGGTAACCCCACAGTGCATCCAAACACTTCATAAAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGAGTGTTGGTAACCCCACAGTGCATCCAAACACTTCATAAAAT  949

seq1  ATTAACTATGCTTGAGCGAAAGTGAACATCACACTTATTTATGGAGATGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTATGCTTGAGCGAAAGTGAACATCACACTTATTTATGGAGATGA  999

seq1  AAATTATTGTATGTGTTAATGTAACACTATGAATATTCACAATACTTCTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTGTATGTGTTAATGTAACACTATGAATATTCACAATACTTCTT  1049

seq1  TCCTTACTTTTGCTAAGAATATATCTAAAAATATCTGCCTCCCTCATATC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTTTTGCTAAGAATATATCTAAAAATATCTGCCTCCCTCATATC  1099

seq1  AGTTTAAAGTGTTCTTTATGTATGACTACACAGAGAGTGCTAAATAACCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGTGTTCTTTATGTATGACTACACAGAGAGTGCTAAATAACCT  1149

seq1  CAAGGGAATTC  1151
      |||||||||||
seq2  CAAGGGAATTC  1160

seq1: chr8_52932616_52933675
seq2: B6Ng01-176F09.g_63_1107

seq1  GAATTCACTCGGACAACCGGATCCTTCTACAGCAAAGCTTTATTGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGGACAACCGGATCCTTCTACAGCAAAGCTTTATTGCTTCA  50

seq1  TCATAAGGAAGACCCCGAACCCGGAAAATGGAGCTGCTTAAATTCCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGAAGACCCCGAACCCGGAAAATGGAGCTGCTTAAATTCCCCTC  100

seq1  CTTGTGACTTGTCAGCTCCTGATTAGCTGCTCACTCATCACCCCACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACTTGTCAGCTCCTGATTAGCTGCTCACTCATCACCCCACTACT  150

seq1  ACACCCCGAGATGGGCAGAGACTTGGCACGAATTTACTCCAGCACCTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCGAGATGGGCAGAGACTTGGCACGAATTTACTCCAGCACCTGCG  200

seq1  CACATTGCTCGTTTACTAATTAGGCACTGCGGAAGCCAGCACCATCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGCTCGTTTACTAATTAGGCACTGCGGAAGCCAGCACCATCTTGT  250

seq1  AATGGCGATTGGTCACGGCTTTCCACAATCACATAAAATCATGGCGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGATTGGTCACGGCTTTCCACAATCACATAAAATCATGGCGATTT  300

seq1  GACAGTACATTACTAAATATTAAACTGATTAAAGAAAAATCAAAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTACATTACTAAATATTAAACTGATTAAAGAAAAATCAAAAAAGAA  350

seq1  ATGAAATCATTCAAATGAAAACAAACAAAGCAAAAGAACCCAAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCATTCAAATGAAAACAAACAAAGCAAAAGAACCCAAAAACAAA  400

seq1  AACAAAAACAAAAACAAAAACCTCTAGGCACATTAAAATAGATTCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAACAAAAACCTCTAGGCACATTAAAATAGATTCCTGAG  450

seq1  AGGAAACTTTATAGCTCTCAGCACCTATATGATTTCAGTTAAACAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTTTATAGCTCTCAGCACCTATATGATTTCAGTTAAACAAAATA  500

seq1  ATAATTTTTCTAAGATATTTCATACATCCATAACATAATTTTTTTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTCTAAGATATTTCATACATCCATAACATAATTTTTTTGTCTT  550

seq1  CTTCTACACTGTCTATATTAATCGTTGTTCTAGATTTGATCTAATCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACACTGTCTATATTAATCGTTGTTCTAGATTTGATCTAATCTTAT  600

seq1  TTGTGTTATTTTGGTCTCCAAATTATTCTGGAATGCACATGTCTGCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTATTTTGGTCTCCAAATTATTCTGGAATGCACATGTCTGCATGT  650

seq1  AAGAGGCTGAGGGACCCAGCCCCAATTGATATTGATTGATAAATAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTGAGGGACCCAGCCCCAATTGATATTGATTGATAAATAATGTT  700

seq1  GCCTGAGATCCATGATTGGACAGGGAGATAGGAGTGGAACTTTTAGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGATCCATGATTGGACAGGGAGATAGGAGTGGAACTTTTAGGATT  750

seq1  CCAAAGTAAGGGTCCAGGAGAGAGAGGGAAAGAAAGTGCCACCGTGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAAGGGTCCAGGAGAGAGAGGGAAAGAAAGTGCCACCGTGCTGG  800

seq1  AAAAGAAGTAGCTGCCATGACTGAAAATGAAGGGCAGAGAAATGGCTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTAGCTGCCATGACTGAAAATGAAGGGCAGAGAAATGGCTAAC  850

seq1  ATGTAAGATCCTGTGGCCCCAGTCTCTCCTCCCCATTGAGTCCAGGACAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGTAAGATCCTGTGGCCCCAGTCTCTCCTCCCCATTGAGTCCAGGAC-A  899

seq1  TAGTGATGGAATATAGATATCAGTAAATAATAACTTAAGAATATTGGAGG  950
      ||||||||| |||||||||||||||||| ||||||||   ||||||||||
seq2  TAGTGATGG-ATATAGATATCAGTAAAT-ATAACTTA--GATATTGGAGG  945

seq1  AATGAAGTTAGTCACATGGAGGTTTGGGAGTAGCCCAATCATTAAGCTGT  1000
       ||| ||||||||||||||||||||||||||||||| |||| ||||||||
seq2  -ATG-AGTTAGTCACATGGAGGTTTGGGAGTAGCCC-ATCA-TAAGCTGT  991

seq1  TTAAGTGATATTAAAGTGGAAGCCCCCCTCTCTCTCTCTCTCTGT-CTCT  1049
      || ||||||| |||||||||||     ||||||||||| |||||| ||||
seq2  TT-AGTGATA-TAAAGTGGAAG----ACTCTCTCTCTC-CTCTGTCCTCT  1034

seq1  CTCTGTCTCTC  1060
      |||  ||||||
seq2  CTCCATCTCTC  1045