BAC Information

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BAC

Clone NameB6Ng01-176O22
Chromosome8 (Build37)
Map Location 108,151,987 - 108,275,573
singlet/doubletdoublet
Overlap gene2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Upstream geneRrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846
Downstream geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176O22.bB6Ng01-176O22.g
ACCGA004337GA004338
length1,030776
definitionB6Ng01-176O22.b B6Ng01-176O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,151,987 - 108,153,019)(108,274,804 - 108,275,573)
sequence
gaattcagtttctaaacacaataacagaaatgtctttggacatatattcc
ttttttttaaaaagatttatttattaatatatgtaagtacactgtagctg
tcttcagacactccagaagaggatcttgttgtggatggttgtgagccacc
atgtggttgctgggatttgaactctggaccttcggaagagcagttgggtg
gtgctcttacccactgagccatctcaccagccctggacatatattcctac
aagctctgggcttcgtatattcaatttcccaatttatgtttacacttatc
tagaatgcaacatctaacattttgaggatgaaagtaccacaggtttagtg
gagaaaagcctgaaaattcagcacatcacctgtctccttcagcattatct
gtctagggcatgaagttggcacatcatagcctcaaatatctctgctgtct
gccaaggttgcatgatattttcatcattaaagccctttctatatggctca
gaggttaaaagtacttctgctcatgtctgatgagtcttgacgacagcttt
tccttttaggtgaagcagtagttactgttcagctagctttcaggtcagaa
atctttttgtcccttctaaacaaatcacatggaattaggagtgtgggggt
tcagtgcttaccaggcacaaggtactgggcttagttcttggcagaggtat
ctcctcccttctctttactaggcagctttggaggcaaagcatcctctcta
gagggctgctacagaagcagaaatgctgagcacctagccacagtgcacaa
ctgtaaccctagcactcagcaggctggaggagaaggataatttgagccta
ggacttcaaaatcaggtgggatgtggagacaaagaaagaaaggaggggct
gggcatggtgggtgcatgccttaatcccagcacttgggaaggcagatgca
aggtggattcctgagttcagaccagcctggtctacaaagtgattccagta
cagcaggctatacgaagaatcagagaaacc
gaattcaggcaaaggagacaagagagggaggaagactgagagtgagcatg
gctggataggaaggagggctctgagagaatgagaagctggggagggaagc
ccaggagctgacggttagggctgggggtggatgagaagagtggagaaggc
ctggaggccaggatgcccttcggtgtgccaatgggcaccacagatagcct
ttagaatctgacacttctctcctaccttgttggttctagggaattcagct
cagatctgtacgacttggggtgagtgtctttacccactgagccacactgc
cggccctagtgagcagatttctgtacaggagggcatcacaagggggcatg
gtggctcatgcctgtaatttcagcaattgggaggctgaggctggaggatc
tttgaggcgggagttcaaggccagccatggctatatattgaggtttttgt
tttgttttgttttgtctcaaaatcaaaagcaaacaaggagaaagccttaa
ggctaaatcaatagttgtctttggaaaccctcataagtaaagactccccg
ttcttgaccccagaagtaaagccaatctgtgtgacatactgagtctaggg
ttgctgagacaagtgggttgttggaaggttgttctccgtgccttaaggac
aaaccaggttttgttaccacatggcctgccacagcccggtttctcatgtc
ccataccagtctctgttcagctaggtacaagcaagaaaatggacactgat
ctctttgggacatgggcctgctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108151987_108153019
seq2: B6Ng01-176O22.b_48_1077

seq1  GAATTCAGTTTCTAAACACAATAACAGAAATGTCTTTGGACATATATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTAAACACAATAACAGAAATGTCTTTGGACATATATTCC  50

seq1  TTTTTTTTAAAAAGATTTATTTATTAATATATGTAAGTACACTGTAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAAAGATTTATTTATTAATATATGTAAGTACACTGTAGCTG  100

seq1  TCTTCAGACACTCCAGAAGAGGATCTTGTTGTGGATGGTTGTGAGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACTCCAGAAGAGGATCTTGTTGTGGATGGTTGTGAGCCACC  150

seq1  ATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTG  200

seq1  GTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGGACATATATTCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGGACATATATTCCTAC  250

seq1  AAGCTCTGGGCTTCGTATATTCAATTTCCCAATTTATGTTTACACTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGGGCTTCGTATATTCAATTTCCCAATTTATGTTTACACTTATC  300

seq1  TAGAATGCAACATCTAACATTTTGAGGATGAAAGTACCACAGGTTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCAACATCTAACATTTTGAGGATGAAAGTACCACAGGTTTAGTG  350

seq1  GAGAAAAGCCTGAAAATTCAGCACATCACCTGTCTCCTTCAGCATTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCCTGAAAATTCAGCACATCACCTGTCTCCTTCAGCATTATCT  400

seq1  GTCTAGGGCATGAAGTTGGCACATCATAGCCTCAAATATCTCTGCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGGCATGAAGTTGGCACATCATAGCCTCAAATATCTCTGCTGTCT  450

seq1  GCCAAGGTTGCATGATATTTTCATCATTAAAGCCCTTTCTATATGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTTGCATGATATTTTCATCATTAAAGCCCTTTCTATATGGCTCA  500

seq1  GAGGTTAAAAGTACTTCTGCTCATGTCTGATGAGTCTTGACGACAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAAAAGTACTTCTGCTCATGTCTGATGAGTCTTGACGACAGCTTT  550

seq1  TCCTTTTAGGTGAAGCAGTAGTTACTGTTCAGCTAGCTTTCAGGTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAGGTGAAGCAGTAGTTACTGTTCAGCTAGCTTTCAGGTCAGAA  600

seq1  ATCTTTTTGTCCCTTCTAAACAAATCACATGGAATTAGGAGTGTGGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTCCCTTCTAAACAAATCACATGGAATTAGGAGTGTGGGGGT  650

seq1  TCAGTGCTTACCAGGCACAAGGTACTGGGCTTAGTTCTTGGCAGAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTACCAGGCACAAGGTACTGGGCTTAGTTCTTGGCAGAGGTAT  700

seq1  CTCCTCCCTTCTCTTTACTAGGCAGCTTTGGAGGCAAAGCATCCTCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTTCTCTTTACTAGGCAGCTTTGGAGGCAAAGCATCCTCTCTA  750

seq1  GAGGGCTGCTACAGAAGCAGAAATGCTGAGCACCTAGCCACAGTGCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGCTACAGAAGCAGAAATGCTGAGCACCTAGCCACAGTGCACAA  800

seq1  CTGTAACCCTAGCACTCAGCAGGCTGGAGGAGAAGGATAATTTGAGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCCTAGCACTCAGCAGGCTGGAGGAGAAGGATAATTTGAGCCTA  850

seq1  GGACTTCAAAATCAGGTGGGATGTGGAGACAAAGAAAGAAAGGAGGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAAAATCAGGTGGGATGTGGAGACAAAGAAAGAAAGGAGGGGCT  900

seq1  GGGCATGGT-GGTGCATGCCTTTAATCCCAGCACTTGGG-AGGCAGAGGC  948
      ||||||||| |||||||||| |||||||||||||||||| ||||||| ||
seq2  GGGCATGGTGGGTGCATGCC-TTAATCCCAGCACTTGGGAAGGCAGATGC  949

seq1  -AGGTGGATTTCTGAGTTCAAGACCAGCCTGGTCTACAAAGTGATTTCCA  997
       ||||||||| |||||||| |||||||||||||||||||||||| |||||
seq2  AAGGTGGATTCCTGAGTTC-AGACCAGCCTGGTCTACAAAGTGA-TTCCA  997

seq1  GGACAGCCAGGGCTATACAGAGAATACAGAGAAACC  1033
      | |||||   ||||||||  ||||| ||||||||||
seq2  GTACAGC--AGGCTATACGAAGAAT-CAGAGAAACC  1030

seq1: chr8_108274804_108275573
seq2: B6Ng01-176O22.g_67_842 (reverse)

seq1  TCAG-GCAGG-CCATGTCCC-AAGAGCTCAGTGTCCA-TTTCTTGCTTGT  46
      |||| ||||| ||||||||| ||||| |||||||||| ||||||||||||
seq2  TCAGAGCAGGCCCATGTCCCAAAGAGATCAGTGTCCATTTTCTTGCTTGT  50

seq1  CCCTAGCTGAACAGAGACTGGTATGGGACCTGAG-AACCGGGCTGTGGCA  95
       |||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  ACCTAGCTGAACAGAGACTGGTATGGGACATGAGAAACCGGGCTGTGGCA  100

seq1  GGCCATGTGGTAAC-AAACCTGGTTTGTCCTTAAGGCACGGAGAACAACC  144
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCCATGTGGTAACAAAACCTGGTTTGTCCTTAAGGCACGGAGAACAACC  150

seq1  TTCCAACAACCCACTTGTCTCAGCAACCCTAGACTCAGTATGTCACACAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACAACCCACTTGTCTCAGCAACCCTAGACTCAGTATGTCACACAG  200

seq1  ATTGGCTTTACTTCTGGGGTCAAGAACGGGGAGTCTTTACTTATGAGGGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTTACTTCTGGGGTCAAGAACGGGGAGTCTTTACTTATGAGGGT  250

seq1  TTCCAAAGACAACTATTGATTTAGCCTTAAGGCTTTCTCCTTGTTTGCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGACAACTATTGATTTAGCCTTAAGGCTTTCTCCTTGTTTGCTT  300

seq1  TTGATTTTGAGACAAAACAAAACAAAACAAAAACCTCAATATATAGCCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTGAGACAAAACAAAACAAAACAAAAACCTCAATATATAGCCAT  350

seq1  GGCTGGCCTTGAACTCCCGCCTCAAAGATCCTCCAGCCTCAGCCTCCCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTGAACTCCCGCCTCAAAGATCCTCCAGCCTCAGCCTCCCAA  400

seq1  TTGCTGAAATTACAGGCATGAGCCACCATGCCCCCTTGTGATGCCCTCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAATTACAGGCATGAGCCACCATGCCCCCTTGTGATGCCCTCCT  450

seq1  GTACAGAAATCTGCTCACTAGGGCCGGCAGTGTGGCTCAGTGGGTAAAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAATCTGCTCACTAGGGCCGGCAGTGTGGCTCAGTGGGTAAAGA  500

seq1  CACTCACCCCAAGTCGTACAGATCTGAGCTGAATTCCCTAGAACCAACAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCCCAAGTCGTACAGATCTGAGCTGAATTCCCTAGAACCAACAA  550

seq1  GGTAGGAGAGAAGTGTCAGATTCTAAAGGCTATCTGTGGTGCCCATTGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGAGAAGTGTCAGATTCTAAAGGCTATCTGTGGTGCCCATTGGC  600

seq1  ACACCGAAGGGCATCCTGGCCTCCAGGCCTTCTCCACTCTTCTCATCCAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGAAGGGCATCCTGGCCTCCAGGCCTTCTCCACTCTTCTCATCCAC  650

seq1  CCCCAGCCCTAACCGTCAGCTCCTGGGCTTCCCTCCCCAGCTTCTCATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTAACCGTCAGCTCCTGGGCTTCCCTCCCCAGCTTCTCATTC  700

seq1  TCTCAGAGCCCTCCTTCCTATCCAGCCATGCTCACTCTCAGTCTTCCTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCCCTCCTTCCTATCCAGCCATGCTCACTCTCAGTCTTCCTCC  750

seq1  CTCTCTTGTCTCCTTTGCCTGAATTC  770
      ||||||||||||||||||||||||||
seq2  CTCTCTTGTCTCCTTTGCCTGAATTC  776